Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005723

Physical Location & Seq

Genomic Coordinates Reverse (-)

29954418 .. 29955206

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCAGATCACCAAAAGATTCATCCAGTACTTGATCGAGATGTTGAGGCACCACATGCAGCAGCTGAGGTACCCTTGGTACCAAGGGGAGCTTCTAAGTCGGATAGAAGTGATCCTGCCGATCAGCAGGGCAAGTATCCTCCCTTACAACGACGTACCTTTCCAGTGATGCACTCCCCACCACCCATGCACAAGAAGAGAAGTTGTTGCCGCAGGTGCCTCTGTTGGACTGTATGCCTGCTCGTGCTCCAAGTGGTGGTCATTGCGATCACTGGTGGAATTATATACCTCGTGTTCCGACCAAAGCTTCCAAAATATTCGGTGGACCAATTGCAAATAACCCAGTTCAATGTTAGCACTGATCAGACGAGCTTGTATGCTACTTTCGACGTGAACATCACCGCACGAAACCCCAACAAGAAGATCGGTATTTACTACGAAGGTGGCAGCCGCTTAAGCGTGTGGTATACACGCACTAAGCTTTGTGAAGGAGCTTTGCCAAAATTCTACCAGGGTCACCGCAACACCACGCAACTCCTGGTTCAGATGACAGGACAAAACCAAGATGCAAGCGGCCTGCTGACCGCTCTTCAACAACAGCAGCAACAGACGGGTAATGTTCCACTCACTCTCAGGGTCAGACAACCTGTAAAGATTAAACTCGGCAGCTTCAAGCTCCCAAAGATCTTCTTCGTGGTCAGGTGCAGGTTGGTAGTGGACAGTCTTTCGGAAAATAATGACATTACAATTCAAAGCAGTAGTTGCAAGTTCCGGGGGATTAGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010565 GO:0016020 GO:0019216 GO:0019222 GO:0019747 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043455 GO:0044424 GO:0044444 GO:0044464 GO:0045828 GO:0045834 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0062013 GO:0065007 GO:0071944 GO:0080090 GO:0097305 GO:1901700 GO:1902074 GO:1902930 GO:1902932

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

263

Amino Acids

29.56

Weight (kDa)

9.84

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	133 - 226	6.3e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65690 AT5G36970
fragaria_vesca	FvH4_5g39741 FvH4_5g39741
malus_domestica	MD09G1187500.v1.1
prunus_persica	Prupe.8G267700_v2.0.a1
pyrus_communis	pycom11g27770
rosa_chinensis	RchiOBHm_Chr7g0182611 RchiOBHm_Chr7g0242031
rosa_laevigata	RLG00000000514 RLG00000005116
rosa_multiflora	Rmu_co8132812.1_g000001 Rmu_co8258617.1_g000001 Rmu_sc0003559.1_g000022 Rmu_sc0005811.1_g000010 Rmu_sc0013953.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218260
rosa_rugosa	Rorug06G0448600 Rorug07G0349900
rosa_samantha	Rh7AG052400 Rh7AG504800 Rh7BG051600 Rh7BG476600 Rh7CG521200 Rh7DG051600 Rh7DG490300
rosa_wichuraiana	Rw7G004250 Rw7G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	204
Acc36I	ACCTGC	2 cut(s)	204, 696
Acc65I	GGTACC	2 cut(s)	70, 79
AccB1I	GGYRCC	4 cut(s)	49, 70, 79, 216
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	467
AciI	CCGC	6 cut(s)	211, 402, 451, 520, 573, 585
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	4 cut(s)	30, 72, 81, 157
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	349, 593, 673, 752
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	510, 537
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	8 cut(s)	65, 92, 307, 372, 481, 494, 669, 676
AluI	AGCT	8 cut(s)	65, 92, 307, 372, 481, 494, 669, 676
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	5 cut(s)	59, 62, 447, 601, 666
ApoI	RAATTY	1 cut(s)	503
Asp718I	GGTACC	2 cut(s)	70, 79
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	2 cut(s)	391, 509
AvaII	GGWCC	1 cut(s)	325
BanI	GGYRCC	4 cut(s)	49, 70, 79, 216
BauI	CACGAG	2 cut(s)	242, 290
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	5 cut(s)	71, 74, 459, 613, 678
BciT130I	CCWGG	2 cut(s)	512, 539
BciVI	GTATCC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	773
BfrI	CTTAAG	1 cut(s)	454
BfuAI	ACCTGC	2 cut(s)	204, 696
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	684
BisI	GCNGC	8 cut(s)	60, 63, 211, 448, 451, 574, 602, 667
BlsI	GCNGC	8 cut(s)	61, 64, 212, 449, 452, 575, 603, 668
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	3 cut(s)	512, 539, 773
Bme18I	GGWCC	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	4 cut(s)	51, 72, 81, 218
BmrFI	CCNGG	3 cut(s)	512, 539, 773
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	159, 556
BmuI	ACTGGG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	773
BsaJI	CCNNGG	4 cut(s)	75, 83, 511, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	4 cut(s)	26, 164, 277, 343
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	512, 539
BseDI	CCNNGG	4 cut(s)	75, 83, 511, 772
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	57, 646
BseNI	ACTGG	4 cut(s)	26, 164, 277, 343
BseXI	GCAGC	5 cut(s)	71, 74, 459, 613, 678
BsgI	GTGCAG	1 cut(s)	724
BshFI	GGCC	1 cut(s)	576
BshNI	GGYRCC	4 cut(s)	49, 70, 79, 216
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	772
BslI	CCNNNNNNNGG	1 cut(s)	256
BsnI	GGCC	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
BspACI	CCGC	6 cut(s)	211, 402, 451, 520, 573, 585
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	2 cut(s)	58, 645
BspLI	GGNNCC	4 cut(s)	51, 72, 81, 218
BspMI	ACCTGC	2 cut(s)	204, 696
BspPI	GGATC	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	594
BspT107I	GGYRCC	4 cut(s)	49, 70, 79, 216
BspTI	CTTAAG	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	4 cut(s)	26, 164, 277, 343
BssECI	CCNNGG	4 cut(s)	75, 83, 511, 772
BssMI	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
BssNAI	GTATAC	1 cut(s)	468
BssSI	CACGAG	2 cut(s)	242, 290
BssT1I	CCWWGG	2 cut(s)	75, 83
Bst1107I	GTATAC	1 cut(s)	468
Bst2BI	CACGAG	2 cut(s)	242, 290
Bst2UI	CCWGG	2 cut(s)	512, 539
Bst4CI	ACNGT	2 cut(s)	232, 722
Bst6I	CTCTTC	2 cut(s)	191, 594
BstAFI	CTTAAG	1 cut(s)	454
BstAPI	GCANNNNNTGC	2 cut(s)	56, 762
BstC8I	GCNNGC	3 cut(s)	239, 571, 578
BstDEI	CTNAG	4 cut(s)	66, 96, 477, 632
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	8 cut(s)	10, 37, 115, 124, 270, 364, 426, 687
BstMBI	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 216, 456, 762
BstNI	CCWGG	2 cut(s)	512, 539
BstNSI	RCATGY	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	510, 537, 771
BstV1I	GCAGC	5 cut(s)	71, 74, 459, 613, 678
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BstZ17I	GTATAC	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	576
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	3 cut(s)	171, 270, 357
BveI	ACCTGC	2 cut(s)	204, 696
Cac8I	GCNNGC	3 cut(s)	239, 571, 578
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	4 cut(s)	29, 71, 80, 156
CviAII	CATG	2 cut(s)	56, 187
CviQI	GTAC	4 cut(s)	29, 71, 80, 156
DdeI	CTNAG	4 cut(s)	66, 96, 477, 632
DpnI	GATC	8 cut(s)	9, 36, 114, 123, 269, 363, 425, 686
DpnII	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
Eam1104I	CTCTTC	2 cut(s)	191, 594
EarI	CTCTTC	2 cut(s)	191, 594
Eco130I	CCWWGG	2 cut(s)	75, 83
Eco47I	GGWCC	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	510, 537
EcoT14I	CCWWGG	2 cut(s)	75, 83
ErhI	CCWWGG	2 cut(s)	75, 83
FaeI	CATG	2 cut(s)	59, 190
FaiI	YATR	7 cut(s)	57, 188, 235, 284, 286, 378, 468
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 674, 706
FatI	CATG	2 cut(s)	55, 186
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	8 cut(s)	60, 63, 211, 448, 451, 574, 602, 667
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	8 cut(s)	60, 63, 211, 448, 451, 574, 602, 667
GluI	GCNGC	8 cut(s)	60, 63, 211, 448, 451, 574, 602, 667
HaeIII	GGCC	1 cut(s)	576
HapII	CCGG	1 cut(s)	772
Hin1II	CATG	2 cut(s)	59, 190
HindIII	AAGCTT	2 cut(s)	305, 479
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	2 cut(s)	391, 509
Hpy166II	GTNNAC	4 cut(s)	325, 394, 468, 718
Hpy188I	TCNGA	6 cut(s)	103, 299, 366, 546, 641, 730
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	4 cut(s)	325, 394, 468, 718
Hpy99I	CGWCG	2 cut(s)	156, 392
HpyAV	CCTTC	2 cut(s)	434, 482
HpyCH4III	ACNGT	2 cut(s)	232, 722
HpyCH4IV	ACGT	2 cut(s)	154, 390
HpyCH4V	TGCA	7 cut(s)	59, 172, 190, 334, 569, 705, 765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 216, 456, 762
HpyF3I	CTNAG	4 cut(s)	66, 96, 477, 632
HpySE526I	ACGT	2 cut(s)	154, 390
Hsp92II	CATG	2 cut(s)	59, 190
KpnI	GGTACC	2 cut(s)	74, 83
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	4 cut(s)	89, 252, 491, 681
Lsp1109I	GCAGC	5 cut(s)	71, 74, 459, 613, 678
LweI	GCATC	2 cut(s)	159, 556
MaeII	ACGT	2 cut(s)	154, 390
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	8 cut(s)	9, 36, 114, 123, 269, 363, 425, 686
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
MboII	GAAGA	5 cut(s)	208, 433, 581, 679, 682
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	279, 329, 503, 747
MmeI	TCCRAC	3 cut(s)	81, 206, 322
MnlI	CCTC	5 cut(s)	40, 61, 150, 230, 299
MseI	TTAA	2 cut(s)	455, 657
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	3 cut(s)	512, 539, 773
MunI	CAATTG	1 cut(s)	329
MvaI	CCWGG	2 cut(s)	512, 539
MwoI	GCNNNNNNNGC	4 cut(s)	56, 216, 456, 762
NciI	CCSGG	1 cut(s)	773
NdeII	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
NlaIII	CATG	2 cut(s)	59, 190
NlaIV	GGNNCC	4 cut(s)	51, 72, 81, 218
NmeAIII	GCCGAG	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	515
NspI	RCATGY	1 cut(s)	59
PaqCI	CACCTGC	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	8 cut(s)	61, 64, 212, 449, 452, 575, 603, 668
Psp6I	CCWGG	2 cut(s)	510, 537
PspEI	GGTNACC	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	510, 537
PspN4I	GGNNCC	4 cut(s)	51, 72, 81, 218
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	684
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	4 cut(s)	30, 72, 81, 157
RsaNI	GTAC	4 cut(s)	29, 71, 80, 156
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	455, 657
SatI	GCNGC	8 cut(s)	60, 63, 211, 448, 451, 574, 602, 667
Sau3AI	GATC	8 cut(s)	7, 34, 112, 121, 267, 361, 423, 684
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	30
ScrFI	CCNGG	3 cut(s)	512, 539, 773
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	159, 556
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	4 cut(s)	279, 329, 503, 747
SsiI	CCGC	6 cut(s)	211, 402, 451, 520, 573, 585
SspI	AATATT	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	510, 537, 771
StyI	CCWWGG	2 cut(s)	75, 83
TaaI	ACNGT	2 cut(s)	232, 722
TaiI	ACGT	2 cut(s)	157, 393
TaqI	TCGA	2 cut(s)	37, 387
TasI	AATT	4 cut(s)	279, 329, 503, 747
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	3 cut(s)	213, 453, 576
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	455, 657
Tru9I	TTAA	2 cut(s)	455, 657
TscAI	CASTG	3 cut(s)	171, 277, 364
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	5 cut(s)	59, 62, 447, 601, 666
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	3 cut(s)	171, 277, 364
Van91I	CCANNNNNTGG	1 cut(s)	256
Vha464I	CTTAAG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	467
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.