Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009604

Physical Location & Seq

Genomic Coordinates Forward (+)

29016426 .. 29022922

Gene Structure 6497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2964 bp

ATGGAGGATCCCTCGGCGGAGATGGAGATTGGGACCTCCCAGGAGTCGTTCGGGAAGTTCTTGGACTCGCAGAGGGAGCTTTTCCACAGCCTAAAGATCGATCAGCTCCAGAGAATCGTCGGCACCCAATGCAAACTCACCGGCGTCAATCCTCTCTCCCAAGAGATGGCAGCTGGTGCTCTTTCAATTAAGATTGATGGTCCAATTGCAGGAAAAAGACCTAGGGATTTGCTAAATCCGAAGGCTATAAAGTATATGCAATCTGTTTTTTCGATTAAAGATGCAATTAGTAAGAAGGAATCTCGGGAGCTCAATGCTCTATTCGGCATTACAGTCACACAGGTTCGTGATTTCTTTAACAGTCAACGGTCGAGAGTTAGAAAACTAATACAGTTGTCAAGGGAAAAGGCCTTGAAATCCGGTGAACATAAAGATTTGCAGGATGGGGTCTCAACAGGCCCTGATTCTTTGACACCAAGTGATCCAGTTCCCTTGAACTCTGTTGGTCCCTCGAATGTTGAAGACGCACCATCATGCTCAACACAGGATGATGCTCCTTCTGGATTAGACGACGTAGATAAATGCTTTGTTGAAGATATTTTCAACCTGATGCGGAAGGAAGAAACATTTTCTGGGCAAGTGAAACTGATGGAGTGGATATTGCGGATACAAAATTCTTCAGTATTATGTTGGTTTTTAACTAAAGGTGGTGTAATGATTTTAGTAACATGGTTGAGTCAAGCTGCTGTCGAAGAACAAACAAATGTTTTACTTGTTATCTTAAAGGTTCTTTGTCATTTGCCTCTACATAAAGCACTTCCTTTGCATATGTCAGCCGTACTGCAAAGTGTTAATCGACTGCGGTTTTACAGGACAGCAGACATATCAAACAGGGCAAGGGTTTTGCTATCAAGGTGGAGCAAGTTATTAGCAAAAAACCAAGCTTTGGAAAAACCAAATGGCATTAAAACATCTAGTGATTCAGGACAAGAGTTAGTAATTCTGAAGCAGAGTATCGATGAAGTTATGGGCGATGAATCGTGGAAGTCAAATATGGATATTTCTGAAGACTTACTTGGAATACCATTTGAAAGTGCAGAGAATTTCAGTAAAGTAAATGCTTCAGAACCCTTGAAGTTATTGACAGCATCATCAGATGAGTCAAATAAGAAGAACATCCTCGGTGTATCTTCATCTCAATTTCGAGAGCGCAGAAAAGTTCAGTTGGTGGAACAACCTGGCCAAAAATCTGCTGGGAGAAGTGTTCAGGCCACAAGGACAATACCTGTGAGTCAAGCTCGTCCAATGTCTGCTGATGATATCCAAAAAGCAAAAATGCGAGCACAATTTATGCAGAGCAAGTATGGGAAATCTGGTTTATCCCATGAAAATAAAGAATTGAAGACTGAAGGTGTGAAAAAACTTATAACTTCTCAGGCAAGCATTTTGCCTGTGGTACCCAAAGTTCCAATTCGGTATAACATTGAGGAACCCAAGATACCTGCGACATATCCTTTGAAAGAGTGGGAAACTCCTAGTAGGCCCGAAACTACTCTTGCCCCAAAGCGGTCTATGGATTTGAAGGAGCCCATATTAGACAAGTGCAGGAGAATCCAGATCCCATGGAAGATGCCTCCAGAAATAAAACTCGATCCTTCGTGGAGTGTTGGTGGTGGTGAGAATGGCAAAGAAATTGAAGTCCAGAGAAACAGAAACCGCCGTGAGAAGGAAACTATTTACCGGACAGTTCAGGAGACACCGTCTAACCCGAAGGAACCATGGGACATTGAAATGGACTACGATGATTCTTTAACACCAGAAATACCAATAGAACAGCCGCCTGATGTTGCCGATTCCACTGAAACACAAACTTTCCCTAGAGAAGAATATTATCCAGAAACAATGGTCGTTCCTTCTCAGGGAGCAAACAGTGTCGCTTCCTTGCCAACGGCCTTATCTCAAATCAACAAAGCAAGCGCAGCTGAACCGGATCTAGAACTGCTTGCAGTACTGCTAAAAAATCCAGAACTGGTGTTTGCTTTGACTTCCGGCCAGGCTGCTAACTTGTCGAGCAAGGATACAGTAAAACTGCTGGATATGATTAAGTCTGGTGGGGCTGGTGTTGCCGGTAGTGTAAATGGTTTAGGTAGAAAAATGGAGGAGAGGGTCGAGGTTTCTCTTCCATCTCCGACACCTTCGAGCAACCCTGGAACGAGTGGATGGAAAGGAGATGCTGGAAGGAATGCATTTCCCCAACAGATGCTACAGGTTTCATCTGCTCATCGCATTATTCCGCCCCAACGGCTATCAACTCTGCAGCCAGCGGTACCTTCATACTCACCGGATTATTATCCCATGCAAACACCGGCCTCGGAGATGACTTCTATGACGAAGAACACGCACTTTCACAACTTATCCAACACAGCTGTGCCCTCGGTTTGGGGTGAGAGCACGAGCAATGTCGAACGAGCACCTCTGTCTAACTCATATAATCTAGCAGAAATGCAGCAGCCCTTGTTTTCGACTATGGCAAGGCAACAAAGACAGCCGCAGCCATTGCAACAACAACAACAACGTCGTTTTTCTACTCCTACGTACTCGCCTAAACCGCCGATGGGAAAAGCGGTCCCTCCGTCCGAGTCGTGGAGAGCCGGGCAGGATTTGACTTCAAATTACCATTACTTAGAGAACCAAAACCAGTATAACGCATCGCATGGGGGACATTTGCAGCCTCACTTGTCAGGTCCTTCTTGGGAAGGATATGAACGTGTTGGCAGCAACCAAGATTTCCATTCACGGAGTCCGGATGATGATAGTCCGAGTAGAAATCCCGGGTTCATGTACGGAACAGAACCTAGAACAAATCCGGGACGGGATTACAGGTCAATGGGAAGGAATCCTGCAGGATACCGCGGTCAGACTAGGCAGCAGGGGAACAGATGGCCTAACCGCGGAGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

988

Amino Acids

109.78

Weight (kDa)

8.38

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02560 AT4G02560
fragaria_vesca	FvH4_2g25100 FvH4_2g25100 FvH4_2g25100
malus_domestica	MD03G1284300.v1.1 MD11G1302000.v1.1
prunus_persica	Prupe.8G255600_v2.0.a1 Prupe.8G255600_v2.0.a1
pyrus_communis	pycom03g22510 pycom11g26460
rosa_chinensis	RchiOBHm_Chr6g0293161
rosa_laevigata	RLG00000011970
rosa_multiflora	Rmu_sc0014786.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174400
rosa_rugosa	Rorug06G0233000 Rorug06G0233100
rosa_samantha	Rh6AG345700 Rh6BG353500 Rh6CG359900 Rh6DG346300
rosa_wichuraiana	Rw6G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1427
Acc36I	ACCTGC	1 cut(s)	1510
Acc65I	GGTACC	2 cut(s)	1456, 2326
AccB1I	GGYRCC	3 cut(s)	122, 1456, 2326
AccB7I	CCANNNNNTGG	2 cut(s)	166, 946
AccII	CGCG	2 cut(s)	2913, 2952
AccIII	TCCGGA	1 cut(s)	2803
AclWI	GGATC	6 cut(s)	2, 15, 476, 1612, 1646, 1998
AcoI	YGGCCR	2 cut(s)	1240, 2050
AcsI	RAATTY	2 cut(s)	673, 1102
AcuI	CTGAAG	5 cut(s)	663, 1025, 1086, 1107, 1428
AcyI	GRCGYC	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	6 cut(s)	840, 1458, 2010, 2328, 2597, 2843
AflIII	ACRYGT	1 cut(s)	2767
AjnI	CCWGG	4 cut(s)	39, 1237, 2052, 2206
AjuI	GAANNNNNNNTTGG	2 cut(s)	1059, 1091
AleI	CACNNNNGTG	1 cut(s)	2426
AluBI	AGCT	9 cut(s)	79, 106, 173, 310, 743, 944, 1298, 1982, 2426
AluI	AGCT	9 cut(s)	79, 106, 173, 310, 743, 944, 1298, 1982, 2426
Alw21I	GWGCWC	5 cut(s)	181, 312, 1345, 2453, 2473
Alw26I	GTCTC	3 cut(s)	454, 1748, 2952
AlwI	GGATC	6 cut(s)	2, 15, 476, 1612, 1646, 1998
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	2 cut(s)	303, 2831
Aor13HI	TCCGGA	1 cut(s)	2803
AoxI	GGCC	9 cut(s)	408, 457, 1240, 1269, 1541, 1950, 2050, 2367, 2942
ApoI	RAATTY	2 cut(s)	673, 1102
ArsI	GACNNNNNNTTYG	2 cut(s)	1498, 1530
Asp718I	GGTACC	2 cut(s)	1456, 2326
AspA2I	CCTAGG	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	1212, 1979
AspS9I	GGNCC	7 cut(s)	33, 200, 458, 506, 1542, 2626, 2744
AsuC2I	CCSGG	4 cut(s)	2653, 2832, 2833, 2868
AsuHPI	GGTGA	5 cut(s)	130, 434, 1688, 2331, 2456
AvaI	CYCGRG	2 cut(s)	303, 2831
AvaII	GGWCC	5 cut(s)	33, 200, 506, 2626, 2744
AvrII	CCTAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	2433
BaeI	ACNNNNGTAYC	2 cut(s)	2899, 2932
BalI	TGGCCA	1 cut(s)	1242
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	3 cut(s)	122, 1456, 2326
BanII	GRGCYC	2 cut(s)	312, 1590
BauI	CACGAG	1 cut(s)	2452
BbsI	GAAGAC	3 cut(s)	528, 1074, 1409
Bbv12I	GWGCWC	5 cut(s)	181, 312, 1345, 2453, 2473
BceAI	ACGGC	4 cut(s)	821, 1704, 1965, 2318
BciT130I	CCWGG	4 cut(s)	41, 1239, 2054, 2208
BciVI	GTATCC	3 cut(s)	660, 2071, 2900
BcnI	CCSGG	4 cut(s)	2653, 2832, 2833, 2868
BcoDI	GTCTC	3 cut(s)	454, 1748, 2952
BfaI	CTAG	8 cut(s)	222, 975, 1536, 1878, 1994, 2495, 2856, 2922
BfmI	CTRYAG	3 cut(s)	2264, 2315, 2901
BfuAI	ACCTGC	1 cut(s)	1510
BfuI	GTATCC	3 cut(s)	660, 2071, 2900
BglI	GCCNNNNNGGC	1 cut(s)	2302
BlnI	CCTAGG	1 cut(s)	221
BmcAI	AGTACT	1 cut(s)	2010
Bme1390I	CCNGG	8 cut(s)	41, 1239, 2054, 2208, 2653, 2832, 2833, 2868
Bme18I	GGWCC	5 cut(s)	33, 200, 506, 2626, 2744
BmeT110I	CYCGRG	2 cut(s)	303, 2831
BmgT120I	GGNCC	7 cut(s)	33, 200, 458, 506, 1542, 2626, 2744
BmrFI	CCNGG	8 cut(s)	41, 1239, 2054, 2208, 2653, 2832, 2833, 2868
BmsI	GCATC	8 cut(s)	271, 541, 600, 1157, 1620, 2221, 2250, 2717
BpiI	GAAGAC	3 cut(s)	528, 1074, 1409
BplI	GAGNNNNNCTC	3 cut(s)	28, 1282, 1314
BpmI	CTGGAG	2 cut(s)	92, 1620
BpuMI	CCSGG	4 cut(s)	2653, 2832, 2833, 2868
Bsa29I	ATCGAT	2 cut(s)	99, 1017
BsaAI	YACGTR	1 cut(s)	2595
BsaBI	GATNNNNATC	1 cut(s)	2349
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	454
BsaWI	WCCGGW	5 cut(s)	419, 1740, 1987, 2341, 2803
BsaXI	ACNNNNNCTCC	4 cut(s)	1654, 1684, 1745, 1775
Bse118I	RCCGGY	3 cut(s)	140, 2126, 2365
Bse1I	ACTGG	3 cut(s)	485, 2034, 2698
Bse3DI	GCAATG	2 cut(s)	2464, 2555
Bse8I	GATNNNNATC	1 cut(s)	2349
BseAI	TCCGGA	1 cut(s)	2803
BseBI	CCWGG	4 cut(s)	41, 1239, 2054, 2208
BseCI	ATCGAT	2 cut(s)	99, 1017
BseGI	GGATG	5 cut(s)	448, 553, 1176, 2225, 2812
BseJI	GATNNNNATC	1 cut(s)	2349
BseMI	GCAATG	2 cut(s)	2464, 2555
BseMII	CTCAG	2 cut(s)	1448, 1931
BseNI	ACTGG	3 cut(s)	485, 2034, 2698
BseRI	GAGGAG	1 cut(s)	2174
BseSI	GKGCMC	1 cut(s)	2433
BseYI	CCCAGC	1 cut(s)	1253
BsgI	GTGCAG	2 cut(s)	1116, 1624
Bsh1236I	CGCG	2 cut(s)	2913, 2952
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	9 cut(s)	410, 459, 1242, 1271, 1543, 1952, 2052, 2369, 2944
BshNI	GGYRCC	3 cut(s)	122, 1456, 2326
BshVI	ATCGAT	2 cut(s)	99, 1017
BsiEI	CGRYCG	1 cut(s)	371
BsiHKAI	GWGCWC	5 cut(s)	181, 312, 1345, 2453, 2473
BsiHKCI	CYCGRG	2 cut(s)	303, 2831
BslFI	GGGAC	6 cut(s)	46, 492, 1796, 2612, 2733, 2883
BsmAI	GTCTC	3 cut(s)	454, 1748, 2952
BsmFI	GGGAC	6 cut(s)	46, 492, 1796, 2612, 2733, 2883
BsmI	GAATGC	1 cut(s)	2248
BsnI	GGCC	9 cut(s)	410, 459, 1242, 1271, 1543, 1952, 2052, 2369, 2944
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	2 cut(s)	303, 2831
Bsp1286I	GDGCHC	7 cut(s)	181, 312, 1345, 1590, 2433, 2453, 2473
Bsp13I	TCCGGA	1 cut(s)	2803
Bsp143I	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
Bsp19I	CCATGG	2 cut(s)	1622, 1778
BspANI	GGCC	9 cut(s)	410, 459, 1242, 1271, 1543, 1952, 2052, 2369, 2944
BspCNI	CTCAG	2 cut(s)	1447, 1930
BspDI	ATCGAT	2 cut(s)	99, 1017
BspEI	TCCGGA	1 cut(s)	2803
BspFNI	CGCG	2 cut(s)	2913, 2952
BspMAI	CTGCAG	2 cut(s)	2319, 2905
BspMI	ACCTGC	1 cut(s)	1510
BspPI	GGATC	6 cut(s)	2, 15, 476, 1612, 1646, 1998
BspT107I	GGYRCC	3 cut(s)	122, 1456, 2326
BspTNI	GGTCTC	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	2464, 2555
BsrFI	RCCGGY	3 cut(s)	140, 2126, 2365
BsrI	ACTGG	3 cut(s)	485, 2034, 2698
BssAI	RCCGGY	3 cut(s)	140, 2126, 2365
BssMI	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	2452
BssT1I	CCWWGG	3 cut(s)	221, 1622, 1778
Bst2BI	CACGAG	1 cut(s)	2452
Bst2UI	CCWGG	4 cut(s)	41, 1239, 2054, 2208
Bst4CI	ACNGT	8 cut(s)	334, 362, 369, 393, 1747, 1761, 1931, 2083
Bst6I	CTCTTC	1 cut(s)	2184
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	3 cut(s)	129, 176, 2557
BstBAI	YACGTR	1 cut(s)	2595
BstC8I	GCNNGC	5 cut(s)	1341, 1441, 1975, 2004, 2322
BstDEI	CTNAG	3 cut(s)	1434, 1917, 2683
BstDSI	CCRYGG	4 cut(s)	1622, 1778, 2911, 2950
BstF5I	GGATG	5 cut(s)	448, 553, 1176, 2225, 2812
BstFNI	CGCG	2 cut(s)	2913, 2952
BstHHI	GCGC	2 cut(s)	1212, 1979
BstKTI	GATC	7 cut(s)	10, 99, 103, 484, 1620, 1654, 1993
BstMAI	GTCTC	3 cut(s)	454, 1748, 2952
BstMBI	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
BstMCI	CGRYCG	1 cut(s)	371
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 129, 176, 1979, 2123, 2302, 2557, 2608
BstNI	CCWGG	4 cut(s)	41, 1239, 2054, 2208
BstSCI	CCNGG	8 cut(s)	39, 1237, 2052, 2206, 2651, 2830, 2831, 2866
BstSFI	CTRYAG	3 cut(s)	2264, 2315, 2901
BstSLI	GKGCMC	1 cut(s)	2433
BstSNI	TACGTA	1 cut(s)	2595
BstUI	CGCG	2 cut(s)	2913, 2952
BstV2I	GAAGAC	3 cut(s)	528, 1074, 1409
BstX2I	RGATCY	3 cut(s)	7, 1617, 1990
BstYI	RGATCY	3 cut(s)	7, 1617, 1990
Bsu15I	ATCGAT	2 cut(s)	99, 1017
BsuI	GTATCC	3 cut(s)	660, 2071, 2900
BsuRI	GGCC	9 cut(s)	410, 459, 1242, 1271, 1543, 1952, 2052, 2369, 2944
BsuTUI	ATCGAT	2 cut(s)	99, 1017
BtgI	CCRYGG	4 cut(s)	1622, 1778, 2911, 2950
BtgZI	GCGATG	3 cut(s)	1047, 2267, 2694
BtsCI	GGATG	5 cut(s)	448, 553, 1176, 2225, 2812
BtsIMutI	CAGTG	2 cut(s)	1857, 1936
BveI	ACCTGC	1 cut(s)	1510
Cac8I	GCNNGC	5 cut(s)	1341, 1441, 1975, 2004, 2322
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	2 cut(s)	1212, 1979
Cfr10I	RCCGGY	3 cut(s)	140, 2126, 2365
Cfr13I	GGNCC	7 cut(s)	33, 200, 458, 506, 1542, 2626, 2744
Cfr42I	CCGCGG	2 cut(s)	2914, 2953
Cfr9I	CCCGGG	1 cut(s)	2831
ClaI	ATCGAT	2 cut(s)	99, 1017
CseI	GACGC	2 cut(s)	133, 533
Csp6I	GTAC	6 cut(s)	839, 1457, 2009, 2327, 2596, 2842
CviAII	CATG	8 cut(s)	534, 729, 1385, 1623, 1779, 2356, 2714, 2839
CviQI	GTAC	6 cut(s)	839, 1457, 2009, 2327, 2596, 2842
DdeI	CTNAG	3 cut(s)	1434, 1917, 2683
DpnI	GATC	7 cut(s)	9, 98, 102, 483, 1619, 1653, 1992
DpnII	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	2 cut(s)	1240, 2050
Eam1104I	CTCTTC	1 cut(s)	2184
EarI	CTCTTC	1 cut(s)	2184
EciI	GGCGGA	2 cut(s)	32, 2283
Ecl136II	GAGCTC	1 cut(s)	310
Eco105I	TACGTA	1 cut(s)	2595
Eco130I	CCWWGG	3 cut(s)	221, 1622, 1778
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	312, 1590
Eco31I	GGTCTC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	1321
Eco47I	GGWCC	5 cut(s)	33, 200, 506, 2626, 2744
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	5 cut(s)	663, 1025, 1086, 1107, 1428
Eco88I	CYCGRG	2 cut(s)	303, 2831
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	3 cut(s)	33, 458, 2744
EcoRII	CCWGG	4 cut(s)	39, 1237, 2052, 2206
EcoRV	GATATC	1 cut(s)	1321
EcoT14I	CCWWGG	3 cut(s)	221, 1622, 1778
EcoT22I	ATGCAT	1 cut(s)	2248
EcoT38I	GRGCYC	2 cut(s)	312, 1590
ErhI	CCWWGG	3 cut(s)	221, 1622, 1778
FaeI	CATG	8 cut(s)	537, 732, 1388, 1626, 1782, 2359, 2717, 2842
FalI	AAGNNNNNCTT	2 cut(s)	1059, 1091
FaqI	GGGAC	6 cut(s)	46, 492, 1796, 2612, 2733, 2883
FatI	CATG	8 cut(s)	533, 728, 1384, 1622, 1778, 2355, 2713, 2838
FauNDI	CATATG	1 cut(s)	828
FokI	GGATG	5 cut(s)	455, 560, 1163, 2232, 2819
FriOI	GRGCYC	2 cut(s)	312, 1590
FspBI	CTAG	8 cut(s)	222, 975, 1536, 1878, 1994, 2495, 2856, 2922
GlaI	GCGC	2 cut(s)	1211, 1978
GsaI	CCCAGC	1 cut(s)	1257
GsuI	CTGGAG	2 cut(s)	92, 1620
HaeIII	GGCC	9 cut(s)	410, 459, 1242, 1271, 1543, 1952, 2052, 2369, 2944
HgaI	GACGC	2 cut(s)	133, 533
HhaI	GCGC	2 cut(s)	1212, 1979
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	8 cut(s)	537, 732, 1388, 1626, 1782, 2359, 2717, 2842
Hin6I	GCGC	2 cut(s)	1210, 1977
HinP1I	GCGC	2 cut(s)	1210, 1977
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HindIII	AAGCTT	1 cut(s)	942
HphI	GGTGA	5 cut(s)	130, 434, 1688, 2331, 2456
Hpy166II	GTNNAC	2 cut(s)	365, 425
Hpy8I	GTNNAC	2 cut(s)	365, 425
Hpy99I	CGWCG	3 cut(s)	122, 575, 2580
HpyCH4III	ACNGT	8 cut(s)	334, 362, 369, 393, 1747, 1761, 1931, 2083
HpyCH4IV	ACGT	4 cut(s)	573, 2575, 2594, 2767
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 129, 176, 1979, 2123, 2302, 2557, 2608
HpyF3I	CTNAG	3 cut(s)	1434, 1917, 2683
HpySE526I	ACGT	4 cut(s)	573, 2575, 2594, 2767
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	8 cut(s)	537, 732, 1388, 1626, 1782, 2359, 2717, 2842
HspAI	GCGC	2 cut(s)	1210, 1977
Kpn2I	TCCGGA	1 cut(s)	2803
KpnI	GGTACC	2 cut(s)	1460, 2330
KspI	CCGCGG	2 cut(s)	2914, 2953
Kzo9I	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
LmnI	GCTCC	7 cut(s)	76, 111, 307, 559, 918, 1585, 1922
LweI	GCATC	8 cut(s)	271, 541, 600, 1157, 1620, 2221, 2250, 2717
MaeI	CTAG	8 cut(s)	222, 975, 1536, 1878, 1994, 2495, 2856, 2922
MaeII	ACGT	4 cut(s)	573, 2575, 2594, 2767
MaeIII	GTNAC	2 cut(s)	334, 724
MalI	GATC	7 cut(s)	9, 98, 102, 483, 1619, 1653, 1992
MboI	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	3 cut(s)	7, 1617, 1990
MhlI	GDGCHC	7 cut(s)	181, 312, 1345, 1590, 2433, 2453, 2473
MlsI	TGGCCA	1 cut(s)	1242
MluNI	TGGCCA	1 cut(s)	1242
MlyI	GAGTC	7 cut(s)	53, 59, 745, 1169, 1300, 2648, 2809
MmeI	TCCRAC	2 cut(s)	2213, 2442
Mox20I	TGGCCA	1 cut(s)	1242
Mph1103I	ATGCAT	1 cut(s)	2248
MroI	TCCGGA	1 cut(s)	2803
MscI	TGGCCA	1 cut(s)	1242
MseI	TTAA	9 cut(s)	189, 276, 357, 698, 782, 852, 966, 1811, 2103
MslI	CAYNNNNRTG	3 cut(s)	532, 1790, 2426
Msp20I	TGGCCA	1 cut(s)	1242
MspA1I	CMGCKG	6 cut(s)	173, 1982, 2324, 2426, 2913, 2952
MspR9I	CCNGG	8 cut(s)	41, 1239, 2054, 2208, 2653, 2832, 2833, 2868
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	2248
MvaI	CCWGG	4 cut(s)	41, 1239, 2054, 2208
MvnI	CGCG	2 cut(s)	2913, 2952
MwoI	GCNNNNNNNGC	8 cut(s)	76, 129, 176, 1979, 2123, 2302, 2557, 2608
NciI	CCSGG	4 cut(s)	2653, 2832, 2833, 2868
NcoI	CCATGG	2 cut(s)	1622, 1778
NdeI	CATATG	1 cut(s)	828
NdeII	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
NlaIII	CATG	8 cut(s)	537, 732, 1388, 1626, 1782, 2359, 2717, 2842
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	2248
OliI	CACNNNNGTG	1 cut(s)	2426
PceI	AGGCCT	1 cut(s)	410
PctI	GAATGC	1 cut(s)	2248
PfeI	GAWTC	9 cut(s)	114, 299, 464, 980, 1037, 1611, 1805, 1853, 2896
PflFI	GACNNNGTC	1 cut(s)	1759
PflMI	CCANNNNNTGG	2 cut(s)	166, 946
PfoI	TCCNGGA	1 cut(s)	2866
PleI	GAGTC	7 cut(s)	52, 59, 744, 1168, 1299, 2647, 2808
PpsI	GAGTC	7 cut(s)	52, 59, 744, 1168, 1299, 2647, 2808
Ppu21I	YACGTR	1 cut(s)	2595
PpuMI	RGGWCCY	2 cut(s)	33, 2744
PsiI	TTATAA	1 cut(s)	1427
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	2 cut(s)	33, 2744
Psp6I	CCWGG	4 cut(s)	39, 1237, 2052, 2206
PspFI	CCCAGC	1 cut(s)	1253
PspGI	CCWGG	4 cut(s)	39, 1237, 2052, 2206
PspPI	GGNCC	7 cut(s)	33, 200, 458, 506, 1542, 2626, 2744
PspPPI	RGGWCCY	2 cut(s)	33, 2744
PsrI	GAACNNNNNNTAC	4 cut(s)	1449, 1481, 1482, 1514
PstI	CTGCAG	2 cut(s)	2319, 2905
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	3 cut(s)	7, 1617, 1990
PsyI	GACNNNGTC	1 cut(s)	1759
PvuII	CAGCTG	3 cut(s)	173, 1982, 2426
RsaI	GTAC	6 cut(s)	840, 1458, 2010, 2328, 2597, 2843
RsaNI	GTAC	6 cut(s)	839, 1457, 2009, 2327, 2596, 2842
RseI	CAYNNNNRTG	3 cut(s)	532, 1790, 2426
SacI	GAGCTC	1 cut(s)	312
SacII	CCGCGG	2 cut(s)	2914, 2953
SaqAI	TTAA	9 cut(s)	189, 276, 357, 698, 782, 852, 966, 1811, 2103
Sau3AI	GATC	7 cut(s)	7, 96, 100, 481, 1617, 1651, 1990
Sau96I	GGNCC	7 cut(s)	33, 200, 458, 506, 1542, 2626, 2744
SbfI	CCTGCAGG	1 cut(s)	2905
ScaI	AGTACT	1 cut(s)	2010
SchI	GAGTC	7 cut(s)	53, 59, 745, 1169, 1300, 2648, 2809
ScrFI	CCNGG	8 cut(s)	41, 1239, 2054, 2208, 2653, 2832, 2833, 2868
SdaI	CCTGCAGG	1 cut(s)	2905
SduI	GDGCHC	7 cut(s)	181, 312, 1345, 1590, 2433, 2453, 2473
SfaNI	GCATC	8 cut(s)	271, 541, 600, 1157, 1620, 2221, 2250, 2717
SfcI	CTRYAG	3 cut(s)	2264, 2315, 2901
Sfr303I	CCGCGG	2 cut(s)	2914, 2953
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	2 cut(s)	2914, 2953
SinI	GGWCC	5 cut(s)	33, 200, 506, 2626, 2744
SmaI	CCCGGG	1 cut(s)	2833
SmiMI	CAYNNNNRTG	3 cut(s)	532, 1790, 2426
SnaBI	TACGTA	1 cut(s)	2595
Sse8387I	CCTGCAGG	1 cut(s)	2905
SseBI	AGGCCT	1 cut(s)	410
SspI	AATATT	1 cut(s)	1889
SspMI	CTAG	8 cut(s)	222, 975, 1536, 1878, 1994, 2495, 2856, 2922
SstI	GAGCTC	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	8 cut(s)	39, 1237, 2052, 2206, 2651, 2830, 2831, 2866
StyI	CCWWGG	3 cut(s)	221, 1622, 1778
TaaI	ACNGT	8 cut(s)	334, 362, 369, 393, 1747, 1761, 1931, 2083
TaiI	ACGT	4 cut(s)	576, 2578, 2597, 2770
TatI	WGTACW	1 cut(s)	2008
TauI	GCSGC	2 cut(s)	1840, 2551
TfiI	GAWTC	9 cut(s)	114, 299, 464, 980, 1037, 1611, 1805, 1853, 2896
Tru1I	TTAA	9 cut(s)	189, 276, 357, 698, 782, 852, 966, 1811, 2103
Tru9I	TTAA	9 cut(s)	189, 276, 357, 698, 782, 852, 966, 1811, 2103
TscAI	CASTG	2 cut(s)	1864, 1936
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	8 cut(s)	1035, 1050, 1182, 1401, 2262, 2322, 2778, 2827
TspGWI	ACGGA	3 cut(s)	2622, 2812, 2859
TspMI	CCCGGG	1 cut(s)	2831
TspRI	CASTG	2 cut(s)	1864, 1936
Tth111I	GACNNNGTC	1 cut(s)	1759
Van91I	CCANNNNNTGG	2 cut(s)	166, 946
VpaK11BI	GGWCC	5 cut(s)	33, 200, 506, 2626, 2744
XapI	RAATTY	2 cut(s)	673, 1102
XbaI	TCTAGA	1 cut(s)	1993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1250
XmaI	CCCGGG	1 cut(s)	2831
XmaJI	CCTAGG	1 cut(s)	221
XspI	CTAG	8 cut(s)	222, 975, 1536, 1878, 1994, 2495, 2856, 2922
ZrmI	AGTACT	1 cut(s)	2010
Zsp2I	ATGCAT	1 cut(s)	2248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.