Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002387

Physical Location & Seq

Genomic Coordinates Forward (+)

39360113 .. 39360760

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTCGGCGAGGTTAACTTTGAAGATACATGCAAAGGTTTCCTAGAGGTTGCAAAGGAAGCTGTACATCAAACTGTCGGTGTTATTTTTGAAGATCCCGGAGTGCAGGATTTACTTGTGAAGCTTTATCGAAGGAAAAACTACATCAAGGAAGAGACCATTGAAAGGATGAGATTAGATGAAGAGAGCCTGGATACATTCACACCGATTTACACAAATACTCTCGAACATCAACCCGATTGTCCGCCCGATGTTGTTGAGAAGCTTGTTGCACCGCGAGAAGGCATACCGCGAAAGGATGCCAAGGAGGTTGTACAAGAGTGCAAAGAGATATATGAGAATTCTCGCGCCAATGGCAGGGTTTCCAATTTCAACATAAATCTTACTTGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec6

Protein Analysis

153

Amino Acids

17.54

Weight (kDa)

4.75

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71820 AT1G71820
fragaria_vesca	FvH4_6g24280 FvH4_6g24280 FvH4_6g24280 FvH4_6g24280 FvH4_6g24280
malus_domestica	MD14G1071700.v1.1
prunus_persica	Prupe.4G277400_v2.0.a1 Prupe.4G277400_v2.0.a1
pyrus_communis	pycom12g06340 pycom14g06140
rosa_chinensis	RchiOBHm_Chr1g0335041 RchiOBHm_Chr1g0335051 RchiOBHm_Chr1g0335061 RchiOBHm_Chr3g0482841
rosa_laevigata	RLG00000023322 RLG00000029399
rosa_multiflora	Rmu_co8266849.1_g000001 Rmu_sc0006746.1_g000005 Rmu_ssc0000175.1_g000029
rosa_roxburghii	Rroxscaffold_4G00316140 Rroxscaffold_4G00316250 Rroxscaffold_6G00398880 Rroxscaffold_7G00196430 Rroxscaffold_7G00196440
rosa_rugosa	Rorug01G0118700 Rorug01G0118900 Rorug03G0201400.1 Rorug03G0201500.1
rosa_samantha	Rh1AG141600 Rh1BG110100 Rh1BG110200 Rh1CG133600 Rh1DG146400 Rh3AG250300 Rh3BG286700 Rh3CG284200 Rh3DG279800
rosa_wichuraiana	Rw0G013950 Rw1G011760 Rw3G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	277, 292, 348
AciI	CCGC	5 cut(s)	245, 275, 290, 410, 453
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	2 cut(s)	66, 315
AfiI	CCNNNNNNNGG	3 cut(s)	165, 281, 357
AgsI	TTSAA	4 cut(s)	23, 92, 164, 373
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	3 cut(s)	62, 124, 265
AluI	AGCT	3 cut(s)	62, 124, 265
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	451
BccI	CCATC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	99, 191
BmrFI	CCNGG	2 cut(s)	99, 191
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 281, 357
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	174, 304
BseLI	CCNNNNNNNGG	3 cut(s)	165, 281, 357
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	3 cut(s)	277, 292, 348
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	165, 281, 357
BsmAI	GTCTC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	149
Bsp1407I	TGTACA	2 cut(s)	64, 313
Bsp143I	GATC	2 cut(s)	94, 391
BspACI	CCGC	5 cut(s)	245, 275, 290, 410, 453
BspFNI	CGCG	3 cut(s)	277, 292, 348
BspPI	GGATC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	149
BsrGI	TGTACA	2 cut(s)	64, 313
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	94, 391
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	147, 177
BstAUI	TGTACA	2 cut(s)	64, 313
BstF5I	GGATG	2 cut(s)	174, 304
BstFNI	CGCG	3 cut(s)	277, 292, 348
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	97, 394
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	94, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 354
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	97, 189
BstUI	CGCG	3 cut(s)	277, 292, 348
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	174, 304
CfoI	GCGC	1 cut(s)	350
CseI	GACGC	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	65, 314
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	5 cut(s)	62, 124, 189, 265, 436
CviKI_1	RGCY	5 cut(s)	62, 124, 189, 265, 436
CviQI	GTAC	2 cut(s)	65, 314
DpnI	GATC	2 cut(s)	96, 393
DpnII	GATC	2 cut(s)	94, 391
Eam1104I	CTCTTC	2 cut(s)	147, 177
EarI	CTCTTC	2 cut(s)	147, 177
EciI	GGCGGA	2 cut(s)	234, 425
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	33
FaiI	YATR	5 cut(s)	31, 287, 334, 336, 377
FatI	CATG	1 cut(s)	29
FauI	CCCGC	1 cut(s)	446
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	2 cut(s)	181, 311
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	1 cut(s)	451
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	122, 263
HinfI	GANTC	1 cut(s)	422
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	126, 275
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	33, 53, 106, 272, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 354
Hsp92II	CATG	1 cut(s)	33
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	94, 391
LpnPI	CCDG	5 cut(s)	92, 112, 176, 203, 343
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	44
MalI	GATC	2 cut(s)	96, 393
MboI	GATC	2 cut(s)	94, 391
MboII	GAAGA	5 cut(s)	35, 104, 164, 194, 456
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	3 cut(s)	340, 367, 457
MnlI	CCTC	3 cut(s)	4, 40, 301
MseI	TTAA	2 cut(s)	15, 440
MspA1I	CMGCKG	1 cut(s)	453
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	99, 191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	3 cut(s)	277, 292, 348
MwoI	GCNNNNNNNGC	2 cut(s)	59, 354
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	94, 391
NlaIII	CATG	1 cut(s)	33
NspI	RCATGY	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	2 cut(s)	66, 315
RsaNI	GTAC	2 cut(s)	65, 314
SaqAI	TTAA	2 cut(s)	15, 440
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	2 cut(s)	94, 391
ScrFI	CCNGG	2 cut(s)	99, 191
SetI	ASST	7 cut(s)	15, 40, 51, 64, 126, 267, 312
SfaNI	GCATC	1 cut(s)	289
Sse9I	AATT	3 cut(s)	340, 367, 457
SsiI	CCGC	5 cut(s)	245, 275, 290, 410, 453
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	97, 189
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	130, 225
TasI	AATT	3 cut(s)	340, 367, 457
TatI	WGTACW	2 cut(s)	64, 313
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	15, 440
Tru9I	TTAA	2 cut(s)	15, 440
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.