Rmu_sc0004953.1_g000005

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004953.1
OG0015575
Physical Location & Seq
Reverse (-)
7408 .. 9254
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004953.1_g000005.1.cds

Sequence Viewer

Length: 1227 bp
atgtgctggtgtgcattaattctcgtactgaccttgtcctcctcctctctcgtcaccactgctcataagaaagccaatatttgtactcccatcaaccccatgaacatcaccaactgcaagaaactactcactttgggagctgaactcggctggaacatccacaacgaaacccacattgacatcttgttcaccattccaatatctatggacgacacaccaaaatgggtcgcctggggtgtgaacccgcgtcggaaaaggccgcggatgatcggaaccagggccattatcgccgtttcacaggccaacgggactttgaaggtcagcagatacaacatcaccagtgacaccaagctgggatgtcgtttgcagcctctggagccttccaaagagttcgaggatgtcgtcgtgcaaaacatgacaggtgatgtgaaacctaacagatacatgtcaatttttgcgacgctaattttgcgtccagatttagctcatgcgtacgacattgcaaggttgaaccatgtgtggcaagttgggtatgaagctgatgaggttgctctggagcctaagatgcacccgacggctctccagaacgtggatagcacagagactacaaacttgcacagtcggaaaggtatcagcattggacatcgccggcgtcatcttagaacggtgcatgggattctgaatattgtgggatggggaacattgttgccctttggagtgattatagcgaggtactgcagaagatatccctttcaatgtacacattggtttttatcgcacgtctcttgtcagatcgttggttacattctcggcacgattggttgggcaatcggaatatggctcggacatgcttccaaagaatatcacttccacactcacaatattctcgccatgttcatatttgcatttacaacattacaaatgattgctctgcgtttaaggccaacgccaacagatgattaccggaaatactgggacatgtaccatcattttctgggctacgcacttttggctgtgatcatattgaatatattccatggcattgccattttgaagccagacaaaacctggctatgggcttatattggaatccttgcagtgcttgcttccatcacattgggtttggagatttatacttggtgtaaattcatgaaatccaaaatgaagaaagcaaacaattccggagaagttcaacctgcagttagtagtcagtctcatacctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

408

Amino Acids

46.33

Weight (kDa)

9.48

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23200
malus_domestica MD03G1196700.v1.1 MD11G1212800.v1.1
prunus_persica Prupe.4G218700_v2.0.a1
pyrus_communis pycom11g18780
rosa_laevigata RLG00000034009
rosa_multiflora Rmu_sc0004953.1_g000005 Rmu_sc0004953.1_g000008
rosa_roxburghii Rroxscaffold_1G00039840
rosa_rugosa Rorug05G0188200 Rorug05G0220100
rosa_samantha Rh5AG273700 Rh5BG278800 Rh5CG310800 Rh5DG287000
rosa_wichuraiana Rw5G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1204
AccB7I CCANNNNNTGG 1 cut(s) 589
AccII CGCG 2 cut(s) 247, 262
AccIII TCCGGA 1 cut(s) 1181
AciI CCGC 3 cut(s) 245, 260, 262
AcsI RAATTY 1 cut(s) 1145
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 6 cut(s) 27, 85, 494, 734, 760, 983
AfiI CCNNNNNNNGG 2 cut(s) 589, 1074
AflIII ACRYGT 2 cut(s) 444, 978
AgsI TTSAA 6 cut(s) 316, 511, 755, 1027, 1054, 1193
AjiI CACGTC 1 cut(s) 781
AjnI CCWGG 3 cut(s) 230, 275, 1067
AluBI AGCT 4 cut(s) 140, 352, 485, 539
AluI AGCT 4 cut(s) 140, 352, 485, 539
Alw26I GTCTC 3 cut(s) 596, 787, 1218
AlwNI CAGNNNCTG 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 1181
AoxI GGCC 4 cut(s) 257, 279, 300, 941
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 1145
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AseI ATTAAT 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 1031
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 5 cut(s) 46, 100, 181, 328, 434
BbvI GCAGC 1 cut(s) 379
BccI CCATC 4 cut(s) 98, 687, 993, 1118
BceAI ACGGC 2 cut(s) 275, 591
BciT130I CCWGG 3 cut(s) 232, 277, 1069
BclI TGATCA 1 cut(s) 1017
BcoDI GTCTC 3 cut(s) 596, 787, 1218
BfmI CTRYAG 2 cut(s) 736, 1197
BfuAI ACCTGC 1 cut(s) 1204
BisI GCNGC 2 cut(s) 260, 368
BlsI GCNGC 2 cut(s) 261, 369
Bme1390I CCNGG 3 cut(s) 232, 277, 1069
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 274, 378, 558
BmrFI CCNGG 3 cut(s) 232, 277, 1069
BmrI ACTGGG 1 cut(s) 982
BmsI GCATC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 982
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 3 cut(s) 395, 566, 575
BsaHI GRCGYC 1 cut(s) 652
BsaJI CCNNGG 4 cut(s) 231, 260, 276, 1036
BsaWI WCCGGW 2 cut(s) 963, 1181
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 1074
Bse118I RCCGGY 1 cut(s) 648
Bse1I ACTGG 2 cut(s) 339, 977
Bse3DI GCAATG 2 cut(s) 498, 1041
BseAI TCCGGA 1 cut(s) 1181
BseBI CCWGG 3 cut(s) 232, 277, 1069
BseDI CCNNGG 4 cut(s) 231, 260, 276, 1036
BseGI GGATG 5 cut(s) 156, 270, 362, 403, 698
BseLI CCNNNNNNNGG 2 cut(s) 589, 1074
BseMI GCAATG 2 cut(s) 498, 1041
BseNI ACTGG 2 cut(s) 339, 977
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 2 cut(s) 247, 262
BshFI GGCC 4 cut(s) 259, 281, 302, 943
BsiSI CCGG 3 cut(s) 649, 964, 1182
BsiWI CGTACG 1 cut(s) 492
BslFI GGGAC 2 cut(s) 322, 989
BslI CCNNNNNNNGG 2 cut(s) 589, 1074
BsmAI GTCTC 3 cut(s) 596, 787, 1218
BsmBI CGTCTC 1 cut(s) 787
BsmFI GGGAC 2 cut(s) 322, 989
BsnI GGCC 4 cut(s) 259, 281, 302, 943
Bsp13I TCCGGA 1 cut(s) 1181
Bsp1407I TGTACA 1 cut(s) 758
Bsp143I GATC 3 cut(s) 267, 792, 1017
Bsp19I CCATGG 1 cut(s) 1036
BspACI CCGC 3 cut(s) 245, 260, 262
BspANI GGCC 4 cut(s) 259, 281, 302, 943
BspEI TCCGGA 1 cut(s) 1181
BspFNI CGCG 2 cut(s) 247, 262
BspHI TCATGA 1 cut(s) 1149
BspLI GGNNCC 3 cut(s) 274, 378, 558
BspMAI CTGCAG 2 cut(s) 740, 1201
BspMI ACCTGC 1 cut(s) 1204
BsrDI GCAATG 2 cut(s) 498, 1041
BsrFI RCCGGY 1 cut(s) 648
BsrGI TGTACA 1 cut(s) 758
BsrI ACTGG 2 cut(s) 339, 977
BssAI RCCGGY 1 cut(s) 648
BssECI CCNNGG 4 cut(s) 231, 260, 276, 1036
BssMI GATC 3 cut(s) 267, 792, 1017
BssNI GRCGYC 1 cut(s) 652
BssT1I CCWWGG 1 cut(s) 1036
Bst2UI CCWGG 3 cut(s) 232, 277, 1069
Bst4CI ACNGT 2 cut(s) 620, 667
BstACI GRCGYC 1 cut(s) 652
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 758
BstC8I GCNNGC 2 cut(s) 650, 1104
BstDEI CTNAG 3 cut(s) 561, 659, 1224
BstDSI CCRYGG 2 cut(s) 260, 1036
BstF5I GGATG 5 cut(s) 156, 270, 362, 403, 698
BstFNI CGCG 2 cut(s) 247, 262
BstKTI GATC 3 cut(s) 270, 795, 1020
BstMAI GTCTC 3 cut(s) 596, 787, 1218
BstMBI GATC 3 cut(s) 267, 792, 1017
BstMWI GCNNNNNNNGC 7 cut(s) 287, 376, 469, 565, 940, 1010, 1103
BstNI CCWGG 3 cut(s) 232, 277, 1069
BstNSI RCATGY 3 cut(s) 448, 851, 982
BstSCI CCNGG 3 cut(s) 230, 275, 1067
BstSFI CTRYAG 2 cut(s) 736, 1197
BstUI CGCG 2 cut(s) 247, 262
BstV1I GCAGC 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 1117
BsuRI GGCC 4 cut(s) 259, 281, 302, 943
BtgI CCRYGG 2 cut(s) 260, 1036
BtgZI GCGATG 1 cut(s) 629
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 5 cut(s) 156, 270, 362, 403, 698
BtsI GCAGTG 2 cut(s) 57, 1104
BtsIMutI CAGTG 3 cut(s) 57, 346, 1104
BveI ACCTGC 1 cut(s) 1204
Cac8I GCNNGC 2 cut(s) 650, 1104
CaiI CAGNNNCTG 1 cut(s) 373
CciI TCATGA 1 cut(s) 1149
Cfr10I RCCGGY 1 cut(s) 648
Cfr13I GGNCC 1 cut(s) 279
Cfr42I CCGCGG 1 cut(s) 263
CseI GACGC 4 cut(s) 236, 461, 469, 641
Csp6I GTAC 6 cut(s) 26, 84, 493, 733, 759, 982
CviQI GTAC 6 cut(s) 26, 84, 493, 733, 759, 982
DdeI CTNAG 3 cut(s) 561, 659, 1224
DpnI GATC 3 cut(s) 269, 794, 1019
DpnII GATC 3 cut(s) 267, 792, 1017
Eco130I CCWWGG 1 cut(s) 1036
Eco32I GATATC 1 cut(s) 746
EcoRII CCWGG 3 cut(s) 230, 275, 1067
EcoRV GATATC 1 cut(s) 746
EcoT14I CCWWGG 1 cut(s) 1036
ErhI CCWWGG 1 cut(s) 1036
Esp3I CGTCTC 1 cut(s) 787
FaqI GGGAC 2 cut(s) 322, 989
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 1 cut(s) 1017
Fnu4HI GCNGC 2 cut(s) 260, 368
FokI GGATG 5 cut(s) 143, 277, 369, 410, 705
Fsp4HI GCNGC 2 cut(s) 260, 368
GluI GCNGC 2 cut(s) 260, 368
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 3 cut(s) 395, 566, 575
HaeIII GGCC 4 cut(s) 259, 281, 302, 943
HapII CCGG 3 cut(s) 649, 964, 1182
HgaI GACGC 4 cut(s) 236, 461, 469, 641
Hin1I GRCGYC 1 cut(s) 652
HinfI GANTC 2 cut(s) 676, 1089
HpaII CCGG 3 cut(s) 649, 964, 1182
HphI GGTGA 5 cut(s) 46, 100, 181, 328, 434
Hpy166II GTNNAC 3 cut(s) 189, 241, 761
Hpy188I TCNGA 7 cut(s) 252, 272, 624, 681, 792, 833, 845
Hpy188III TCNNGA 6 cut(s) 374, 476, 554, 583, 1150, 1182
Hpy8I GTNNAC 3 cut(s) 189, 241, 761
Hpy99I CGWCG 4 cut(s) 252, 407, 463, 577
HpyAV CCTTC 2 cut(s) 310, 390
HpyCH4III ACNGT 2 cut(s) 620, 667
HpyCH4IV ACGT 2 cut(s) 588, 780
HpyF10VI GCNNNNNNNGC 7 cut(s) 287, 376, 469, 565, 940, 1010, 1103
HpyF3I CTNAG 3 cut(s) 561, 659, 1224
HpySE526I ACGT 2 cut(s) 588, 780
Hsp92I GRCGYC 1 cut(s) 652
Kpn2I TCCGGA 1 cut(s) 1181
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 1017
KspI CCGCGG 1 cut(s) 263
Kzo9I GATC 3 cut(s) 267, 792, 1017
LmnI GCTCC 3 cut(s) 137, 376, 556
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 555
MaeII ACGT 2 cut(s) 588, 780
MaeIII GTNAC 3 cut(s) 52, 341, 800
MalI GATC 3 cut(s) 269, 794, 1019
MboI GATC 3 cut(s) 267, 792, 1017
MboII GAAGA 2 cut(s) 753, 1177
MluCI AATT 5 cut(s) 18, 450, 465, 1145, 1177
MmeI TCCRAC 2 cut(s) 230, 602
MnlI CCTC 7 cut(s) 49, 52, 55, 381, 388, 538, 723
MreI CGCCGGCG 1 cut(s) 648
MroI TCCGGA 1 cut(s) 1181
MroNI GCCGGC 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 1031
MseI TTAA 2 cut(s) 17, 938
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 3 cut(s) 649, 964, 1182
MspR9I CCNGG 3 cut(s) 232, 277, 1069
MvaI CCWGG 3 cut(s) 232, 277, 1069
MvnI CGCG 2 cut(s) 247, 262
MwoI GCNNNNNNNGC 7 cut(s) 287, 376, 469, 565, 940, 1010, 1103
NaeI GCCGGC 1 cut(s) 650
NcoI CCATGG 1 cut(s) 1036
NdeII GATC 3 cut(s) 267, 792, 1017
NgoMIV GCCGGC 1 cut(s) 648
NlaIV GGNNCC 3 cut(s) 274, 378, 558
NmeAIII GCCGAG 2 cut(s) 126, 789
NmuCI GTSAC 2 cut(s) 52, 341
NspI RCATGY 3 cut(s) 448, 851, 982
PagI TCATGA 1 cut(s) 1149
PciI ACATGT 2 cut(s) 444, 978
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 1031
PfeI GAWTC 2 cut(s) 676, 1089
Pfl23II CGTACG 1 cut(s) 492
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 589
PkrI GCNGC 2 cut(s) 261, 369
PscI ACATGT 2 cut(s) 444, 978
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 230, 275, 1067
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 3 cut(s) 230, 275, 1067
PspLI CGTACG 1 cut(s) 492
PspN4I GGNNCC 3 cut(s) 274, 378, 558
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 2 cut(s) 740, 1201
PstNI CAGNNNCTG 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 6 cut(s) 27, 85, 494, 734, 760, 983
RsaNI GTAC 6 cut(s) 26, 84, 493, 733, 759, 982
RseI CAYNNNNRTG 1 cut(s) 220
SacII CCGCGG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 17, 938
SatI GCNGC 2 cut(s) 260, 368
Sau3AI GATC 3 cut(s) 267, 792, 1017
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 232, 277, 1069
SfaNI GCATC 1 cut(s) 555
SfcI CTRYAG 2 cut(s) 736, 1197
Sfr303I CCGCGG 1 cut(s) 263
SgrAI CRCCGGYG 1 cut(s) 648
SgrBI CCGCGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 5 cut(s) 18, 450, 465, 1145, 1177
SsiI CCGC 3 cut(s) 245, 260, 262
SspI AATATT 3 cut(s) 79, 685, 883
StyD4I CCNGG 3 cut(s) 230, 275, 1067
StyI CCWWGG 1 cut(s) 1036
TaaI ACNGT 2 cut(s) 620, 667
TaiI ACGT 2 cut(s) 591, 783
TaqI TCGA 1 cut(s) 393
TasI AATT 5 cut(s) 18, 450, 465, 1145, 1177
TatI WGTACW 2 cut(s) 83, 758
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 2 cut(s) 676, 1089
Tru1I TTAA 2 cut(s) 17, 938
Tru9I TTAA 2 cut(s) 17, 938
TscAI CASTG 3 cut(s) 64, 346, 1104
TseFI GTSAC 2 cut(s) 52, 341
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 52, 341
TspDTI ATGAA 6 cut(s) 116, 549, 886, 1138, 1166, 1178
TspRI CASTG 3 cut(s) 64, 346, 1104
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 589
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 1 cut(s) 1145
XceI RCATGY 3 cut(s) 448, 851, 982
XcmI CCANNNNNNNNNTGG 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.