Rh5BG278800

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015575
Physical Location & Seq
Forward (+)
35184298 .. 35186614
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG278800.1

Sequence Viewer

Length: 933 bp
ATGTGCTGGTGTGCATTAATTCTCGTACTGACCTTGTCCTCCTCCTCTCTCGTCACCACTGCTCATAAGAAAGCCAATATTTGTACTCCCATCAACCCCATGAACATCACCAACTGCAAGAAACTACTCACTTTGGGAGCTGAACTCGGCTGGAACATCCACAACGAAACCCACATTGACATCTTGTTCACCATTCCAATATCTATGGACGACACACCAAAATGGGTCGCCTGGGGTGTGAACCCGCGTCGGAAAAGGCCGCGGATGATCGGAACCAGGGCCATTATCGCCGTTTCACAGGCCAACGGGACTTTGAAGGTCAGCAGATACAACATCACCAGTGACACCAAGCTGGGATGTCGTTTGCAGCCTCTGGAGCCTTCCAAAGAGTTCGAGGATGTCGTCGTCCAAAACATGACAGGTGATGTGAAACCTAACAGATACATGTCAATTTTTGCGACGCTGATTTTGCGTCCAGATTTAGCTCATGCGTACGACATTGCAAGGTTGAACCATGTGTGGCAAGTTGGGTATGAAGCTGATGAGGTTGCTCTGGAGCCTAAGATGCACCCGACGGCTCTCCAGAACGTGGATAGCACAGAGACTACAAACTTGTACAGTCGGAAAGGTATCAGCATTGGACATCGCCGGCGTCATCTTAGAACGGTGCATGGGATTCTGAATATTGTGGGATGGGGAACATTGTTGCCCTTTGGAGTGATTATAGCGAGGTACTGCAGAAGATATCCCTTTCAATGTACACATTGGTTTTTATCGCACGTCTCTTGTCAGATCGTTGGTTACATTCTCGGCACGATTGGTTGGGCAATCGGAATATGGCTCGGACATGCTTCCAAAGAATATCACTTCCACACTCACAATATTCTCGCCATGTTCATATTTGCATTTACAACATTACAAGTAATTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

310

Amino Acids

35.13

Weight (kDa)

9.39

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 89 - 205 3.5e-18 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23200
malus_domestica MD03G1196700.v1.1 MD11G1212800.v1.1
prunus_persica Prupe.4G218700_v2.0.a1
pyrus_communis pycom11g18780
rosa_laevigata RLG00000034009
rosa_multiflora Rmu_sc0004953.1_g000005 Rmu_sc0004953.1_g000008
rosa_roxburghii Rroxscaffold_1G00039840
rosa_rugosa Rorug05G0188200 Rorug05G0220100
rosa_samantha Rh5AG273700 Rh5BG278800 Rh5CG310800 Rh5DG287000
rosa_wichuraiana Rw5G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 589
AccII CGCG 2 cut(s) 247, 262
AciI CCGC 3 cut(s) 245, 260, 262
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 6 cut(s) 27, 85, 494, 617, 734, 760
AfiI CCNNNNNNNGG 1 cut(s) 589
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 3 cut(s) 316, 511, 755
AjiI CACGTC 1 cut(s) 781
AjnI CCWGG 2 cut(s) 230, 275
AluBI AGCT 4 cut(s) 140, 352, 485, 539
AluI AGCT 4 cut(s) 140, 352, 485, 539
Alw26I GTCTC 2 cut(s) 596, 787
AlwNI CAGNNNCTG 1 cut(s) 373
AoxI GGCC 3 cut(s) 257, 279, 300
ApeKI GCWGC 1 cut(s) 367
ArsI GACNNNNNNTTYG 2 cut(s) 451, 483
AseI ATTAAT 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 5 cut(s) 46, 100, 181, 328, 434
BbvI GCAGC 1 cut(s) 379
BccI CCATC 2 cut(s) 98, 687
BceAI ACGGC 2 cut(s) 275, 591
BciT130I CCWGG 2 cut(s) 232, 277
BcoDI GTCTC 2 cut(s) 596, 787
BfmI CTRYAG 1 cut(s) 736
BisI GCNGC 2 cut(s) 260, 368
BlsI GCNGC 2 cut(s) 261, 369
Bme1390I CCNGG 2 cut(s) 232, 277
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 3 cut(s) 274, 378, 558
BmrFI CCNGG 2 cut(s) 232, 277
BmsI GCATC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 3 cut(s) 395, 566, 575
BsaHI GRCGYC 1 cut(s) 652
BsaJI CCNNGG 3 cut(s) 231, 260, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 589
Bse118I RCCGGY 1 cut(s) 648
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 2 cut(s) 232, 277
BseDI CCNNGG 3 cut(s) 231, 260, 276
BseGI GGATG 5 cut(s) 156, 270, 362, 403, 698
BseLI CCNNNNNNNGG 1 cut(s) 589
BseMI GCAATG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 2 cut(s) 247, 262
BshFI GGCC 3 cut(s) 259, 281, 302
BsiSI CCGG 1 cut(s) 649
BsiWI CGTACG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 589
BsmAI GTCTC 2 cut(s) 596, 787
BsmBI CGTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 3 cut(s) 259, 281, 302
Bsp1407I TGTACA 2 cut(s) 615, 758
Bsp143I GATC 2 cut(s) 267, 792
BspACI CCGC 3 cut(s) 245, 260, 262
BspANI GGCC 3 cut(s) 259, 281, 302
BspFNI CGCG 2 cut(s) 247, 262
BspLI GGNNCC 3 cut(s) 274, 378, 558
BspMAI CTGCAG 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 648
BsrGI TGTACA 2 cut(s) 615, 758
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 648
BssECI CCNNGG 3 cut(s) 231, 260, 276
BssMI GATC 2 cut(s) 267, 792
BssNI GRCGYC 1 cut(s) 652
Bst2UI CCWGG 2 cut(s) 232, 277
Bst4CI ACNGT 2 cut(s) 620, 667
BstACI GRCGYC 1 cut(s) 652
BstAUI TGTACA 2 cut(s) 615, 758
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 2 cut(s) 561, 659
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 5 cut(s) 156, 270, 362, 403, 698
BstFNI CGCG 2 cut(s) 247, 262
BstKTI GATC 2 cut(s) 270, 795
BstMAI GTCTC 2 cut(s) 596, 787
BstMBI GATC 2 cut(s) 267, 792
BstMWI GCNNNNNNNGC 4 cut(s) 287, 376, 469, 565
BstNI CCWGG 2 cut(s) 232, 277
BstNSI RCATGY 2 cut(s) 448, 851
BstSCI CCNGG 2 cut(s) 230, 275
BstSFI CTRYAG 1 cut(s) 736
BstUI CGCG 2 cut(s) 247, 262
BstV1I GCAGC 1 cut(s) 379
BsuRI GGCC 3 cut(s) 259, 281, 302
BtgI CCRYGG 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 629
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 5 cut(s) 156, 270, 362, 403, 698
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 3 cut(s) 57, 346, 928
Cac8I GCNNGC 1 cut(s) 650
CaiI CAGNNNCTG 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 648
Cfr13I GGNCC 1 cut(s) 279
Cfr42I CCGCGG 1 cut(s) 263
CseI GACGC 4 cut(s) 236, 461, 469, 641
Csp6I GTAC 6 cut(s) 26, 84, 493, 616, 733, 759
CviAII CATG 8 cut(s) 100, 415, 445, 488, 515, 671, 848, 892
CviQI GTAC 6 cut(s) 26, 84, 493, 616, 733, 759
DdeI CTNAG 2 cut(s) 561, 659
DpnI GATC 2 cut(s) 269, 794
DpnII GATC 2 cut(s) 267, 792
Eco32I GATATC 1 cut(s) 746
EcoRII CCWGG 2 cut(s) 230, 275
EcoRV GATATC 1 cut(s) 746
Esp3I CGTCTC 1 cut(s) 787
FaeI CATG 8 cut(s) 103, 418, 448, 491, 518, 674, 851, 895
FaqI GGGAC 1 cut(s) 322
FatI CATG 8 cut(s) 99, 414, 444, 487, 514, 670, 847, 891
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 260, 368
FokI GGATG 5 cut(s) 143, 277, 369, 410, 705
Fsp4HI GCNGC 2 cut(s) 260, 368
GluI GCNGC 2 cut(s) 260, 368
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 3 cut(s) 395, 566, 575
HaeIII GGCC 3 cut(s) 259, 281, 302
HapII CCGG 1 cut(s) 649
HgaI GACGC 4 cut(s) 236, 461, 469, 641
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 8 cut(s) 103, 418, 448, 491, 518, 674, 851, 895
HinfI GANTC 1 cut(s) 676
HpaII CCGG 1 cut(s) 649
HphI GGTGA 5 cut(s) 46, 100, 181, 328, 434
Hpy166II GTNNAC 3 cut(s) 189, 241, 761
Hpy188I TCNGA 7 cut(s) 252, 272, 624, 681, 792, 833, 845
Hpy188III TCNNGA 4 cut(s) 374, 476, 554, 583
Hpy8I GTNNAC 3 cut(s) 189, 241, 761
Hpy99I CGWCG 4 cut(s) 252, 407, 463, 577
HpyAV CCTTC 2 cut(s) 310, 390
HpyCH4III ACNGT 2 cut(s) 620, 667
HpyCH4IV ACGT 2 cut(s) 588, 780
HpyCH4V TGCA 8 cut(s) 14, 117, 367, 503, 568, 670, 738, 905
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 376, 469, 565
HpyF3I CTNAG 2 cut(s) 561, 659
HpySE526I ACGT 2 cut(s) 588, 780
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 8 cut(s) 103, 418, 448, 491, 518, 674, 851, 895
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
KspI CCGCGG 1 cut(s) 263
Kzo9I GATC 2 cut(s) 267, 792
LmnI GCTCC 3 cut(s) 137, 376, 556
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 555
MaeII ACGT 2 cut(s) 588, 780
MaeIII GTNAC 3 cut(s) 52, 341, 800
MalI GATC 2 cut(s) 269, 794
MboI GATC 2 cut(s) 267, 792
MboII GAAGA 1 cut(s) 753
MluCI AATT 3 cut(s) 18, 450, 924
MmeI TCCRAC 2 cut(s) 230, 602
MnlI CCTC 7 cut(s) 49, 52, 55, 381, 388, 538, 723
MreI CGCCGGCG 1 cut(s) 648
MroNI GCCGGC 1 cut(s) 648
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 649
MspR9I CCNGG 2 cut(s) 232, 277
MvaI CCWGG 2 cut(s) 232, 277
MvnI CGCG 2 cut(s) 247, 262
MwoI GCNNNNNNNGC 4 cut(s) 287, 376, 469, 565
NaeI GCCGGC 1 cut(s) 650
NdeII GATC 2 cut(s) 267, 792
NgoMIV GCCGGC 1 cut(s) 648
NlaIII CATG 8 cut(s) 103, 418, 448, 491, 518, 674, 851, 895
NlaIV GGNNCC 3 cut(s) 274, 378, 558
NmeAIII GCCGAG 2 cut(s) 126, 789
NmuCI GTSAC 2 cut(s) 52, 341
NspI RCATGY 2 cut(s) 448, 851
PciI ACATGT 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 676
Pfl23II CGTACG 1 cut(s) 492
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 589
PkrI GCNGC 2 cut(s) 261, 369
PscI ACATGT 1 cut(s) 444
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 230, 275
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 2 cut(s) 230, 275
PspLI CGTACG 1 cut(s) 492
PspN4I GGNNCC 3 cut(s) 274, 378, 558
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 740
PstNI CAGNNNCTG 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 6 cut(s) 27, 85, 494, 617, 734, 760
RsaNI GTAC 6 cut(s) 26, 84, 493, 616, 733, 759
RseI CAYNNNNRTG 1 cut(s) 220
SacII CCGCGG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 2 cut(s) 260, 368
Sau3AI GATC 2 cut(s) 267, 792
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 232, 277
SfaNI GCATC 1 cut(s) 555
SfcI CTRYAG 1 cut(s) 736
Sfr303I CCGCGG 1 cut(s) 263
SgrAI CRCCGGYG 1 cut(s) 648
SgrBI CCGCGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 3 cut(s) 18, 450, 924
SsiI CCGC 3 cut(s) 245, 260, 262
SspI AATATT 3 cut(s) 79, 685, 883
StyD4I CCNGG 2 cut(s) 230, 275
TaaI ACNGT 2 cut(s) 620, 667
TaiI ACGT 2 cut(s) 591, 783
TaqI TCGA 1 cut(s) 393
TasI AATT 3 cut(s) 18, 450, 924
TatI WGTACW 3 cut(s) 83, 615, 758
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 2 cut(s) 64, 346
TseFI GTSAC 2 cut(s) 52, 341
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 52, 341
TspDTI ATGAA 3 cut(s) 116, 549, 886
TspRI CASTG 2 cut(s) 64, 346
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 589
VspI ATTAAT 1 cut(s) 17
XceI RCATGY 2 cut(s) 448, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.