Rh5AG273700

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015575
Physical Location & Seq
Forward (+)
36630598 .. 36633988
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG273700.1

Sequence Viewer

Length: 930 bp
ATGTGCTGGTGTGCATTAATTCTCGTACTGACCTTGTCCTCCTCCTCTCTCGTCACCACTGCTCATAAGAAAGCCAATATTTGTACTCCCATCAACCCCATGAACATCACCAACTGCAAGAAACTACTCACTTTGGGAGCTGAACTCGGCTGGAACATCCACAACGAAACCCACATTGACATCTTGTTCACCATTCCAATATCTATGGACGACACACCAAAATGGGTCGCCTGGGGTGTGAACCCGCGTCGGAAAAGGCCGCGGATGATCGGAACCAGGGCCATTATCGCCGTTTCACAGGCCAACGGGACTTTGAAGGTCAGCAGATACAACATCACCAGTGACACCAAGCTGGGATGTCGTTTGCAGCCTCTGGAGCCTTCCAAAGAGTTCGAGGATGTCGTCGTCCAAAACATGACAGGTGATGTGAAACCTAACAGATACATGTCAATTTTTGCGACGCTAATTTTGCGTCCAGATTTAGCTGCGTACGACATTGCAAGGTTGAACCATGTGTGGCAAGTTGGGTATGAAGCTGATGAGGTTGCTCTGGAGCCTAAGATGCACCCGACGGCTCTCCAGAACGTGGATAGCACAGAGACTACAAACTTGCACAGTTGGAAAGGTATCAGCATTGGACATCGCCGGCAACATCTTAGAACGGTGCATGGGATTCTGAATATTGTGGGATGGGGAACATTGTTGCCCTTTGGAGTGATTATAGCGAGGTACTGCAGAAGATATCCCTTTCAATGTACACATTGGTTTTTATCGCACGTCTCTTGTCAGATCGTTGGTTACATTCTCGGCACGATTGGTTGGGCAATCGGAATATGGCTCGGAAATGCTTCCAAAGAATATCACTTCCACACTCACAATATTCTCGCCATGTTCATATTTGCATTTACAACATTACAAGTAATTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

309

Amino Acids

34.95

Weight (kDa)

9.22

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 89 - 204 1.5e-18 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23200
malus_domestica MD03G1196700.v1.1 MD11G1212800.v1.1
prunus_persica Prupe.4G218700_v2.0.a1
pyrus_communis pycom11g18780
rosa_laevigata RLG00000034009
rosa_multiflora Rmu_sc0004953.1_g000005 Rmu_sc0004953.1_g000008
rosa_roxburghii Rroxscaffold_1G00039840
rosa_rugosa Rorug05G0188200 Rorug05G0220100
rosa_samantha Rh5AG273700 Rh5BG278800 Rh5CG310800 Rh5DG287000
rosa_wichuraiana Rw5G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 586
AccII CGCG 2 cut(s) 247, 262
AciI CCGC 3 cut(s) 245, 260, 262
AfaI GTAC 5 cut(s) 27, 85, 491, 731, 757
AfiI CCNNNNNNNGG 1 cut(s) 586
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 3 cut(s) 316, 508, 752
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 2 cut(s) 230, 275
AluBI AGCT 4 cut(s) 140, 352, 485, 536
AluI AGCT 4 cut(s) 140, 352, 485, 536
Alw26I GTCTC 2 cut(s) 593, 784
AlwNI CAGNNNCTG 1 cut(s) 373
AoxI GGCC 3 cut(s) 257, 279, 300
ApeKI GCWGC 2 cut(s) 367, 485
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AseI ATTAAT 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 847
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 5 cut(s) 46, 100, 181, 328, 434
BbvI GCAGC 2 cut(s) 379, 472
BccI CCATC 2 cut(s) 98, 684
BceAI ACGGC 2 cut(s) 275, 588
BciT130I CCWGG 2 cut(s) 232, 277
BcoDI GTCTC 2 cut(s) 593, 784
BfmI CTRYAG 1 cut(s) 733
BisI GCNGC 3 cut(s) 260, 368, 486
BlsI GCNGC 3 cut(s) 261, 369, 487
Bme1390I CCNGG 2 cut(s) 232, 277
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 274, 378, 555
BmrFI CCNGG 2 cut(s) 232, 277
BmsI GCATC 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 3 cut(s) 395, 563, 572
BsaJI CCNNGG 3 cut(s) 231, 260, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 1 cut(s) 645
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 495
BseBI CCWGG 2 cut(s) 232, 277
BseDI CCNNGG 3 cut(s) 231, 260, 276
BseGI GGATG 5 cut(s) 156, 270, 362, 403, 695
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 2 cut(s) 379, 472
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 2 cut(s) 247, 262
BshFI GGCC 3 cut(s) 259, 281, 302
BsiSI CCGG 1 cut(s) 646
BsiWI CGTACG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 2 cut(s) 593, 784
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 3 cut(s) 259, 281, 302
Bsp1407I TGTACA 1 cut(s) 755
Bsp143I GATC 2 cut(s) 267, 789
BspACI CCGC 3 cut(s) 245, 260, 262
BspANI GGCC 3 cut(s) 259, 281, 302
BspFNI CGCG 2 cut(s) 247, 262
BspLI GGNNCC 3 cut(s) 274, 378, 555
BspMAI CTGCAG 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 645
BsrGI TGTACA 1 cut(s) 755
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 645
BssECI CCNNGG 3 cut(s) 231, 260, 276
BssMI GATC 2 cut(s) 267, 789
Bst2UI CCWGG 2 cut(s) 232, 277
Bst4CI ACNGT 2 cut(s) 617, 664
BstAUI TGTACA 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 2 cut(s) 558, 656
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 5 cut(s) 156, 270, 362, 403, 695
BstFNI CGCG 2 cut(s) 247, 262
BstKTI GATC 2 cut(s) 270, 792
BstMAI GTCTC 2 cut(s) 593, 784
BstMBI GATC 2 cut(s) 267, 789
BstMWI GCNNNNNNNGC 4 cut(s) 287, 376, 469, 562
BstNI CCWGG 2 cut(s) 232, 277
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 230, 275
BstSFI CTRYAG 1 cut(s) 733
BstUI CGCG 2 cut(s) 247, 262
BstV1I GCAGC 2 cut(s) 379, 472
BsuRI GGCC 3 cut(s) 259, 281, 302
BtgI CCRYGG 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 626
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 5 cut(s) 156, 270, 362, 403, 695
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 3 cut(s) 57, 346, 925
Cac8I GCNNGC 1 cut(s) 647
CaiI CAGNNNCTG 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 279
Cfr42I CCGCGG 1 cut(s) 263
CseI GACGC 3 cut(s) 236, 461, 469
Csp6I GTAC 5 cut(s) 26, 84, 490, 730, 756
CviAII CATG 6 cut(s) 100, 415, 445, 512, 668, 889
CviQI GTAC 5 cut(s) 26, 84, 490, 730, 756
DdeI CTNAG 2 cut(s) 558, 656
DpnI GATC 2 cut(s) 269, 791
DpnII GATC 2 cut(s) 267, 789
Eco32I GATATC 1 cut(s) 743
EcoRII CCWGG 2 cut(s) 230, 275
EcoRV GATATC 1 cut(s) 743
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 6 cut(s) 103, 418, 448, 515, 671, 892
FaqI GGGAC 1 cut(s) 322
FatI CATG 6 cut(s) 99, 414, 444, 511, 667, 888
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 260, 368, 486
FokI GGATG 5 cut(s) 143, 277, 369, 410, 702
Fsp4HI GCNGC 3 cut(s) 260, 368, 486
GluI GCNGC 3 cut(s) 260, 368, 486
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 3 cut(s) 395, 563, 572
HaeIII GGCC 3 cut(s) 259, 281, 302
HapII CCGG 1 cut(s) 646
HgaI GACGC 3 cut(s) 236, 461, 469
Hin1II CATG 6 cut(s) 103, 418, 448, 515, 671, 892
HinfI GANTC 1 cut(s) 673
HpaII CCGG 1 cut(s) 646
HphI GGTGA 5 cut(s) 46, 100, 181, 328, 434
Hpy166II GTNNAC 3 cut(s) 189, 241, 758
Hpy188I TCNGA 6 cut(s) 252, 272, 678, 789, 830, 842
Hpy188III TCNNGA 4 cut(s) 374, 476, 551, 580
Hpy8I GTNNAC 3 cut(s) 189, 241, 758
Hpy99I CGWCG 4 cut(s) 252, 407, 463, 574
HpyAV CCTTC 2 cut(s) 310, 390
HpyCH4III ACNGT 2 cut(s) 617, 664
HpyCH4IV ACGT 2 cut(s) 585, 777
HpyCH4V TGCA 9 cut(s) 14, 117, 367, 500, 565, 613, 667, 735, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 376, 469, 562
HpyF3I CTNAG 2 cut(s) 558, 656
HpySE526I ACGT 2 cut(s) 585, 777
Hsp92II CATG 6 cut(s) 103, 418, 448, 515, 671, 892
KroI GCCGGC 1 cut(s) 645
KroNI GCCGGC 1 cut(s) 647
KspI CCGCGG 1 cut(s) 263
Kzo9I GATC 2 cut(s) 267, 789
LmnI GCTCC 3 cut(s) 137, 376, 553
Lsp1109I GCAGC 2 cut(s) 379, 472
LweI GCATC 1 cut(s) 552
MaeII ACGT 2 cut(s) 585, 777
MaeIII GTNAC 3 cut(s) 52, 341, 797
MalI GATC 2 cut(s) 269, 791
MboI GATC 2 cut(s) 267, 789
MboII GAAGA 1 cut(s) 750
MluCI AATT 4 cut(s) 18, 450, 465, 921
MmeI TCCRAC 2 cut(s) 230, 599
MnlI CCTC 7 cut(s) 49, 52, 55, 381, 388, 535, 720
MroNI GCCGGC 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 847
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 646
MspR9I CCNGG 2 cut(s) 232, 277
MvaI CCWGG 2 cut(s) 232, 277
MvnI CGCG 2 cut(s) 247, 262
MwoI GCNNNNNNNGC 4 cut(s) 287, 376, 469, 562
NaeI GCCGGC 1 cut(s) 647
NdeII GATC 2 cut(s) 267, 789
NgoMIV GCCGGC 1 cut(s) 645
NlaIII CATG 6 cut(s) 103, 418, 448, 515, 671, 892
NlaIV GGNNCC 3 cut(s) 274, 378, 555
NmeAIII GCCGAG 2 cut(s) 126, 786
NmuCI GTSAC 2 cut(s) 52, 341
NspI RCATGY 1 cut(s) 448
PciI ACATGT 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 647
PdmI GAANNNNTTC 1 cut(s) 847
PfeI GAWTC 1 cut(s) 673
Pfl23II CGTACG 1 cut(s) 489
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 586
PkrI GCNGC 3 cut(s) 261, 369, 487
PscI ACATGT 1 cut(s) 444
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 230, 275
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 2 cut(s) 230, 275
PspLI CGTACG 1 cut(s) 489
PspN4I GGNNCC 3 cut(s) 274, 378, 555
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 5 cut(s) 27, 85, 491, 731, 757
RsaNI GTAC 5 cut(s) 26, 84, 490, 730, 756
RseI CAYNNNNRTG 1 cut(s) 220
SacII CCGCGG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 3 cut(s) 260, 368, 486
Sau3AI GATC 2 cut(s) 267, 789
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 232, 277
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 733
Sfr303I CCGCGG 1 cut(s) 263
SgrBI CCGCGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 4 cut(s) 18, 450, 465, 921
SsiI CCGC 3 cut(s) 245, 260, 262
SspI AATATT 3 cut(s) 79, 682, 880
StyD4I CCNGG 2 cut(s) 230, 275
TaaI ACNGT 2 cut(s) 617, 664
TaiI ACGT 2 cut(s) 588, 780
TaqI TCGA 1 cut(s) 393
TasI AATT 4 cut(s) 18, 450, 465, 921
TatI WGTACW 2 cut(s) 83, 755
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 1 cut(s) 673
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 2 cut(s) 64, 346
TseFI GTSAC 2 cut(s) 52, 341
TseI GCWGC 2 cut(s) 367, 485
Tsp45I GTSAC 2 cut(s) 52, 341
TspDTI ATGAA 3 cut(s) 116, 546, 883
TspRI CASTG 2 cut(s) 64, 346
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 586
VspI ATTAAT 1 cut(s) 17
XceI RCATGY 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.