Rroxscaffold_1G00039840

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015575
Physical Location & Seq
Reverse (-)
57522697 .. 57525340
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039840.1

Sequence Viewer

Length: 864 bp
ATGTACCGGTGTGCATTGATTCTCATACTGACCTTGTCCTCCTCCTCTCTCGCCACCTCTGGTCATAAGAGAACCAATATTTGTGCTCCCATCAACCCCATGAACATTACCAACTGCAAGAAACTACTCACTTTGGGAGCTGAACTCGGCTGGAACATCCACAACGAAACCCACATTGACATCTTGTTCACCATTCCAACATCTATGGACGACACACCAAAATGGGTCGCCTGGGGTGTGAACCCGAGTCGGAAAAGGCCGCGGATGATCGGAACCAGGGCCATTATCGCCGTTTCACAGGCCAACGGGACTTTGAAGGTCAGCAGATACAACATCACCAGTGACACCAAGCTGGGATGTCGTTTGCAGCCTTCCAAAGAGTTCGAGGATGTCGTCGTCCAAAACATGACAGGTGATGTGAAACCTAACGGATACATGTCAATTTTTGCGACGCTAATTTTGCGTCCAGATTTAGCTGCGTACGACATTGCAAGGTTGAACCATGTGTGGCAAGTTGGGTATGAAGCTGATGAGGTTGCTCTGGAGCCTAAGATGCACCCGACGGCTCTCCAGAACGTGGATAGCACAGAGACTACAAACTTGCACAGTTGGAAAGGTGCATGGGATTCTGAATATTGTGGGATGGGGAACATTGTTGCCCTTTGGAGTGATTATAGCGAGATGATGGCTCTGCGTTTAAGGCCAACGCCAACAGATGATTACCGGAAATACGGGACATTGCTTGGTTCCATCACATTGGGTTTGGAGATTTATACTTGGTGTAAATTCATGAAATCCATAATGAAGAAACCAAGCACTTCCGGAGAAGTTCAACCTGCTAGTAGTCGGTCTCATACCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

287

Amino Acids

32.05

Weight (kDa)

8.66

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 89 - 201 2.3e-19 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23200
malus_domestica MD03G1196700.v1.1 MD11G1212800.v1.1
prunus_persica Prupe.4G218700_v2.0.a1
pyrus_communis pycom11g18780
rosa_laevigata RLG00000034009
rosa_multiflora Rmu_sc0004953.1_g000005 Rmu_sc0004953.1_g000008
rosa_roxburghii Rroxscaffold_1G00039840
rosa_rugosa Rorug05G0188200 Rorug05G0220100
rosa_samantha Rh5AG273700 Rh5BG278800 Rh5CG310800 Rh5DG287000
rosa_wichuraiana Rw5G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 844
AccB7I CCANNNNNTGG 1 cut(s) 577
AccII CGCG 1 cut(s) 262
AccIII TCCGGA 1 cut(s) 821
AciI CCGC 2 cut(s) 260, 262
AcsI RAATTY 1 cut(s) 785
AfaI GTAC 2 cut(s) 5, 482
AfiI CCNNNNNNNGG 1 cut(s) 577
AflIII ACRYGT 1 cut(s) 435
AgeI ACCGGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 316, 499, 833
AjnI CCWGG 2 cut(s) 230, 275
AluBI AGCT 4 cut(s) 140, 352, 476, 527
AluI AGCT 4 cut(s) 140, 352, 476, 527
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 584, 855
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 821
AoxI GGCC 4 cut(s) 257, 279, 300, 701
ApeKI GCWGC 2 cut(s) 367, 476
ApoI RAATTY 1 cut(s) 785
ArsI GACNNNNNNTTYG 2 cut(s) 442, 474
AsiGI ACCGGT 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 3 cut(s) 181, 328, 425
AvaI CYCGRG 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 379, 463
BccI CCATC 4 cut(s) 98, 637, 679, 758
BceAI ACGGC 2 cut(s) 275, 579
BciT130I CCWGG 2 cut(s) 232, 277
BciVI GTATCC 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 584, 855
BfaI CTAG 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 844
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 3 cut(s) 260, 368, 477
BlsI GCNGC 3 cut(s) 261, 369, 478
Bme1390I CCNGG 2 cut(s) 232, 277
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 274, 546, 748
BmrFI CCNGG 2 cut(s) 232, 277
BmsI GCATC 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 2 cut(s) 554, 563
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 3 cut(s) 231, 260, 276
BsaWI WCCGGW 3 cut(s) 6, 723, 821
Bsc4I CCNNNNNNNGG 1 cut(s) 577
Bse118I RCCGGY 1 cut(s) 6
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 2 cut(s) 486, 737
BseAI TCCGGA 1 cut(s) 821
BseBI CCWGG 2 cut(s) 232, 277
BseDI CCNNGG 3 cut(s) 231, 260, 276
BseGI GGATG 5 cut(s) 156, 270, 362, 394, 648
BseLI CCNNNNNNNGG 1 cut(s) 577
BseMI GCAATG 2 cut(s) 486, 737
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 2 cut(s) 379, 463
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 262
BshFI GGCC 4 cut(s) 259, 281, 302, 703
BshTI ACCGGT 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 3 cut(s) 7, 724, 822
BsiWI CGTACG 1 cut(s) 480
BslFI GGGAC 2 cut(s) 322, 748
BslI CCNNNNNNNGG 1 cut(s) 577
BsmAI GTCTC 2 cut(s) 584, 855
BsmFI GGGAC 2 cut(s) 322, 748
BsnI GGCC 4 cut(s) 259, 281, 302, 703
Bso31I GGTCTC 1 cut(s) 855
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 821
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 260, 262
BspANI GGCC 4 cut(s) 259, 281, 302, 703
BspEI TCCGGA 1 cut(s) 821
BspFNI CGCG 1 cut(s) 262
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 3 cut(s) 274, 546, 748
BspMI ACCTGC 1 cut(s) 844
BspTNI GGTCTC 1 cut(s) 855
BsrDI GCAATG 2 cut(s) 486, 737
BsrFI RCCGGY 1 cut(s) 6
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 6
BssECI CCNNGG 3 cut(s) 231, 260, 276
BssMI GATC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 232, 277
Bst4CI ACNGT 1 cut(s) 608
BstDEI CTNAG 2 cut(s) 549, 861
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 5 cut(s) 156, 270, 362, 394, 648
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 2 cut(s) 584, 855
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 4 cut(s) 287, 460, 553, 700
BstNI CCWGG 2 cut(s) 232, 277
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 230, 275
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 379, 463
BstXI CCANNNNNNTGG 1 cut(s) 757
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 4 cut(s) 259, 281, 302, 703
BtgI CCRYGG 1 cut(s) 260
BtsCI GGATG 5 cut(s) 156, 270, 362, 394, 648
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 844
CciI TCATGA 1 cut(s) 789
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 279
Cfr42I CCGCGG 1 cut(s) 263
CseI GACGC 2 cut(s) 452, 460
Csp6I GTAC 2 cut(s) 4, 481
CspAI ACCGGT 1 cut(s) 6
CviAII CATG 6 cut(s) 100, 406, 436, 503, 621, 790
CviQI GTAC 2 cut(s) 4, 481
DdeI CTNAG 2 cut(s) 549, 861
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 855
Eco88I CYCGRG 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 230, 275
FaeI CATG 6 cut(s) 103, 409, 439, 506, 624, 793
FaqI GGGAC 2 cut(s) 322, 748
FatI CATG 6 cut(s) 99, 405, 435, 502, 620, 789
Fnu4HI GCNGC 3 cut(s) 260, 368, 477
FokI GGATG 5 cut(s) 143, 277, 369, 401, 655
Fsp4HI GCNGC 3 cut(s) 260, 368, 477
FspBI CTAG 1 cut(s) 840
GluI GCNGC 3 cut(s) 260, 368, 477
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 2 cut(s) 554, 563
HaeIII GGCC 4 cut(s) 259, 281, 302, 703
HapII CCGG 3 cut(s) 7, 724, 822
HgaI GACGC 2 cut(s) 452, 460
Hin1II CATG 6 cut(s) 103, 409, 439, 506, 624, 793
HinfI GANTC 3 cut(s) 19, 247, 626
HpaII CCGG 3 cut(s) 7, 724, 822
HphI GGTGA 3 cut(s) 181, 328, 425
Hpy166II GTNNAC 2 cut(s) 189, 241
Hpy188I TCNGA 3 cut(s) 252, 272, 631
Hpy188III TCNNGA 5 cut(s) 467, 542, 571, 790, 822
Hpy8I GTNNAC 2 cut(s) 189, 241
Hpy99I CGWCG 3 cut(s) 398, 454, 565
HpyAV CCTTC 2 cut(s) 310, 381
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 7 cut(s) 14, 117, 367, 491, 556, 604, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 460, 553, 700
HpyF3I CTNAG 2 cut(s) 549, 861
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 6 cut(s) 103, 409, 439, 506, 624, 793
Kpn2I TCCGGA 1 cut(s) 821
KspI CCGCGG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 91, 137, 544
Lsp1109I GCAGC 2 cut(s) 379, 463
LweI GCATC 1 cut(s) 543
MaeI CTAG 1 cut(s) 840
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 1 cut(s) 341
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 1 cut(s) 817
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 3 cut(s) 441, 456, 785
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 3 cut(s) 221, 230, 590
MnlI CCTC 6 cut(s) 49, 52, 55, 67, 379, 526
MroI TCCGGA 1 cut(s) 821
MseI TTAA 1 cut(s) 698
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 3 cut(s) 7, 724, 822
MspR9I CCNGG 2 cut(s) 232, 277
MvaI CCWGG 2 cut(s) 232, 277
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 4 cut(s) 287, 460, 553, 700
NdeII GATC 1 cut(s) 267
NlaIII CATG 6 cut(s) 103, 409, 439, 506, 624, 793
NlaIV GGNNCC 3 cut(s) 274, 546, 748
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 439
PagI TCATGA 1 cut(s) 789
PciI ACATGT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PfeI GAWTC 2 cut(s) 19, 626
Pfl23II CGTACG 1 cut(s) 480
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 577
PinAI ACCGGT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 261, 369, 478
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PscI ACATGT 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 230, 275
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 2 cut(s) 230, 275
PspLI CGTACG 1 cut(s) 480
PspN4I GGNNCC 3 cut(s) 274, 546, 748
PspPI GGNCC 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 2 cut(s) 5, 482
RsaNI GTAC 2 cut(s) 4, 481
RseI CAYNNNNRTG 1 cut(s) 220
SacII CCGCGG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 3 cut(s) 260, 368, 477
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 232, 277
SduI GDGCHC 1 cut(s) 88
SfaNI GCATC 1 cut(s) 543
Sfr303I CCGCGG 1 cut(s) 263
SgrBI CCGCGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 3 cut(s) 441, 456, 785
SsiI CCGC 2 cut(s) 260, 262
SspI AATATT 2 cut(s) 79, 635
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 2 cut(s) 230, 275
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 1 cut(s) 579
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 837
TasI AATT 3 cut(s) 441, 456, 785
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 2 cut(s) 19, 626
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 367, 476
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 5 cut(s) 116, 537, 778, 806, 818
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 1 cut(s) 346
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 577
XapI RAATTY 1 cut(s) 785
XceI RCATGY 1 cut(s) 439
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.