Rh5CG310800

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015575
Physical Location & Seq
Forward (+)
34300260 .. 34302089
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG310800.1

Sequence Viewer

Length: 1212 bp
ATGTACTGGTGTGCATTAATTCTCATACTGACCTTGTCCTCCTCCTCTCTCGCCACCTCTGCTCATAAGAGAACCAATATTTGTATTCCCATCAACCCCAAGAACATCACCAACTGCAAGAAACTACTCACTTTGGGAGCTGAGCTCGGCTGGAACATCCACAACGAAACCCACATTGACATCTTGTTCACCATTCCAATATCTATGGACGACACACCAAAATGGGTCGCCTGGGGTGTGAACCCGCGTCGGAAAAGGCCGCGGATGATCGGAACCAGGGCCATTATCGCCGTTTCACAGGCCAACGGGACTTTGAAGGTCAGCAGATACAACATCACCAGTGACACCAAGCTGGGATGTCGTTTGCAACCTCTGCAGCCTTCCATAGAGTTCGAGGATGTCGTCGTCCAAAACATGACAGGTGATGTGAAACCTAACAGATACATGTCAATTTTTGCGACGCTAATTTTGCGTCCAGATTTAGCTGCGTACGACATTGCAAGGTTGAACCATGTGTGGCAAGTTGGCTATGAAGCTGATGAGGTTGCTCTGGAGCCTAAGATGCACCCGACGGCTCTCCAGAACGTGGATAGCACAGAGACTACAAACTTGTACAGTTGGAAAGGTATCAGCATTGGACATCGCCGGCATCATCTTAGAACGGTGCATGGGATTCTGAATATTGTGGGATGGGGAACATTGTTGCCCTTTGGAGTGATTATAGCGAGGTACTGCAGAAGATATCCCTTTCATTGTAAACATTGGTTTTCATCGCACGTCTCTTGTCAGATCGTTGGTTACATTCTCGGCACGATTGGTTGGGCAATCGGAATATGGCTTGGACATGCTTCCAAAGAATATCACTTCCACACTCACAATATTCTCGCCATGTTCATATTTGCATTTACAACATTACAAATGATTGCTCTGCGTTTAAGGCCAACGCCAACAGATGATTACCGGAAATACTGGGACATGTACCATCATTTTCTGGGCTACGCACTTCTGGCTGTGATCATATTGAATATATTCCATGGCATTGCCATTTTGAAGCCAGACAAAACCTGGCTATGTGCTTATATTGGAATCCTTGCAGTGCTTGCTTCCATCACATTGGGTTTGGAGATTTATACTTGGTGTAAATTCATCAATTCCAAAATGAAGAACACTTCCGGAGAAGTTCAATCTAGTAGTCAGTCTCATACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

403

Amino Acids

45.81

Weight (kDa)

9.37

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 89 - 204 7.5e-19 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23200
malus_domestica MD03G1196700.v1.1 MD11G1212800.v1.1
prunus_persica Prupe.4G218700_v2.0.a1
pyrus_communis pycom11g18780
rosa_laevigata RLG00000034009
rosa_multiflora Rmu_sc0004953.1_g000005 Rmu_sc0004953.1_g000008
rosa_roxburghii Rroxscaffold_1G00039840
rosa_rugosa Rorug05G0188200 Rorug05G0220100
rosa_samantha Rh5AG273700 Rh5BG278800 Rh5CG310800 Rh5DG287000
rosa_wichuraiana Rw5G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 586
AccII CGCG 2 cut(s) 247, 262
AccIII TCCGGA 1 cut(s) 1172
AciI CCGC 3 cut(s) 245, 260, 262
AcsI RAATTY 1 cut(s) 1142
AfaI GTAC 5 cut(s) 5, 491, 614, 731, 980
AfiI CCNNNNNNNGG 1 cut(s) 586
AflIII ACRYGT 2 cut(s) 444, 975
AgsI TTSAA 5 cut(s) 316, 508, 1024, 1051, 1184
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 3 cut(s) 230, 275, 1064
AluBI AGCT 5 cut(s) 140, 145, 352, 485, 536
AluI AGCT 5 cut(s) 140, 145, 352, 485, 536
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 3 cut(s) 593, 784, 1203
Aor13HI TCCGGA 1 cut(s) 1172
AoxI GGCC 4 cut(s) 257, 279, 300, 938
ApeKI GCWGC 2 cut(s) 376, 485
ApoI RAATTY 1 cut(s) 1142
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AseI ATTAAT 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 1028
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 4 cut(s) 100, 181, 328, 434
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 388, 472
BccI CCATC 4 cut(s) 98, 684, 990, 1115
BceAI ACGGC 2 cut(s) 275, 588
BciT130I CCWGG 3 cut(s) 232, 277, 1066
BclI TGATCA 1 cut(s) 1014
BcoDI GTCTC 3 cut(s) 593, 784, 1203
BfaI CTAG 1 cut(s) 1188
BfmI CTRYAG 2 cut(s) 374, 733
BisI GCNGC 3 cut(s) 260, 377, 486
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 3 cut(s) 261, 378, 487
Bme1390I CCNGG 3 cut(s) 232, 277, 1066
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 2 cut(s) 274, 555
BmrFI CCNGG 3 cut(s) 232, 277, 1066
BmrI ACTGGG 1 cut(s) 979
BmsI GCATC 2 cut(s) 552, 658
BmuI ACTGGG 1 cut(s) 979
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 2 cut(s) 563, 572
Bpu1102I GCTNAGC 1 cut(s) 141
BsaJI CCNNGG 4 cut(s) 231, 260, 276, 1033
BsaWI WCCGGW 2 cut(s) 960, 1172
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 1 cut(s) 645
Bse1I ACTGG 3 cut(s) 11, 339, 974
Bse3DI GCAATG 2 cut(s) 495, 1038
BseAI TCCGGA 1 cut(s) 1172
BseBI CCWGG 3 cut(s) 232, 277, 1066
BseDI CCNNGG 4 cut(s) 231, 260, 276, 1033
BseGI GGATG 5 cut(s) 156, 270, 362, 403, 695
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 495, 1038
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 3 cut(s) 11, 339, 974
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 2 cut(s) 388, 472
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 2 cut(s) 247, 262
BshFI GGCC 4 cut(s) 259, 281, 302, 940
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 3 cut(s) 646, 961, 1173
BsiWI CGTACG 1 cut(s) 489
BslFI GGGAC 2 cut(s) 322, 986
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 3 cut(s) 593, 784, 1203
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 2 cut(s) 322, 986
BsnI GGCC 4 cut(s) 259, 281, 302, 940
Bsp1286I GDGCHC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 1172
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 3 cut(s) 267, 789, 1014
Bsp1720I GCTNAGC 1 cut(s) 141
Bsp19I CCATGG 1 cut(s) 1033
BspACI CCGC 3 cut(s) 245, 260, 262
BspANI GGCC 4 cut(s) 259, 281, 302, 940
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 1172
BspFNI CGCG 2 cut(s) 247, 262
BspLI GGNNCC 2 cut(s) 274, 555
BspMAI CTGCAG 2 cut(s) 378, 737
BsrDI GCAATG 2 cut(s) 495, 1038
BsrFI RCCGGY 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 3 cut(s) 11, 339, 974
BssAI RCCGGY 1 cut(s) 645
BssECI CCNNGG 4 cut(s) 231, 260, 276, 1033
BssMI GATC 3 cut(s) 267, 789, 1014
BssT1I CCWWGG 1 cut(s) 1033
Bst2UI CCWGG 3 cut(s) 232, 277, 1066
Bst4CI ACNGT 2 cut(s) 617, 664
BstAPI GCANNNNNTGC 2 cut(s) 373, 1100
BstAUI TGTACA 1 cut(s) 612
BstC8I GCNNGC 2 cut(s) 647, 1101
BstDEI CTNAG 4 cut(s) 141, 558, 656, 1209
BstDSI CCRYGG 2 cut(s) 260, 1033
BstF5I GGATG 5 cut(s) 156, 270, 362, 403, 695
BstFNI CGCG 2 cut(s) 247, 262
BstKTI GATC 3 cut(s) 270, 792, 1017
BstMAI GTCTC 3 cut(s) 593, 784, 1203
BstMBI GATC 3 cut(s) 267, 789, 1014
BstMWI GCNNNNNNNGC 8 cut(s) 59, 287, 373, 469, 562, 937, 1007, 1100
BstNI CCWGG 3 cut(s) 232, 277, 1066
BstNSI RCATGY 3 cut(s) 448, 848, 979
BstSCI CCNGG 3 cut(s) 230, 275, 1064
BstSFI CTRYAG 2 cut(s) 374, 733
BstUI CGCG 2 cut(s) 247, 262
BstV1I GCAGC 2 cut(s) 388, 472
BstXI CCANNNNNNTGG 1 cut(s) 1114
BsuRI GGCC 4 cut(s) 259, 281, 302, 940
BtgI CCRYGG 2 cut(s) 260, 1033
BtgZI GCGATG 2 cut(s) 626, 756
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 5 cut(s) 156, 270, 362, 403, 695
BtsI GCAGTG 1 cut(s) 1101
BtsIMutI CAGTG 2 cut(s) 346, 1101
Cac8I GCNNGC 2 cut(s) 647, 1101
Cfr10I RCCGGY 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 279
Cfr42I CCGCGG 1 cut(s) 263
CseI GACGC 3 cut(s) 236, 461, 469
Csp6I GTAC 5 cut(s) 4, 490, 613, 730, 979
CviAII CATG 8 cut(s) 415, 445, 512, 668, 845, 889, 976, 1034
CviQI GTAC 5 cut(s) 4, 490, 613, 730, 979
DdeI CTNAG 4 cut(s) 141, 558, 656, 1209
DpnI GATC 3 cut(s) 269, 791, 1016
DpnII GATC 3 cut(s) 267, 789, 1014
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 1033
Eco24I GRGCYC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 743
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 3 cut(s) 230, 275, 1064
EcoRV GATATC 1 cut(s) 743
EcoT14I CCWWGG 1 cut(s) 1033
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 1033
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 8 cut(s) 418, 448, 515, 671, 848, 892, 979, 1037
FaqI GGGAC 2 cut(s) 322, 986
FatI CATG 8 cut(s) 414, 444, 511, 667, 844, 888, 975, 1033
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 1 cut(s) 1014
Fnu4HI GCNGC 3 cut(s) 260, 377, 486
FokI GGATG 5 cut(s) 143, 277, 369, 410, 702
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 260, 377, 486
FspBI CTAG 1 cut(s) 1188
GluI GCNGC 3 cut(s) 260, 377, 486
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 2 cut(s) 563, 572
HaeIII GGCC 4 cut(s) 259, 281, 302, 940
HapII CCGG 3 cut(s) 646, 961, 1173
HgaI GACGC 3 cut(s) 236, 461, 469
Hin1II CATG 8 cut(s) 418, 448, 515, 671, 848, 892, 979, 1037
HinfI GANTC 2 cut(s) 673, 1086
HpaII CCGG 3 cut(s) 646, 961, 1173
HphI GGTGA 4 cut(s) 100, 181, 328, 434
Hpy166II GTNNAC 3 cut(s) 189, 241, 758
Hpy188I TCNGA 5 cut(s) 252, 272, 678, 789, 830
Hpy188III TCNNGA 4 cut(s) 476, 551, 580, 1173
Hpy8I GTNNAC 3 cut(s) 189, 241, 758
Hpy99I CGWCG 4 cut(s) 252, 407, 463, 574
HpyAV CCTTC 2 cut(s) 310, 390
HpyCH4III ACNGT 2 cut(s) 617, 664
HpyCH4IV ACGT 2 cut(s) 585, 777
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 287, 373, 469, 562, 937, 1007, 1100
HpyF3I CTNAG 4 cut(s) 141, 558, 656, 1209
HpySE526I ACGT 2 cut(s) 585, 777
Hsp92II CATG 8 cut(s) 418, 448, 515, 671, 848, 892, 979, 1037
Kpn2I TCCGGA 1 cut(s) 1172
KroI GCCGGC 1 cut(s) 645
KroNI GCCGGC 1 cut(s) 647
Ksp22I TGATCA 1 cut(s) 1014
KspI CCGCGG 1 cut(s) 263
Kzo9I GATC 3 cut(s) 267, 789, 1014
LmnI GCTCC 2 cut(s) 137, 553
Lsp1109I GCAGC 2 cut(s) 388, 472
LweI GCATC 2 cut(s) 552, 658
MaeI CTAG 1 cut(s) 1188
MaeII ACGT 2 cut(s) 585, 777
MaeIII GTNAC 2 cut(s) 341, 797
MalI GATC 3 cut(s) 269, 791, 1016
MboI GATC 3 cut(s) 267, 789, 1014
MboII GAAGA 2 cut(s) 750, 1174
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 5 cut(s) 18, 450, 465, 1142, 1150
MmeI TCCRAC 2 cut(s) 230, 599
MnlI CCTC 8 cut(s) 49, 52, 55, 67, 381, 388, 535, 720
MroI TCCGGA 1 cut(s) 1172
MroNI GCCGGC 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 1028
MseI TTAA 2 cut(s) 17, 935
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 3 cut(s) 646, 961, 1173
MspR9I CCNGG 3 cut(s) 232, 277, 1066
MvaI CCWGG 3 cut(s) 232, 277, 1066
MvnI CGCG 2 cut(s) 247, 262
MwoI GCNNNNNNNGC 8 cut(s) 59, 287, 373, 469, 562, 937, 1007, 1100
NaeI GCCGGC 1 cut(s) 647
NcoI CCATGG 1 cut(s) 1033
NdeII GATC 3 cut(s) 267, 789, 1014
NgoMIV GCCGGC 1 cut(s) 645
NlaIII CATG 8 cut(s) 418, 448, 515, 671, 848, 892, 979, 1037
NlaIV GGNNCC 2 cut(s) 274, 555
NmeAIII GCCGAG 2 cut(s) 126, 786
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 3 cut(s) 448, 848, 979
PciI ACATGT 2 cut(s) 444, 975
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 647
PdmI GAANNNNTTC 1 cut(s) 1028
PfeI GAWTC 2 cut(s) 673, 1086
Pfl23II CGTACG 1 cut(s) 489
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 586
PkrI GCNGC 3 cut(s) 261, 378, 487
PscI ACATGT 2 cut(s) 444, 975
PshBI ATTAAT 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 3 cut(s) 230, 275, 1064
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 3 cut(s) 230, 275, 1064
PspLI CGTACG 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 274, 555
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 2 cut(s) 378, 737
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 5 cut(s) 5, 491, 614, 731, 980
RsaNI GTAC 5 cut(s) 4, 490, 613, 730, 979
RseI CAYNNNNRTG 1 cut(s) 220
SacI GAGCTC 1 cut(s) 147
SacII CCGCGG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 17, 935
SatI GCNGC 3 cut(s) 260, 377, 486
Sau3AI GATC 3 cut(s) 267, 789, 1014
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 232, 277, 1066
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 2 cut(s) 552, 658
SfcI CTRYAG 2 cut(s) 374, 733
Sfr303I CCGCGG 1 cut(s) 263
SgrBI CCGCGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 5 cut(s) 18, 450, 465, 1142, 1150
SsiI CCGC 3 cut(s) 245, 260, 262
SspI AATATT 3 cut(s) 79, 682, 880
SspMI CTAG 1 cut(s) 1188
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 230, 275, 1064
StyI CCWWGG 1 cut(s) 1033
TaaI ACNGT 2 cut(s) 617, 664
TaiI ACGT 2 cut(s) 588, 780
TaqI TCGA 1 cut(s) 393
TasI AATT 5 cut(s) 18, 450, 465, 1142, 1150
TatI WGTACW 2 cut(s) 3, 612
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 2 cut(s) 673, 1086
Tru1I TTAA 2 cut(s) 17, 935
Tru9I TTAA 2 cut(s) 17, 935
TscAI CASTG 2 cut(s) 346, 1101
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 376, 485
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 6 cut(s) 546, 740, 759, 883, 1135, 1175
TspRI CASTG 2 cut(s) 346, 1101
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 586
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 1 cut(s) 1142
XceI RCATGY 3 cut(s) 448, 848, 979
XcmI CCANNNNNNNNNTGG 1 cut(s) 1062
XmnI GAANNNNTTC 1 cut(s) 1028
XspI CTAG 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.