pycom11g18780

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015575
Physical Location & Seq
Reverse (-)
20949320 .. 20951616
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
ATGGCCACTACCAAATCTGTAATTCTTATCATATTAACAGTTTCCTCCTCACTTCTTTTCCCAATTTCTGAGCAATTTTCCAATTGTAGCCCCATCAATCCCATGAACATTACAAACTGCAAGAAACTAATCACTCTAGGAGCAGAATTCGGGTGGAACATTCACAGTAACACCGAAATTGACATCTTGCTCACCATTAGAATGCCTATTAAATGGATAGCCTGGGGTGTAAACCCAGGTCCCCAAAGACCGCAGATGGTCGGGACCAGGGCTATTATAGGCATTCAACAGCCCAATGCAACGTTGGCAGTTAGAAAATACAACATCACCAGTGACACCAAGCTGGGCTGTAGGCTTCAGCCTTCACAAGATTTTGATGATGTTGTCGTCAAGAACATGAGAGGTGAAGTAAACCCTGGGTACATGTCGATATCCGCAACGTTAATTTTGCCCCGGGCTCCTGCTGTCTACGATATTTCGAAGCTGAATCATGTTTGGCAAGTAGGGTTTGAGGCTGATGATGTTCTTATGGAGCCTAAGATGCATTCCACTTTTCTCCAGAATGTGGATAGCACAGAGAGCATAAACATGACCAGCGGACACGGTCTTAGCGTAGGACATCGCCGGCATCACCTCAGAACGGTACATGGCATTCTTAATATTGTGGGGTGGGGAACAATGTTGCCATTGGGAGTGATCATAGCAAGGTACTTCAGAAAATGCCCTATTCCCTGTGAAAAGTGGTATATGGTTCATGTCTCCTGCCAGATTGTTGGTTACATTCTTGGCACGGCTGGTTGGGCGATCGGACTCTGGCTCGGCCATGCTTCCAGACACTACAGCTTCTCCACTCATCGAATTCTCGCCATTTGCATATTTGCCTTCACCACATTACAAATGCTTGCCCTGCGTTTAAGGCCATCGGCAACTGATGACTACCGGAAATATTGGGACATGTACCATCATTTTCTAGGGTATGCACTGCTGGCTGTGATCTCAGTGAACATATTCCATGGCATTGCGATTTTGAAGCCGAATAAAACCTGGCTGTGGGTTTACATCGGAGTCCTTGGAATGTTTGCTTTGGTTGCGATTGGTTTGGAGATTTTTACTTGGAGTAAGTTCCTGCATGCAAAGTCTAAAGGGGAACAACAATATGCAGGGCAAACAGGTCAATCTGGTTCAGGACCTCAAGGCTCCTCGGGCACAGAACCAGGTACAGACCCATTACCGGGATCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

415

Amino Acids

46.0

Weight (kDa)

9.25

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 86 - 197 9.4e-17 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23200
malus_domestica MD03G1196700.v1.1 MD11G1212800.v1.1
prunus_persica Prupe.4G218700_v2.0.a1
pyrus_communis pycom11g18780
rosa_laevigata RLG00000034009
rosa_multiflora Rmu_sc0004953.1_g000005 Rmu_sc0004953.1_g000008
rosa_roxburghii Rroxscaffold_1G00039840
rosa_rugosa Rorug05G0188200 Rorug05G0220100
rosa_samantha Rh5AG273700 Rh5BG278800 Rh5CG310800 Rh5DG287000
rosa_wichuraiana Rw5G025730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 468
AciI CCGC 3 cut(s) 251, 435, 597
AclI AACGTT 2 cut(s) 302, 440
AclWI GGATC 2 cut(s) 1230, 1243
AcoI YGGCCR 2 cut(s) 3, 820
AcsI RAATTY 2 cut(s) 146, 858
AcuI CTGAAG 2 cut(s) 341, 697
AfaI GTAC 5 cut(s) 422, 645, 710, 959, 1219
AfiI CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
AflIII ACRYGT 2 cut(s) 423, 954
AgsI TTSAA 2 cut(s) 287, 1030
AjnI CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
AluBI AGCT 3 cut(s) 343, 484, 843
AluI AGCT 3 cut(s) 343, 484, 843
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 2 cut(s) 1230, 1243
Ama87I CYCGRG 2 cut(s) 453, 1201
AoxI GGCC 3 cut(s) 3, 820, 917
ApoI RAATTY 2 cut(s) 146, 858
Asp700I GAANNNNTTC 1 cut(s) 1007
AspS9I GGNCC 3 cut(s) 239, 264, 1187
AsuC2I CCSGG 3 cut(s) 454, 455, 1233
AsuHPI GGTGA 5 cut(s) 184, 319, 416, 623, 877
AsuII TTCGAA 1 cut(s) 479
AvaI CYCGRG 2 cut(s) 453, 1201
AvaII GGWCC 3 cut(s) 239, 264, 1187
BaeGI GKGCMC 1 cut(s) 1208
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1235
BanII GRGCYC 1 cut(s) 460
BccI CCATC 4 cut(s) 101, 250, 928, 969
BceAI ACGGC 1 cut(s) 807
BciT130I CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
BclI TGATCA 1 cut(s) 696
BcnI CCSGG 3 cut(s) 454, 455, 1233
BcoDI GTCTC 1 cut(s) 763
BfaI CTAG 2 cut(s) 137, 971
BfmI CTRYAG 2 cut(s) 349, 838
Bme1390I CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
Bme18I GGWCC 3 cut(s) 239, 264, 1187
BmeT110I CYCGRG 2 cut(s) 453, 1201
BmgT120I GGNCC 3 cut(s) 239, 264, 1187
BmiI GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
BmrFI CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
BmsI GCATC 2 cut(s) 531, 637
BpmI CTGGAG 1 cut(s) 542
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 1176
BpuMI CCSGG 3 cut(s) 454, 455, 1233
BsaWI WCCGGW 1 cut(s) 939
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
Bse118I RCCGGY 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 1017
BseBI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
BseLI CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
BseMI GCAATG 1 cut(s) 1017
BseMII CTCAG 3 cut(s) 60, 649, 1011
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 2 cut(s) 37, 1189
BseSI GKGCMC 1 cut(s) 1208
BseYI CCCAGC 1 cut(s) 343
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 3 cut(s) 5, 822, 919
BsiEI CGRYCG 1 cut(s) 807
BsiHKCI CYCGRG 2 cut(s) 453, 1201
BsiSI CCGG 4 cut(s) 454, 625, 940, 1232
BslFI GGGAC 3 cut(s) 225, 277, 965
BslI CCNNNNNNNGG 5 cut(s) 565, 640, 1050, 1231, 1232
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 3 cut(s) 225, 277, 965
BsmI GAATGC 4 cut(s) 207, 282, 544, 651
BsnI GGCC 3 cut(s) 5, 822, 919
BsoBI CYCGRG 2 cut(s) 453, 1201
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 460, 1208
Bsp143I GATC 4 cut(s) 696, 804, 993, 1235
Bsp19I CCATGG 1 cut(s) 1012
BspACI CCGC 3 cut(s) 251, 435, 597
BspANI GGCC 3 cut(s) 5, 822, 919
BspCNI CTCAG 3 cut(s) 61, 648, 1010
BspLI GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
BspPI GGATC 2 cut(s) 1230, 1243
BspT104I TTCGAA 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 1017
BsrFI RCCGGY 1 cut(s) 624
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 624
BssMI GATC 4 cut(s) 696, 804, 993, 1235
BssT1I CCWWGG 2 cut(s) 1012, 1069
Bst2UI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
Bst4CI ACNGT 4 cut(s) 40, 167, 605, 643
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 626, 903, 987, 1131
BstDEI CTNAG 5 cut(s) 69, 537, 608, 635, 997
BstDSI CCRYGG 1 cut(s) 1012
BstKTI GATC 4 cut(s) 699, 807, 996, 1238
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 4 cut(s) 696, 804, 993, 1235
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 9 cut(s) 305, 541, 579, 800, 907, 916, 986, 1088, 1203
BstNI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
BstNSI RCATGY 3 cut(s) 427, 958, 1133
BstSCI CCNGG 9 cut(s) 221, 235, 266, 415, 452, 453, 1043, 1213, 1231
BstSFI CTRYAG 2 cut(s) 349, 838
BstSLI GKGCMC 1 cut(s) 1208
BstX2I RGATCY 1 cut(s) 1235
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 1 cut(s) 1235
BsuRI GGCC 3 cut(s) 5, 822, 919
BtgI CCRYGG 1 cut(s) 1012
BtgZI GCGATG 1 cut(s) 605
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 3 cut(s) 337, 980, 1005
Cac8I GCNNGC 4 cut(s) 626, 903, 987, 1131
Cfr10I RCCGGY 1 cut(s) 624
Cfr13I GGNCC 3 cut(s) 239, 264, 1187
Cfr9I CCCGGG 1 cut(s) 453
CsiI ACCWGGT 1 cut(s) 1213
Csp6I GTAC 5 cut(s) 421, 644, 709, 958, 1218
CviQI GTAC 5 cut(s) 421, 644, 709, 958, 1218
DdeI CTNAG 5 cut(s) 69, 537, 608, 635, 997
DpnI GATC 4 cut(s) 698, 806, 995, 1237
DpnII GATC 4 cut(s) 696, 804, 993, 1235
EaeI YGGCCR 2 cut(s) 3, 820
Eco130I CCWWGG 2 cut(s) 1012, 1069
Eco24I GRGCYC 1 cut(s) 460
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 3 cut(s) 239, 264, 1187
Eco57I CTGAAG 2 cut(s) 341, 697
Eco88I CYCGRG 2 cut(s) 453, 1201
EcoO109I RGGNCCY 2 cut(s) 239, 1187
EcoRI GAATTC 2 cut(s) 146, 858
EcoRII CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 1012, 1069
EcoT22I ATGCAT 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 1012, 1069
FaqI GGGAC 3 cut(s) 225, 277, 965
FbaI TGATCA 1 cut(s) 696
FblI GTMKAC 1 cut(s) 468
FriOI GRGCYC 1 cut(s) 460
FspBI CTAG 2 cut(s) 137, 971
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 3 cut(s) 5, 822, 919
HapII CCGG 4 cut(s) 454, 625, 940, 1232
HinfI GANTC 3 cut(s) 487, 810, 1065
HpaII CCGG 4 cut(s) 454, 625, 940, 1232
HphI GGTGA 5 cut(s) 184, 319, 416, 623, 877
Hpy166II GTNNAC 5 cut(s) 232, 412, 469, 1003, 1057
Hpy188I TCNGA 5 cut(s) 70, 638, 716, 809, 1064
Hpy188III TCNNGA 5 cut(s) 262, 391, 559, 831, 1185
Hpy8I GTNNAC 5 cut(s) 232, 412, 469, 1003, 1057
HpyAV CCTTC 2 cut(s) 372, 892
HpyCH4III ACNGT 4 cut(s) 40, 167, 605, 643
HpyCH4IV ACGT 2 cut(s) 302, 440
HpyCH4V TGCA 8 cut(s) 120, 299, 544, 873, 980, 1129, 1133, 1160
HpyF10VI GCNNNNNNNGC 9 cut(s) 305, 541, 579, 800, 907, 916, 986, 1088, 1203
HpyF3I CTNAG 5 cut(s) 69, 537, 608, 635, 997
HpySE526I ACGT 2 cut(s) 302, 440
KroI GCCGGC 1 cut(s) 624
KroNI GCCGGC 1 cut(s) 626
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 4 cut(s) 696, 804, 993, 1235
LmnI GCTCC 4 cut(s) 140, 463, 532, 1202
LweI GCATC 2 cut(s) 531, 637
MabI ACCWGGT 1 cut(s) 1213
MaeI CTAG 2 cut(s) 137, 971
MaeII ACGT 2 cut(s) 302, 440
MaeIII GTNAC 3 cut(s) 167, 332, 776
MalI GATC 4 cut(s) 698, 806, 995, 1237
MboI GATC 4 cut(s) 696, 804, 993, 1235
MfeI CAATTG 1 cut(s) 82
MflI RGATCY 1 cut(s) 1235
MhlI GDGCHC 2 cut(s) 460, 1208
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 21, 63, 74, 82, 146, 177, 444, 858
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 804, 1074
MnlI CCTC 7 cut(s) 55, 58, 395, 505, 644, 1200, 1210
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 546
MroNI GCCGGC 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 1007
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 35, 210, 443, 657, 914
MslI CAYNNNNRTG 2 cut(s) 200, 587
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 597
MspI CCGG 4 cut(s) 454, 625, 940, 1232
MspR9I CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
MunI CAATTG 1 cut(s) 82
Mva1269I GAATGC 4 cut(s) 207, 282, 544, 651
MvaI CCWGG 6 cut(s) 223, 237, 268, 417, 1045, 1215
MwoI GCNNNNNNNGC 9 cut(s) 305, 541, 579, 800, 907, 916, 986, 1088, 1203
NaeI GCCGGC 1 cut(s) 626
NciI CCSGG 3 cut(s) 454, 455, 1233
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 4 cut(s) 696, 804, 993, 1235
NgoMIV GCCGGC 1 cut(s) 624
NlaIV GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
NmeAIII GCCGAG 1 cut(s) 798
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 546
NspI RCATGY 3 cut(s) 427, 958, 1133
NspV TTCGAA 1 cut(s) 479
PaeI GCATGC 1 cut(s) 1133
PasI CCCWGGG 1 cut(s) 416
PciI ACATGT 2 cut(s) 423, 954
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 4 cut(s) 207, 282, 544, 651
PdiI GCCGGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 1 cut(s) 487
PflFI GACNNNGTC 1 cut(s) 603
PflMI CCANNNNNTGG 1 cut(s) 565
Ple19I CGATCG 1 cut(s) 807
PleI GAGTC 2 cut(s) 804, 1073
PpsI GAGTC 2 cut(s) 804, 1073
PpuMI RGGWCCY 2 cut(s) 239, 1187
PscI ACATGT 2 cut(s) 423, 954
Psp1406I AACGTT 2 cut(s) 302, 440
Psp5II RGGWCCY 2 cut(s) 239, 1187
Psp6I CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 6 cut(s) 221, 235, 266, 415, 1043, 1213
PspN4I GGNNCC 6 cut(s) 241, 265, 459, 534, 1198, 1237
PspPI GGNCC 3 cut(s) 239, 264, 1187
PspPPI RGGWCCY 2 cut(s) 239, 1187
PsuI RGATCY 1 cut(s) 1235
PsyI GACNNNGTC 1 cut(s) 603
PvuI CGATCG 1 cut(s) 807
RsaI GTAC 5 cut(s) 422, 645, 710, 959, 1219
RsaNI GTAC 5 cut(s) 421, 644, 709, 958, 1218
RseI CAYNNNNRTG 2 cut(s) 200, 587
SaqAI TTAA 5 cut(s) 35, 210, 443, 657, 914
Sau3AI GATC 4 cut(s) 696, 804, 993, 1235
Sau96I GGNCC 3 cut(s) 239, 264, 1187
SchI GAGTC 2 cut(s) 804, 1074
ScrFI CCNGG 9 cut(s) 223, 237, 268, 417, 454, 455, 1045, 1215, 1233
SduI GDGCHC 2 cut(s) 460, 1208
SexAI ACCWGGT 1 cut(s) 1213
SfaNI GCATC 2 cut(s) 531, 637
SfcI CTRYAG 2 cut(s) 349, 838
SfuI TTCGAA 1 cut(s) 479
SinI GGWCC 3 cut(s) 239, 264, 1187
SmaI CCCGGG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 200, 587
SmlI CTYRAG 1 cut(s) 1191
SmoI CTYRAG 1 cut(s) 1191
SphI GCATGC 1 cut(s) 1133
Sse9I AATT 8 cut(s) 21, 63, 74, 82, 146, 177, 444, 858
SsiI CCGC 3 cut(s) 251, 435, 597
SspI AATATT 2 cut(s) 661, 947
SspMI CTAG 2 cut(s) 137, 971
StyD4I CCNGG 9 cut(s) 221, 235, 266, 415, 452, 453, 1043, 1213, 1231
StyI CCWWGG 2 cut(s) 1012, 1069
TaaI ACNGT 4 cut(s) 40, 167, 605, 643
TaiI ACGT 2 cut(s) 305, 443
TaqI TCGA 3 cut(s) 428, 479, 856
TasI AATT 8 cut(s) 21, 63, 74, 82, 146, 177, 444, 858
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 5 cut(s) 35, 210, 443, 657, 914
Tru9I TTAA 5 cut(s) 35, 210, 443, 657, 914
TscAI CASTG 3 cut(s) 337, 987, 1005
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 119, 743
TspMI CCCGGG 1 cut(s) 453
TspRI CASTG 3 cut(s) 337, 987, 1005
Tth111I GACNNNGTC 1 cut(s) 603
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 3 cut(s) 239, 264, 1187
XapI RAATTY 2 cut(s) 146, 858
XceI RCATGY 3 cut(s) 427, 958, 1133
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmaI CCCGGG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 2 cut(s) 137, 971
Zsp2I ATGCAT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.