Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

29760181 .. 29762230

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGAGACGTGATACTGTACGTGGAGGAGGATTCATGCTCGGCAGTTTCGCTCTGCAGGATTTGCCATGAAGAAGAATTCGGAAGCTCCGATCATAAGACCATGGAAGCTCCCTGTGCATGCTCTGGAACTGTTAAGTTTGCACACAGAGATTGCATACAGAGGTGGTGCAACGAGAAAGGCAATACGACCTGCGAAATATGTCTCCAGAGCTATGAACCAGGATACACAGCACCACCGCCAAAAAAGACGCAGATAGATGACTCAGCAGTAACAATTAGAGATAGCGTGCAGGTTCCGAGAAGAGAGCAAGAGGAAGAGGAGGGCGCAGGAAGCCCAAGATATGGCTACTCTGCGTCTCAATGCTCGTCTGCGGCTGACAGAAGTGCATCTTATTGTCGATCTCTCACTCTCCTTTTTACGGTGGTGTTGCTGGTGAGGCATCTCTTTGTGGTGATTACCGGTACCGAAGAAGATTACCCCTTCACGCTTCTAACTGTGCTTATTCTAAGGTCTAGCGGGATTATCCTGCCAATGTACGTATTATTTCGAACAATCACAGCCATCCGAAACAGCATCCACCACCAGTATCATCGATATCATCGTTATCAGCAGCAAGACTCTGACTCTGAAGATGAGACCGATAGCGAAGACCTGGCTGACAATGAAGAAACTCAAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

229

Amino Acids

25.75

Weight (kDa)

4.82

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	19 - 68	1.4e-13	RING-variant domain
DUF3675	PF12428	74 - 186	2.3e-30	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	200, 283
Acc65I	GGTACC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	344
AciI	CCGC	3 cut(s)	239, 374, 519
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	3 cut(s)	20, 466, 539
AfiI	CCNNNNNNNGG	2 cut(s)	344, 421
AgeI	ACCGGT	1 cut(s)	461
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	220, 654
AluBI	AGCT	3 cut(s)	87, 110, 213
AluI	AGCT	3 cut(s)	87, 110, 213
Alw26I	GTCTC	3 cut(s)	209, 363, 632
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	1 cut(s)	77
AsiGI	ACCGGT	1 cut(s)	461
Asp718I	GGTACC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	448, 466
AsuII	TTCGAA	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	1 cut(s)	572
BciT130I	CCWGG	2 cut(s)	222, 656
BciVI	GTATCC	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	209, 363, 632
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	55
BfuAI	ACCTGC	2 cut(s)	200, 283
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	375, 614
BlsI	GCNGC	2 cut(s)	376, 615
Bme1390I	CCNGG	2 cut(s)	222, 656
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	297, 466
BmrFI	CCNGG	2 cut(s)	222, 656
BmsI	GCATC	3 cut(s)	398, 451, 585
BpiI	GAAGAC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	550
Bsa29I	ATCGAT	1 cut(s)	595
BsaAI	YACGTR	2 cut(s)	22, 541
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 421
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	222, 656
BseCI	ATCGAT	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	564, 576
BseLI	CCNNNNNNNGG	2 cut(s)	344, 421
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	41, 335
BseXI	GCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	464
BshTI	ACCGGT	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	344, 421
BsmAI	GTCTC	3 cut(s)	209, 363, 632
BsmBI	CGTCTC	1 cut(s)	363
Bso31I	GGTCTC	1 cut(s)	632
Bsp119I	TTCGAA	1 cut(s)	550
Bsp143I	GATC	2 cut(s)	91, 401
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	3 cut(s)	239, 374, 519
BspCNI	CTCAG	1 cut(s)	278
BspDI	ATCGAT	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	297, 466
BspMAI	CTGCAG	1 cut(s)	59
BspMI	ACCTGC	2 cut(s)	200, 283
BspT104I	TTCGAA	1 cut(s)	550
BspT107I	GGYRCC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	91, 401
BssT1I	CCWWGG	1 cut(s)	102
Bst2UI	CCWGG	2 cut(s)	222, 656
Bst4CI	ACNGT	5 cut(s)	18, 133, 424, 499, 682
Bst6I	CTCTTC	2 cut(s)	298, 312
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstBAI	YACGTR	2 cut(s)	22, 541
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	121, 290
BstDEI	CTNAG	2 cut(s)	265, 509
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	564, 576
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	94, 404
BstMAI	GTCTC	3 cut(s)	209, 363, 632
BstMBI	GATC	2 cut(s)	91, 401
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 116, 333, 439
BstNI	CCWGG	2 cut(s)	222, 656
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	220, 654
BstSFI	CTRYAG	1 cut(s)	55
BstSNI	TACGTA	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	657
Bsu15I	ATCGAT	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	595
BtgI	CCRYGG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	564, 576
BveI	ACCTGC	2 cut(s)	200, 283
Cac8I	GCNNGC	2 cut(s)	121, 290
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	595
CseI	GACGC	2 cut(s)	259, 345
Csp6I	GTAC	3 cut(s)	19, 465, 538
CspAI	ACCGGT	1 cut(s)	461
CviAII	CATG	4 cut(s)	36, 68, 103, 120
CviJI	RGCY	8 cut(s)	87, 110, 213, 336, 348, 377, 563, 659
CviKI_1	RGCY	8 cut(s)	87, 110, 213, 336, 348, 377, 563, 659
CviQI	GTAC	3 cut(s)	19, 465, 538
DdeI	CTNAG	2 cut(s)	265, 509
DpnI	GATC	2 cut(s)	93, 403
DpnII	GATC	2 cut(s)	91, 401
Eam1104I	CTCTTC	2 cut(s)	298, 312
EarI	CTCTTC	2 cut(s)	298, 312
Eco105I	TACGTA	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	632
Eco32I	GATATC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	220, 654
EcoRV	GATATC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	4 cut(s)	39, 71, 106, 123
FaiI	YATR	9 cut(s)	37, 69, 96, 104, 121, 158, 202, 216, 345
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FatI	CATG	4 cut(s)	35, 67, 102, 119
FauI	CCCGC	1 cut(s)	512
Fnu4HI	GCNGC	2 cut(s)	375, 614
FokI	GGATG	2 cut(s)	551, 563
Fsp4HI	GCNGC	2 cut(s)	375, 614
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	375, 614
GsuI	CTGGAG	1 cut(s)	191
HapII	CCGG	1 cut(s)	462
HgaI	GACGC	2 cut(s)	259, 345
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	39, 71, 106, 123
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	4 cut(s)	32, 263, 620, 626
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	2 cut(s)	448, 466
Hpy188I	TCNGA	6 cut(s)	83, 91, 300, 569, 625, 631
Hpy188III	TCNNGA	2 cut(s)	126, 208
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	5 cut(s)	18, 133, 424, 499, 682
HpyCH4IV	ACGT	3 cut(s)	9, 21, 540
HpyCH4V	TGCA	7 cut(s)	57, 119, 143, 156, 171, 292, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 116, 333, 439
HpyF3I	CTNAG	2 cut(s)	265, 509
HpySE526I	ACGT	3 cut(s)	9, 21, 540
Hsp92II	CATG	4 cut(s)	39, 71, 106, 123
HspAI	GCGC	1 cut(s)	327
KpnI	GGTACC	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	91, 401
LmnI	GCTCC	2 cut(s)	92, 115
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	3 cut(s)	398, 451, 585
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	3 cut(s)	9, 21, 540
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	93, 403
MboI	GATC	2 cut(s)	91, 401
MboII	GAAGA	9 cut(s)	83, 86, 315, 329, 482, 485, 644, 662, 680
MluCI	AATT	2 cut(s)	77, 276
MlyI	GAGTC	3 cut(s)	257, 614, 620
MnlI	CCTC	7 cut(s)	19, 22, 156, 307, 313, 316, 432
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	2 cut(s)	222, 656
MvaI	CCWGG	2 cut(s)	222, 656
MwoI	GCNNNNNNNGC	4 cut(s)	63, 116, 333, 439
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	91, 401
NlaIII	CATG	4 cut(s)	39, 71, 106, 123
NlaIV	GGNNCC	2 cut(s)	297, 466
NmeAIII	GCCGAG	1 cut(s)	20
NspI	RCATGY	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	550
PaeI	GCATGC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 601
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	376, 615
PleI	GAGTC	3 cut(s)	257, 614, 620
PpsI	GAGTC	3 cut(s)	257, 614, 620
Ppu21I	YACGTR	2 cut(s)	22, 541
Psp6I	CCWGG	2 cut(s)	220, 654
PspGI	CCWGG	2 cut(s)	220, 654
PspN4I	GGNNCC	2 cut(s)	297, 466
PstI	CTGCAG	1 cut(s)	59
RsaI	GTAC	3 cut(s)	20, 466, 539
RsaNI	GTAC	3 cut(s)	19, 465, 538
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	375, 614
Sau3AI	GATC	2 cut(s)	91, 401
SchI	GAGTC	3 cut(s)	257, 614, 620
ScrFI	CCNGG	2 cut(s)	222, 656
SfaNI	GCATC	3 cut(s)	398, 451, 585
SfcI	CTRYAG	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	550
SnaBI	TACGTA	1 cut(s)	541
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	77, 276
SsiI	CCGC	3 cut(s)	239, 374, 519
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	220, 654
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	5 cut(s)	18, 133, 424, 499, 682
TaiI	ACGT	3 cut(s)	12, 24, 543
TaqI	TCGA	3 cut(s)	400, 550, 595
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	2 cut(s)	77, 276
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseI	GCWGC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	24, 84, 231, 681
Van91I	CCANNNNNTGG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.