Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004507

Physical Location & Seq

Genomic Coordinates Reverse (-)

28042549 .. 28045861

Gene Structure 3313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGAAGGCCAAAATTCTTATCCACAACCCCGAGAAGTTCCCTCCTCCCCTCCTCAGTGTTCCTTCCTTGTCATCCTTCACAGGCTCAGACCATTTTCTACTTGTATCACAGTCACTACTTCACTGTTATCTGTCTCAGCCCCAGAAGCTTTACTCAGAACAAAAGCTTTCGGCTTTCATGGCGACCCACTTCTCTCCTGCAACCCCTGTCCGCTTCGTCCTCCAGCCCAAGCAAAACCCTCCCAAAACCCTCCTTTCCATTCGAGATTCTTTTGGTGGAGGGTCGGCGTGTAAGAAATGCCAGCCTAGAACTGTTAATGTGTGCTCATGGAGCTCGTCTGCTAACTATGTGAGGTCTCAGGATGGTGCTGCAAGGCTTTCGGGCAATGCCAGTGTTGTGAAGAAGCAATTGTTCCAAAAGAGAGTTGGAATTGTAAGGGCTGCTACTATCGAAGAAATAGAAGCGGAGAAGTCTTTGATAAAGAAAGATGCTGAAGGAAGGATGGAAAGGACTCTTGAAACGGTACGATCCAATTTCAATTCTATTAGGACAGGGAGGGCAAGCCCGGCCATGCTGGATAAGATTGAGGTTGAATACTATGGAAGCCCAGTTGGCTTGAAGACCATTGCTAATATCAGTTCTCCTGATGCAAGTTCCTTCTTGGTTCAGCCATACGACAAATCCAGCTTAAAAGCTATAGAGAAGGCCATCGTTAGCTCTGATCTTGGTTTGACTCCAAATAATGATGGAGAAGTAATTCGGTTGACCCTACCTCAACTTACATCAGAGAGAAGGAAGGAATTGTCAAAAATTGTGGCAAAACAGACCGAAGAGGGAAAGGTGGCATTGAGGAACATAAGAAGGGATGCTCTAAAAACTCTTGAAAAACTTGAGAAGGCAAAAAAGCTCTCTGAAGATAATGTAAAGGACTTATCAAGTGATTTGCAGAAATTGACAGATGAGTATGTGAAGAAGCTTGATGCCATATTCAAACAAAAAGAGAAGGAATTGCTGAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002181 GO:0002184 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0022414 GO:0032501 GO:0032502 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0042742 GO:0043021 GO:0043023 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045087 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0071840 GO:0098542 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

342

Amino Acids

37.85

Weight (kDa)

9.61

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRF	PF01765	177 - 339	1.9e-65	Ribosome recycling factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63190
fragaria_vesca	FvH4_2g23500 FvH4_2g23500
malus_domestica	MD03G1263900.v1.1 MD11G1284600.v1.1
prunus_persica	Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1 Prupe.8G240300_v2.0.a1
pyrus_communis	pycom03g21160 pycom11g25210
rosa_chinensis	RchiOBHm_Chr6g0290971
rosa_laevigata	RLG00000007645 RLG00000009086 RLG00000012159 RLG00000013184
rosa_multiflora	Rmu_sc0004191.1_g000054
rosa_roxburghii	Rroxscaffold_7G00176500
rosa_rugosa	Rorug03G0346200 Rorug05G0540500 Rorug06G0216800
rosa_samantha	Rh1CG191500 Rh5AG174800 Rh5DG051200 Rh6AG326500 Rh6BG334100 Rh6CG340200 Rh6DG327400 Rh7BG357000
rosa_wichuraiana	Rw1G021130 Rw2G030470 Rw6G028390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	214, 467
AclWI	GGATC	1 cut(s)	525
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	2 cut(s)	516, 936
AfaI	GTAC	1 cut(s)	528
AgsI	TTSAA	6 cut(s)	521, 541, 596, 622, 887, 994
AluBI	AGCT	8 cut(s)	151, 169, 336, 690, 698, 720, 910, 979
AluI	AGCT	8 cut(s)	151, 169, 336, 690, 698, 720, 910, 979
Alw21I	GWGCWC	2 cut(s)	329, 338
Alw26I	GTCTC	2 cut(s)	141, 363
AlwI	GGATC	1 cut(s)	525
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	3 cut(s)	9, 570, 708
ApeKI	GCWGC	2 cut(s)	371, 443
ApoI	RAATTY	1 cut(s)	15
Asp700I	GAANNNNTTC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	2 cut(s)	329, 338
BbvI	GCAGC	2 cut(s)	358, 430
BccI	CCATC	4 cut(s)	359, 499, 719, 743
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	2 cut(s)	141, 363
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	699
BglI	GCCNNNNNGGC	1 cut(s)	615
BisI	GCNGC	2 cut(s)	372, 444
BlsI	GCNGC	2 cut(s)	373, 445
Bme1390I	CCNGG	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	4 cut(s)	481, 640, 859, 973
BmuI	ACTGGG	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	914
BpuMI	CCSGG	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	393, 611
Bse3DI	GCAATG	2 cut(s)	394, 627
BseGI	GGATG	4 cut(s)	74, 370, 510, 874
BseMI	GCAATG	2 cut(s)	394, 627
BseMII	CTCAG	5 cut(s)	70, 102, 152, 171, 374
BseNI	ACTGG	2 cut(s)	393, 611
BseRI	GAGGAG	2 cut(s)	36, 44
BseXI	GCAGC	2 cut(s)	358, 430
BshFI	GGCC	3 cut(s)	11, 572, 710
BsiHKAI	GWGCWC	2 cut(s)	329, 338
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	569
BsmAI	GTCTC	2 cut(s)	141, 363
BsnI	GGCC	3 cut(s)	11, 572, 710
Bso31I	GGTCTC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	329, 338
Bsp143I	GATC	2 cut(s)	530, 724
BspACI	CCGC	2 cut(s)	214, 467
BspANI	GGCC	3 cut(s)	11, 572, 710
BspCNI	CTCAG	5 cut(s)	69, 101, 151, 170, 373
BspPI	GGATC	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	2 cut(s)	394, 627
BsrI	ACTGG	2 cut(s)	393, 611
BssMI	GATC	2 cut(s)	530, 724
Bst4CI	ACNGT	4 cut(s)	114, 128, 316, 526
Bst6I	CTCTTC	1 cut(s)	828
BstC8I	GCNNGC	2 cut(s)	305, 565
BstDEI	CTNAG	5 cut(s)	56, 88, 138, 157, 360
BstF5I	GGATG	4 cut(s)	74, 370, 510, 874
BstKTI	GATC	2 cut(s)	533, 727
BstMAI	GTCTC	2 cut(s)	141, 363
BstMBI	GATC	2 cut(s)	530, 724
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 182, 333, 569, 615
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	358, 430
BstV2I	GAAGAC	1 cut(s)	629
BsuRI	GGCC	3 cut(s)	11, 572, 710
BtsCI	GGATG	4 cut(s)	74, 370, 510, 874
BtsIMutI	CAGTG	3 cut(s)	64, 124, 400
Cac8I	GCNNGC	2 cut(s)	305, 565
Csp6I	GTAC	1 cut(s)	527
CspCI	CAANNNNNGTGG	2 cut(s)	798, 833
CviAII	CATG	3 cut(s)	181, 330, 574
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	5 cut(s)	56, 88, 138, 157, 360
DpnI	GATC	2 cut(s)	532, 726
DpnII	GATC	2 cut(s)	530, 724
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	516, 936
Eco88I	CYCGRG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	3 cut(s)	184, 333, 577
FatI	CATG	3 cut(s)	180, 329, 573
Fnu4HI	GCNGC	2 cut(s)	372, 444
FokI	GGATG	4 cut(s)	61, 377, 517, 881
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	372, 444
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	372, 444
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	11, 572, 710
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	3 cut(s)	184, 333, 577
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HindIII	AAGCTT	3 cut(s)	149, 167, 977
HinfI	GANTC	3 cut(s)	269, 514, 736
HpaII	CCGG	1 cut(s)	569
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	5 cut(s)	91, 160, 724, 790, 916
Hpy188III	TCNNGA	5 cut(s)	266, 362, 518, 647, 884
Hpy8I	GTNNAC	1 cut(s)	768
HpyCH4III	ACNGT	4 cut(s)	114, 128, 316, 526
HpyCH4V	TGCA	4 cut(s)	203, 374, 653, 949
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 182, 333, 569, 615
HpyF3I	CTNAG	5 cut(s)	56, 88, 138, 157, 360
Hsp92II	CATG	3 cut(s)	184, 333, 577
Kzo9I	GATC	2 cut(s)	530, 724
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	2 cut(s)	358, 430
LweI	GCATC	4 cut(s)	481, 640, 859, 973
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	2 cut(s)	532, 726
MboI	GATC	2 cut(s)	530, 724
MboII	GAAGA	6 cut(s)	415, 467, 634, 845, 929, 985
MfeI	CAATTG	1 cut(s)	410
MhlI	GDGCHC	2 cut(s)	329, 338
MlyI	GAGTC	2 cut(s)	508, 730
MmeI	TCCRAC	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	2 cut(s)	318, 692
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	569
MunI	CAATTG	1 cut(s)	410
MwoI	GCNNNNNNNGC	5 cut(s)	148, 182, 333, 569, 615
NciI	CCSGG	1 cut(s)	569
NdeII	GATC	2 cut(s)	530, 724
NlaIII	CATG	3 cut(s)	184, 333, 577
NmuCI	GTSAC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	373, 445
PleI	GAGTC	2 cut(s)	508, 730
PpsI	GAGTC	2 cut(s)	508, 730
Psp124BI	GAGCTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	318, 692
SatI	GCNGC	2 cut(s)	372, 444
Sau3AI	GATC	2 cut(s)	530, 724
SchI	GAGTC	2 cut(s)	508, 730
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	2 cut(s)	329, 338
SfaNI	GCATC	4 cut(s)	481, 640, 859, 973
SfcI	CTRYAG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
SsiI	CCGC	2 cut(s)	214, 467
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	4 cut(s)	114, 128, 316, 526
TaqI	TCGA	2 cut(s)	265, 453
TaqII	GACCGA	1 cut(s)	845
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	318, 692
Tru9I	TTAA	2 cut(s)	318, 692
TscAI	CASTG	3 cut(s)	64, 131, 400
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	2 cut(s)	371, 443
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	64, 131, 400
XapI	RAATTY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.