Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008535

Physical Location & Seq

Genomic Coordinates Forward (+)

20212757 .. 20214662

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGACGACGTCGGTTGATTCTCCAAACACTGAGATGGATCCCAACACTGAGCTTGATACTAATCCTAACCCTAATTCTTCAAACTCCTTAGTCCCTGCCTCCCCCAGTGGCCCTGCTGTCTGCCTTCTCAGGTTCGCCGGAGACTCCGCTGGTGGCGCGTTCATGGGCTCCATTTTTGGATACGGTGCGGGGTTGTTCAAGAAAAAAGGTTTTAAAGGATCATTTGCAGATGCAGGATCTTCTGCAAAGACATTCGCAGTTTTGTCCGGAGTGCACAGTTTGGTTGTCTGCATGTTGAAGAGGCTGCGAGGAAAGGATGATGTCATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTTAGTTTTCCAGGTGCACCCCAGGCTCTTCTACAAAGCTGTCTCACTTTTGGGGCATTCTCATTTGTTATTGAAGGCCTAAACAAGCAGCAGCCGGCTTTAGCACAACCATTTTCTGTGAGGAAGAAAAGTGAGCAAGTTCGTCCCTTGGTGCTCCCCCTTCAATTTTCACTCCCGGGAGAACTAAAAGCGGGTTTCACCTTCTTTTGCAATTCCTTGAAGAATCGCGAGAAGGGCACTTCTCACCCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

207

Amino Acids

21.42

Weight (kDa)

9.11

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	49 - 143	5e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26670 AT5G55510
fragaria_vesca	FvH4_3g23900 FvH4_3g23900
malus_domestica	MD00G1122600.v1.1 MD03G1189900.v1.1 MD05G1006500.v1.1 MD06G1020100.v1.1 MD11G1206200.v1.1
prunus_persica	Prupe.4G231300_v2.0.a1
pyrus_communis	pycom03g14280 pycom11g17900
rosa_chinensis	RchiOBHm_Chr5g0042411
rosa_laevigata	RLG00000034121
rosa_multiflora	Rmu_co8490549.1_g000001 Rmu_sc0002779.1_g000012 Rmu_sc0003219.1_g000024
rosa_roxburghii	Rroxscaffold_1G00038300
rosa_rugosa	Rorug05G0199600
rosa_samantha	Rh5AG286000 Rh5BG290700 Rh5CG322700
rosa_wichuraiana	Rw5G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AccII	CGCG	2 cut(s)	161, 594
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	3 cut(s)	150, 191, 557
AclWI	GGATC	4 cut(s)	35, 48, 229, 247
AcyI	GRCGYC	1 cut(s)	11
AgsI	TTSAA	6 cut(s)	84, 202, 301, 440, 530, 586
AjnI	CCWGG	2 cut(s)	376, 387
AluBI	AGCT	3 cut(s)	55, 344, 405
AluI	AGCT	3 cut(s)	55, 344, 405
Alw21I	GWGCWC	3 cut(s)	279, 385, 522
Alw26I	GTCTC	2 cut(s)	138, 413
Alw44I	GTGCAC	2 cut(s)	275, 381
AlwI	GGATC	4 cut(s)	35, 48, 229, 247
Ama87I	CYCGRG	1 cut(s)	541
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	2 cut(s)	112, 442
ApaLI	GTGCAC	2 cut(s)	275, 381
ApeKI	GCWGC	3 cut(s)	307, 454, 457
AseI	ATTAAT	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	2 cut(s)	542, 543
AsuHPI	GGTGA	2 cut(s)	556, 602
AvaI	CYCGRG	1 cut(s)	541
BaeGI	GKGCMC	3 cut(s)	279, 385, 605
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	279, 385, 522
BbvI	GCAGC	3 cut(s)	294, 466, 469
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	378, 389
BciVI	GTATCC	1 cut(s)	176
BcnI	CCSGG	2 cut(s)	542, 543
BcoDI	GTCTC	2 cut(s)	138, 413
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	308, 455, 458
BlsI	GCNGC	3 cut(s)	309, 456, 459
Bme1390I	CCNGG	4 cut(s)	378, 389, 542, 543
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	42, 172
BmrFI	CCNGG	4 cut(s)	378, 389, 542, 543
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	357
BpuMI	CCSGG	2 cut(s)	542, 543
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	387, 513, 541
BsaWI	WCCGGW	1 cut(s)	269
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	2 cut(s)	108, 361
Bse8I	GATNNNNATC	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	378, 389
BseDI	CCNNGG	3 cut(s)	387, 513, 541
BseGI	GGATG	2 cut(s)	325, 353
BseJI	GATNNNNATC	1 cut(s)	63
BseMII	CTCAG	3 cut(s)	24, 42, 145
BseNI	ACTGG	2 cut(s)	108, 361
BseSI	GKGCMC	3 cut(s)	279, 385, 605
BseXI	GCAGC	3 cut(s)	294, 466, 469
BseYI	CCCAGC	1 cut(s)	613
Bsh1236I	CGCG	2 cut(s)	161, 594
BshFI	GGCC	2 cut(s)	114, 444
BsiHKAI	GWGCWC	3 cut(s)	279, 385, 522
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	4 cut(s)	141, 270, 461, 542
BslFI	GGGAC	2 cut(s)	80, 495
BsmAI	GTCTC	2 cut(s)	138, 413
BsmFI	GGGAC	2 cut(s)	80, 495
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	114, 444
BsoBI	CYCGRG	1 cut(s)	541
Bsp1286I	GDGCHC	5 cut(s)	173, 279, 385, 522, 605
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	40, 221, 239
Bsp68I	TCGCGA	1 cut(s)	594
BspACI	CCGC	3 cut(s)	150, 191, 557
BspANI	GGCC	2 cut(s)	114, 444
BspCNI	CTCAG	3 cut(s)	25, 43, 144
BspEI	TCCGGA	1 cut(s)	269
BspFNI	CGCG	2 cut(s)	161, 594
BspLI	GGNNCC	2 cut(s)	42, 172
BspPI	GGATC	4 cut(s)	35, 48, 229, 247
BspQI	GCTCTTC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	108, 361
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	387, 513, 541
BssMI	GATC	3 cut(s)	40, 221, 239
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	378, 389
Bst4CI	ACNGT	2 cut(s)	188, 281
Bst6I	CTCTTC	2 cut(s)	296, 399
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	5 cut(s)	33, 51, 91, 131, 368
BstF5I	GGATG	2 cut(s)	325, 353
BstFNI	CGCG	2 cut(s)	161, 594
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	43, 224, 242
BstMAI	GTCTC	2 cut(s)	138, 413
BstMBI	GATC	3 cut(s)	40, 221, 239
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 341, 389, 600
BstNI	CCWGG	2 cut(s)	378, 389
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	4 cut(s)	376, 387, 540, 541
BstSLI	GKGCMC	3 cut(s)	279, 385, 605
BstUI	CGCG	2 cut(s)	161, 594
BstV1I	GCAGC	3 cut(s)	294, 466, 469
BstX2I	RGATCY	2 cut(s)	40, 239
BstYI	RGATCY	2 cut(s)	40, 239
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	114, 444
BtsCI	GGATG	2 cut(s)	325, 353
BtsIMutI	CAGTG	4 cut(s)	30, 48, 115, 354
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	113
Cfr9I	CCCGGG	1 cut(s)	541
CviAII	CATG	2 cut(s)	166, 295
DdeI	CTNAG	5 cut(s)	33, 51, 91, 131, 368
DpnI	GATC	3 cut(s)	42, 223, 241
DpnII	GATC	3 cut(s)	40, 221, 239
DraI	TTTAAA	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	296, 399
EarI	CTCTTC	2 cut(s)	296, 399
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	376, 387
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	2 cut(s)	169, 298
FaiI	YATR	2 cut(s)	167, 296
FaqI	GGGAC	2 cut(s)	80, 495
FatI	CATG	2 cut(s)	165, 294
FauI	CCCGC	2 cut(s)	184, 550
Fnu4HI	GCNGC	3 cut(s)	308, 455, 458
FokI	GGATG	2 cut(s)	332, 360
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	308, 455, 458
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	308, 455, 458
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	114, 444
HapII	CCGG	4 cut(s)	141, 270, 461, 542
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	169, 298
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	3 cut(s)	20, 146, 589
HpaII	CCGG	4 cut(s)	141, 270, 461, 542
HphI	GGTGA	2 cut(s)	556, 602
Hpy166II	GTNNAC	2 cut(s)	277, 383
Hpy188III	TCNNGA	3 cut(s)	202, 270, 593
Hpy8I	GTNNAC	2 cut(s)	277, 383
Hpy99I	CGWCG	3 cut(s)	10, 13, 16
HpyAV	CCTTC	5 cut(s)	137, 434, 536, 577, 592
HpyCH4III	ACNGT	2 cut(s)	188, 281
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	8 cut(s)	230, 236, 248, 277, 294, 354, 383, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 341, 389, 600
HpyF3I	CTNAG	5 cut(s)	33, 51, 91, 131, 368
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	169, 298
HspAI	GCGC	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	40, 221, 239
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	176, 525
Lsp1109I	GCAGC	3 cut(s)	294, 466, 469
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	11
MalI	GATC	3 cut(s)	42, 223, 241
MboI	GATC	3 cut(s)	40, 221, 239
MboII	GAAGA	6 cut(s)	72, 234, 313, 386, 502, 598
MflI	RGATCY	2 cut(s)	40, 239
MhlI	GDGCHC	5 cut(s)	173, 279, 385, 522, 605
MluCI	AATT	3 cut(s)	76, 530, 577
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	4 cut(s)	112, 297, 305, 480
MroI	TCCGGA	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	460
MseI	TTAA	2 cut(s)	216, 330
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	4 cut(s)	141, 270, 461, 542
MspR9I	CCNGG	4 cut(s)	378, 389, 542, 543
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	2 cut(s)	378, 389
MvnI	CGCG	2 cut(s)	161, 594
MwoI	GCNNNNNNNGC	4 cut(s)	158, 341, 389, 600
NaeI	GCCGGC	1 cut(s)	462
NciI	CCSGG	2 cut(s)	542, 543
NdeII	GATC	3 cut(s)	40, 221, 239
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	2 cut(s)	169, 298
NlaIV	GGNNCC	2 cut(s)	42, 172
NruI	TCGCGA	1 cut(s)	594
NspI	RCATGY	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	422
PdiI	GCCGGC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	20, 589
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	309, 456, 459
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	376, 387
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	2 cut(s)	376, 387
PspN4I	GGNNCC	2 cut(s)	42, 172
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	40, 239
PsyI	GACNNNGTC	1 cut(s)	10
RruI	TCGCGA	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	216, 330
SatI	GCNGC	3 cut(s)	308, 455, 458
Sau3AI	GATC	3 cut(s)	40, 221, 239
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	4 cut(s)	378, 389, 542, 543
SduI	GDGCHC	5 cut(s)	173, 279, 385, 522, 605
SetI	ASST	8 cut(s)	14, 57, 137, 214, 346, 382, 407, 569
SfaNI	GCATC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	76, 530, 577
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	3 cut(s)	150, 191, 557
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	4 cut(s)	376, 387, 540, 541
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	188, 281
TaiI	ACGT	1 cut(s)	14
TasI	AATT	3 cut(s)	76, 530, 577
TfiI	GAWTC	2 cut(s)	20, 589
Tru1I	TTAA	2 cut(s)	216, 330
Tru9I	TTAA	2 cut(s)	216, 330
TscAI	CASTG	4 cut(s)	37, 55, 115, 361
TseI	GCWGC	3 cut(s)	307, 454, 457
TspDTI	ATGAA	1 cut(s)	154
TspMI	CCCGGG	1 cut(s)	541
TspRI	CASTG	4 cut(s)	37, 55, 115, 361
Tth111I	GACNNNGTC	1 cut(s)	10
VneI	GTGCAC	2 cut(s)	275, 381
VspI	ATTAAT	1 cut(s)	330
XceI	RCATGY	1 cut(s)	298
XmaI	CCCGGG	1 cut(s)	541
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.