pycom11g18780

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015575
Physical Location & Seq
Reverse (-)
20949320 .. 20951616
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18780.3

Sequence Viewer

Length: 1245 bp
ATGGCCACTACCAAATCTGTAATTCTTATCATATTAACAGTTTCCTCCTCACTTCTTTTCCCAATTTCTGAGCAATTTTCCAATTGTAGCCCCATCAATCCCATGAACATTACAAACTGCAAGAAACTAATCACTCTAGGAGCAGAATTCGGGTGGAACATTCACAGTAACACCGAAATTGACATCTTGCTCACCATTAGAATGCCTATTAAATGGATAGCCTGGGGTGTAAACCCAGGTCCCCAAAGACCGCAGATGGTCGGGACCAGGGCTATTATAGGCATTCAACAGCCCAATGCAACGTTGGCAGTTAGAAAATACAACATCACCAGTGACACCAAGCTGGGCTGTAGGCTTCAGCCTTCACAAGATTTTGATGATGTTGTCGTCAAGAACATGAGAGGTGAAGTAAACCCTGGGTACATGTCGATATCCGCAACGTTAATTTTGCCCCGGGCTCCTGCTGTCTACGATATTTCGAAGCTGAATCATGTTTGGCAAGTAGGGTTTGAGGCTGATGATGTTCTTATGGAGCCTAAGATGCATTCCACTTTTCTCCAGAATGTGGATAGCACAGAGAGCATAAACATGACCAGCGGACACGGTCTTAGCGTAGGACATCGCCGGCATCACCTCAGAACGGTACATGGCATTCTTAATATTGTGGGGTGGGGAACAATGTTGCCATTGGGAGTGATCATAGCAAGGTACTTCAGAAAATGCCCTATTCCCTGTGAAAAGTGGTATATGGTTCATGTCTCCTGCCAGATTGTTGGTTACATTCTTGGCACGGCTGGTTGGGCGATCGGACTCTGGCTCGGCCATGCTTCCAGACACTACAGCTTCTCCACTCATCGAATTCTCGCCATTTGCATATTTGCCTTCACCACATTACAAATGCTTGCCCTGCGTTTAAGGCCATCGGCAACTGATGACTACCGGAAATATTGGGACATGTACCATCATTTTCTAGGGTATGCACTGCTGGCTGTGATCTCAGTGAACATATTCCATGGCATTGCGATTTTGAAGCCGAATAAAACCTGGCTGTGGGTTTACATCGGAGTCCTTGGAATGTTTGCTTTGGTTGCGATTGGTTTGGAGATTTTTACTTGGAGTAAGTTCCTGCATGCAAAGTCTAAAGGGGAACAACAATATGCAGGGCAAACAGGTCAATCTGGTTCAGGACCTCAAGGCTCCTCGGGCACAGAACCAGGTACAGACCCATTACCGGGATCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

415

Amino Acids

46.0

Weight (kDa)

9.25

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23200
malus_domestica MD03G1196700.v1.1 MD11G1212800.v1.1
prunus_persica Prupe.4G218700_v2.0.a1
pyrus_communis pycom11g18780
rosa_laevigata RLG00000034009
rosa_multiflora Rmu_sc0004953.1_g000005 Rmu_sc0004953.1_g000008
rosa_roxburghii Rroxscaffold_1G00039840
rosa_rugosa Rorug05G0188200 Rorug05G0220100
rosa_samantha Rh5AG273700 Rh5BG278800 Rh5CG310800 Rh5DG287000
rosa_wichuraiana Rw5G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 468
AciI CCGC 3 cut(s) 251, 435, 597
AclI AACGTT 2 cut(s) 302, 440
AclWI GGATC 2 cut(s) 1230, 1243
AcoI YGGCCR 2 cut(s) 3, 820
AcsI RAATTY 2 cut(s) 146, 858
AcuI CTGAAG 2 cut(s) 341, 697
AfaI GTAC 5 cut(s) 422, 645, 710, 959, 1219
AfiI CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
AflIII ACRYGT 2 cut(s) 423, 954
AgsI TTSAA 2 cut(s) 287, 1030
AjnI CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
AluBI AGCT 3 cut(s) 343, 484, 843
AluI AGCT 3 cut(s) 343, 484, 843
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 2 cut(s) 1230, 1243
Ama87I CYCGRG 2 cut(s) 453, 1201
AoxI GGCC 3 cut(s) 3, 820, 917
ApoI RAATTY 2 cut(s) 146, 858
Asp700I GAANNNNTTC 1 cut(s) 1007
AspS9I GGNCC 3 cut(s) 239, 264, 1187
AsuC2I CCSGG 3 cut(s) 454, 455, 1233
AsuHPI GGTGA 5 cut(s) 184, 319, 416, 623, 877
AsuII TTCGAA 1 cut(s) 479
AvaI CYCGRG 2 cut(s) 453, 1201
AvaII GGWCC 3 cut(s) 239, 264, 1187
BaeGI GKGCMC 1 cut(s) 1208
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1235
BanII GRGCYC 1 cut(s) 460
BccI CCATC 4 cut(s) 101, 250, 928, 969
BceAI ACGGC 1 cut(s) 807
BciT130I CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
BclI TGATCA 1 cut(s) 696
BcnI CCSGG 3 cut(s) 454, 455, 1233
BcoDI GTCTC 1 cut(s) 763
BfaI CTAG 2 cut(s) 137, 971
BfmI CTRYAG 2 cut(s) 349, 838
Bme1390I CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
Bme18I GGWCC 3 cut(s) 239, 264, 1187
BmeT110I CYCGRG 2 cut(s) 453, 1201
BmgT120I GGNCC 3 cut(s) 239, 264, 1187
BmiI GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
BmrFI CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
BmsI GCATC 2 cut(s) 531, 637
BpmI CTGGAG 1 cut(s) 542
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 1176
BpuMI CCSGG 3 cut(s) 454, 455, 1233
BsaWI WCCGGW 1 cut(s) 939
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
Bse118I RCCGGY 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 1017
BseBI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
BseLI CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
BseMI GCAATG 1 cut(s) 1017
BseMII CTCAG 3 cut(s) 60, 649, 1011
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 2 cut(s) 37, 1189
BseSI GKGCMC 1 cut(s) 1208
BseYI CCCAGC 1 cut(s) 343
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 3 cut(s) 5, 822, 919
BsiEI CGRYCG 1 cut(s) 807
BsiHKCI CYCGRG 2 cut(s) 453, 1201
BsiSI CCGG 4 cut(s) 454, 625, 940, 1232
BslFI GGGAC 3 cut(s) 225, 277, 965
BslI CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 3 cut(s) 225, 277, 965
BsmI GAATGC 4 cut(s) 207, 282, 544, 651
BsnI GGCC 3 cut(s) 5, 822, 919
BsoBI CYCGRG 2 cut(s) 453, 1201
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 460, 1208
Bsp143I GATC 4 cut(s) 696, 804, 993, 1235
Bsp19I CCATGG 1 cut(s) 1012
BspACI CCGC 3 cut(s) 251, 435, 597
BspANI GGCC 3 cut(s) 5, 822, 919
BspCNI CTCAG 3 cut(s) 61, 648, 1010
BspLI GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
BspPI GGATC 2 cut(s) 1230, 1243
BspT104I TTCGAA 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 1017
BsrFI RCCGGY 1 cut(s) 624
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 624
BssMI GATC 4 cut(s) 696, 804, 993, 1235
BssT1I CCWWGG 2 cut(s) 1012, 1069
Bst2UI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
Bst4CI ACNGT 4 cut(s) 40, 167, 605, 643
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 626, 903, 987, 1131
BstDEI CTNAG 5 cut(s) 69, 537, 608, 635, 997
BstDSI CCRYGG 1 cut(s) 1012
BstKTI GATC 4 cut(s) 699, 807, 996, 1238
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 4 cut(s) 696, 804, 993, 1235
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 9 cut(s) 305, 541, 579, 800, 907, 916, 986, 1088, 1203
BstNI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
BstNSI RCATGY 3 cut(s) 427, 958, 1133
BstSCI CCNGG 9 cut(s) 221, 235, 266, 415, 452, 453, 1043, 1213, 1231
BstSFI CTRYAG 2 cut(s) 349, 838
BstSLI GKGCMC 1 cut(s) 1208
BstX2I RGATCY 1 cut(s) 1235
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 1 cut(s) 1235
BsuRI GGCC 3 cut(s) 5, 822, 919
BtgI CCRYGG 1 cut(s) 1012
BtgZI GCGATG 1 cut(s) 605
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 3 cut(s) 337, 980, 1005
Cac8I GCNNGC 4 cut(s) 626, 903, 987, 1131
Cfr10I RCCGGY 1 cut(s) 624
Cfr13I GGNCC 3 cut(s) 239, 264, 1187
Cfr9I CCCGGG 1 cut(s) 453
CsiI ACCWGGT 1 cut(s) 1213
Csp6I GTAC 5 cut(s) 421, 644, 709, 958, 1218
CviQI GTAC 5 cut(s) 421, 644, 709, 958, 1218
DdeI CTNAG 5 cut(s) 69, 537, 608, 635, 997
DpnI GATC 4 cut(s) 698, 806, 995, 1237
DpnII GATC 4 cut(s) 696, 804, 993, 1235
EaeI YGGCCR 2 cut(s) 3, 820
Eco130I CCWWGG 2 cut(s) 1012, 1069
Eco24I GRGCYC 1 cut(s) 460
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 3 cut(s) 239, 264, 1187
Eco57I CTGAAG 2 cut(s) 341, 697
Eco88I CYCGRG 2 cut(s) 453, 1201
EcoO109I RGGNCCY 2 cut(s) 239, 1187
EcoRI GAATTC 2 cut(s) 146, 858
EcoRII CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 1012, 1069
EcoT22I ATGCAT 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 1012, 1069
FaqI GGGAC 3 cut(s) 225, 277, 965
FbaI TGATCA 1 cut(s) 696
FblI GTMKAC 1 cut(s) 468
FriOI GRGCYC 1 cut(s) 460
FspBI CTAG 2 cut(s) 137, 971
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 3 cut(s) 5, 822, 919
HapII CCGG 4 cut(s) 454, 625, 940, 1232
HinfI GANTC 3 cut(s) 487, 810, 1065
HpaII CCGG 4 cut(s) 454, 625, 940, 1232
HphI GGTGA 5 cut(s) 184, 319, 416, 623, 877
Hpy166II GTNNAC 5 cut(s) 232, 412, 469, 1003, 1057
Hpy188I TCNGA 5 cut(s) 70, 638, 716, 809, 1064
Hpy188III TCNNGA 5 cut(s) 262, 391, 559, 831, 1185
Hpy8I GTNNAC 5 cut(s) 232, 412, 469, 1003, 1057
HpyAV CCTTC 2 cut(s) 372, 892
HpyCH4III ACNGT 4 cut(s) 40, 167, 605, 643
HpyCH4IV ACGT 2 cut(s) 302, 440
HpyCH4V TGCA 8 cut(s) 120, 299, 544, 873, 980, 1129, 1133, 1160
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 541, 579, 800, 907, 916, 986, 1088, 1203
HpyF3I CTNAG 5 cut(s) 69, 537, 608, 635, 997
HpySE526I ACGT 2 cut(s) 302, 440
KroI GCCGGC 1 cut(s) 624
KroNI GCCGGC 1 cut(s) 626
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 4 cut(s) 696, 804, 993, 1235
LmnI GCTCC 4 cut(s) 140, 463, 532, 1202
LweI GCATC 2 cut(s) 531, 637
MabI ACCWGGT 1 cut(s) 1213
MaeI CTAG 2 cut(s) 137, 971
MaeII ACGT 2 cut(s) 302, 440
MaeIII GTNAC 3 cut(s) 167, 332, 776
MalI GATC 4 cut(s) 698, 806, 995, 1237
MboI GATC 4 cut(s) 696, 804, 993, 1235
MfeI CAATTG 1 cut(s) 82
MflI RGATCY 1 cut(s) 1235
MhlI GDGCHC 2 cut(s) 460, 1208
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 21, 63, 74, 82, 146, 177, 444, 858
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 804, 1074
MnlI CCTC 7 cut(s) 55, 58, 395, 505, 644, 1200, 1210
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 546
MroNI GCCGGC 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 1007
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 35, 210, 443, 657, 914
MslI CAYNNNNRTG 2 cut(s) 200, 587
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 597
MspI CCGG 4 cut(s) 454, 625, 940, 1232
MspR9I CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
MunI CAATTG 1 cut(s) 82
Mva1269I GAATGC 4 cut(s) 207, 282, 544, 651
MvaI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
MwoI GCNNNNNNNGC 9 cut(s) 305, 541, 579, 800, 907, 916, 986, 1088, 1203
NaeI GCCGGC 1 cut(s) 626
NciI CCSGG 3 cut(s) 454, 455, 1233
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 4 cut(s) 696, 804, 993, 1235
NgoMIV GCCGGC 1 cut(s) 624
NlaIV GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
NmeAIII GCCGAG 1 cut(s) 798
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 546
NspI RCATGY 3 cut(s) 427, 958, 1133
NspV TTCGAA 1 cut(s) 479
PaeI GCATGC 1 cut(s) 1133
PasI CCCWGGG 1 cut(s) 416
PciI ACATGT 2 cut(s) 423, 954
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 4 cut(s) 207, 282, 544, 651
PdiI GCCGGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 1 cut(s) 487
PflFI GACNNNGTC 1 cut(s) 603
PflMI CCANNNNNTGG 1 cut(s) 565
Ple19I CGATCG 1 cut(s) 807
PleI GAGTC 2 cut(s) 804, 1073
PpsI GAGTC 2 cut(s) 804, 1073
PpuMI RGGWCCY 2 cut(s) 239, 1187
PscI ACATGT 2 cut(s) 423, 954
Psp1406I AACGTT 2 cut(s) 302, 440
Psp5II RGGWCCY 2 cut(s) 239, 1187
Psp6I CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
PspN4I GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
PspPI GGNCC 3 cut(s) 239, 264, 1187
PspPPI RGGWCCY 2 cut(s) 239, 1187
PsuI RGATCY 1 cut(s) 1235
PsyI GACNNNGTC 1 cut(s) 603
PvuI CGATCG 1 cut(s) 807
RsaI GTAC 5 cut(s) 422, 645, 710, 959, 1219
RsaNI GTAC 5 cut(s) 421, 644, 709, 958, 1218
RseI CAYNNNNRTG 2 cut(s) 200, 587
SaqAI TTAA 5 cut(s) 35, 210, 443, 657, 914
Sau3AI GATC 4 cut(s) 696, 804, 993, 1235
Sau96I GGNCC 3 cut(s) 239, 264, 1187
SchI GAGTC 2 cut(s) 804, 1074
ScrFI CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
SduI GDGCHC 2 cut(s) 460, 1208
SexAI ACCWGGT 1 cut(s) 1213
SfaNI GCATC 2 cut(s) 531, 637
SfcI CTRYAG 2 cut(s) 349, 838
SfuI TTCGAA 1 cut(s) 479
SinI GGWCC 3 cut(s) 239, 264, 1187
SmaI CCCGGG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 200, 587
SmlI CTYRAG 1 cut(s) 1191
SmoI CTYRAG 1 cut(s) 1191
SphI GCATGC 1 cut(s) 1133
Sse9I AATT 8 cut(s) 21, 63, 74, 82, 146, 177, 444, 858
SsiI CCGC 3 cut(s) 251, 435, 597
SspI AATATT 2 cut(s) 661, 947
SspMI CTAG 2 cut(s) 137, 971
StyD4I CCNGG 9 cut(s) 221, 235, 266, 415, 452, 453, 1043, 1213, 1231
StyI CCWWGG 2 cut(s) 1012, 1069
TaaI ACNGT 4 cut(s) 40, 167, 605, 643
TaiI ACGT 2 cut(s) 305, 443
TaqI TCGA 3 cut(s) 428, 479, 856
TasI AATT 8 cut(s) 21, 63, 74, 82, 146, 177, 444, 858
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 5 cut(s) 35, 210, 443, 657, 914
Tru9I TTAA 5 cut(s) 35, 210, 443, 657, 914
TscAI CASTG 3 cut(s) 337, 987, 1005
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 119, 743
TspMI CCCGGG 1 cut(s) 453
TspRI CASTG 3 cut(s) 337, 987, 1005
Tth111I GACNNNGTC 1 cut(s) 603
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 3 cut(s) 239, 264, 1187
XapI RAATTY 2 cut(s) 146, 858
XceI RCATGY 3 cut(s) 427, 958, 1133
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmaI CCCGGG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 2 cut(s) 137, 971
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.