Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002387

Physical Location & Seq

Genomic Coordinates Reverse (-)

6456547 .. 6457957

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06340.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATCTTGCGGTGGAGCTCAGTAATAGCACTTTGGAAGCTCTCCCACAAAACTATGCTGAGCAGAAAGTTAAAAGTAGTGTCAGAATACTGGGTGATTTGGGAGAACTTGCTTCGGCGCAGAGCCTGGATAGTGGATACCTTCACGCTCATTTGCACAAATATTCTCGAACATCAACCTGACTTCCCGCCCGAGGTTGTACAGAAGCTTGTTGCACTGCGGGAAGGCATACCACAGAAGGATGCCAAAGAGGTGGTACAAGAGTGCAAAGAGATATACGGGAATTCTCTCGTCAATTCAAACCCCGTAAAGCCGGGTTTCGTTTTTCCGCGAGTGAAGTGCTTATCGAGTTCCAAGGGATCCATATGGCGGAAGTTAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec6

Protein Analysis

128

Amino Acids

14.79

Weight (kDa)

9.79

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71820 AT1G71820
fragaria_vesca	FvH4_6g24280 FvH4_6g24280 FvH4_6g24280 FvH4_6g24280 FvH4_6g24280
malus_domestica	MD14G1071700.v1.1
prunus_persica	Prupe.4G277400_v2.0.a1 Prupe.4G277400_v2.0.a1
pyrus_communis	pycom12g06340 pycom14g06140
rosa_chinensis	RchiOBHm_Chr1g0335041 RchiOBHm_Chr1g0335051 RchiOBHm_Chr1g0335061 RchiOBHm_Chr3g0482841
rosa_laevigata	RLG00000023322 RLG00000029399
rosa_multiflora	Rmu_co8266849.1_g000001 Rmu_sc0006746.1_g000005 Rmu_ssc0000175.1_g000029
rosa_roxburghii	Rroxscaffold_4G00316140 Rroxscaffold_4G00316250 Rroxscaffold_6G00398880 Rroxscaffold_7G00196430 Rroxscaffold_7G00196440
rosa_rugosa	Rorug01G0118700 Rorug01G0118900 Rorug03G0201400.1 Rorug03G0201500.1
rosa_samantha	Rh1AG141600 Rh1BG110100 Rh1BG110200 Rh1CG133600 Rh1DG146400 Rh3AG250300 Rh3BG286700 Rh3CG284200 Rh3DG279800
rosa_wichuraiana	Rw0G013950 Rw1G011760 Rw3G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	331
AciI	CCGC	5 cut(s)	10, 188, 220, 329, 370
AclWI	GGATC	2 cut(s)	354, 367
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	2 cut(s)	201, 258
AfiI	CCNNNNNNNGG	2 cut(s)	193, 369
AgsI	TTSAA	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	3 cut(s)	18, 40, 208
AluI	AGCT	3 cut(s)	18, 40, 208
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	354, 367
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	191
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BamHI	GGATCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	315
BfaI	CTAG	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	130
BlpI	GCTNAGC	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	127, 315
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	127, 315
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	192, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 369
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	192, 354
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	193, 369
BseMII	CTCAG	2 cut(s)	33, 50
BseNI	ACTGG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	193, 369
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	3, 359
Bsp1720I	GCTNAGC	1 cut(s)	59
BspACI	CCGC	5 cut(s)	10, 188, 220, 329, 370
BspCNI	CTCAG	2 cut(s)	32, 51
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	2 cut(s)	354, 367
BsrGI	TGTACA	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	192, 354
BssMI	GATC	2 cut(s)	3, 359
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	19, 59
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	6, 362
BstMBI	GATC	2 cut(s)	3, 359
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	125, 313
BstUI	CGCG	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	200, 257
CviJI	RGCY	5 cut(s)	18, 40, 125, 208, 313
CviKI_1	RGCY	5 cut(s)	18, 40, 125, 208, 313
CviQI	GTAC	2 cut(s)	200, 257
DdeI	CTNAG	2 cut(s)	19, 59
DpnI	GATC	2 cut(s)	5, 361
DpnII	GATC	2 cut(s)	3, 359
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	354
FaiI	YATR	5 cut(s)	56, 230, 277, 365, 367
FauI	CCCGC	2 cut(s)	195, 213
FauNDI	CATATG	1 cut(s)	365
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	382
GlaI	GCGC	1 cut(s)	119
HapII	CCGG	1 cut(s)	314
HhaI	GCGC	1 cut(s)	120
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	206
HpaI	GTTAAC	1 cut(s)	378
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	151, 218, 232
HpyCH4V	TGCA	3 cut(s)	156, 215, 267
HpyF3I	CTNAG	2 cut(s)	19, 59
HspAI	GCGC	1 cut(s)	118
KspAI	GTTAAC	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	3, 359
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	5 cut(s)	76, 112, 139, 192, 327
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	382
MalI	GATC	2 cut(s)	5, 361
MboI	GATC	2 cut(s)	3, 359
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	2 cut(s)	283, 295
MnlI	CCTC	2 cut(s)	187, 244
MseI	TTAA	2 cut(s)	71, 377
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	127, 315
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	331
NciI	CCSGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	2 cut(s)	3, 359
NlaIV	GGNNCC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	2 cut(s)	201, 258
RsaNI	GTAC	2 cut(s)	200, 257
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	71, 377
Sau3AI	GATC	2 cut(s)	3, 359
ScrFI	CCNGG	2 cut(s)	127, 315
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	8 cut(s)	20, 42, 143, 181, 198, 210, 255, 383
SfaNI	GCATC	1 cut(s)	232
Sse9I	AATT	2 cut(s)	283, 295
SsiI	CCGC	5 cut(s)	10, 188, 220, 329, 370
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	1 cut(s)	382
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	125, 313
StyI	CCWWGG	1 cut(s)	354
TaqI	TCGA	2 cut(s)	168, 347
TasI	AATT	2 cut(s)	283, 295
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	71, 377
Tru9I	TTAA	2 cut(s)	71, 377
TscAI	CASTG	1 cut(s)	222
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.