Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002387

Physical Location & Seq

Genomic Coordinates Reverse (-)

18960963 .. 18966113

Gene Structure 5151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG110100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATCCCCTAATGAATTCCTATGTTGAGAGAATGCAAGCTACGACAAGGAAATGGTACTTGAATATCTTGGAGGCTGATAAGGTACAGCCACCGAAGAAAACAGAAGATGGGAAGCTATATACACCAGCTGCTGTTGATTTATTCAGGATCCTTGGAGAGCAAGTGCAAATTGTTCGCGACAATAGCACGGATCTCATGCTCTACAGAATTGCTTTAGCAATTATCCAGGTAATGATTGACTTTCAAGCTGCTGAAAGGCAGAGACTTGAGGAACCTGCTTCAGAAGTTGGTTTGGAACCCTTATGTGCAATGATTAACAACAATCTGCGCTGCTATGATCTCGCTATGGAGCTAAGTAATAGCACTTTGGAAGCTCATCCACAAAATTATGCTGAGCAGGTTAACTTTGAAGAAAGGTTTCCTAGAGGTTGCAAAGGTTATTTGAAGGATGAAATGTGCTTTCTTTCTAGGAAGCTGTGCATCAAACTATGTAAAGATAAAAACTACATCAAGGAAGAGACCATTGAAAGGATGAGATTAGATGAAGAGGTTCTCATGGACTTTTTTAGGGAGTATTTAAGTGTTTCTAAAGTGGAAAGCAGAGTCACAATACTGAGTGATTTGAGAGAACTTGCTTCAGCAGAGAGCCTGGATACATTCACACTGATTTACACAAATATTCTCGAACATCAACCTGATTGTCCGCCTGAGGTTGTTGAGAAGCTTGTTGCACTGCGAGAAGGCATACCGCGAAAGGATGCCAAGGAGGTTGTACAAGAGTGCAAAGAGATATATGAGAATTCTCGCGCCAATGGAAACCCTGCCAAAGCAGGTTTTGTATTTCCAAGAGTTAAGTGCTTATCGTCTGCCAAGGCATCGATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec6

Protein Analysis

296

Amino Acids

34.08

Weight (kDa)

5.17

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec6	PF06046	2 - 136	9e-26	Exocyst complex component Sec6
Sec6	PF06046	163 - 252	1.1e-13	Exocyst complex component Sec6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71820 AT1G71820
fragaria_vesca	FvH4_6g24280 FvH4_6g24280 FvH4_6g24280 FvH4_6g24280 FvH4_6g24280
malus_domestica	MD14G1071700.v1.1
prunus_persica	Prupe.4G277400_v2.0.a1 Prupe.4G277400_v2.0.a1
pyrus_communis	pycom12g06340 pycom14g06140
rosa_chinensis	RchiOBHm_Chr1g0335041 RchiOBHm_Chr1g0335051 RchiOBHm_Chr1g0335061 RchiOBHm_Chr3g0482841
rosa_laevigata	RLG00000023322 RLG00000029399
rosa_multiflora	Rmu_co8266849.1_g000001 Rmu_sc0006746.1_g000005 Rmu_ssc0000175.1_g000029
rosa_roxburghii	Rroxscaffold_4G00316140 Rroxscaffold_4G00316250 Rroxscaffold_6G00398880 Rroxscaffold_7G00196430 Rroxscaffold_7G00196440
rosa_rugosa	Rorug01G0118700 Rorug01G0118900 Rorug03G0201400.1 Rorug03G0201500.1
rosa_samantha	Rh1AG141600 Rh1BG110100 Rh1BG110200 Rh1CG133600 Rh1DG146400 Rh3AG250300 Rh3BG286700 Rh3CG284200 Rh3DG279800
rosa_wichuraiana	Rw0G013950 Rw1G011760 Rw3G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	286, 391, 824
AccII	CGCG	3 cut(s)	180, 754, 810
AciI	CCGC	2 cut(s)	707, 752
AclWI	GGATC	4 cut(s)	12, 145, 158, 201
AcsI	RAATTY	2 cut(s)	16, 802
AcuI	CTGAAG	2 cut(s)	267, 624
AfaI	GTAC	3 cut(s)	59, 87, 777
AfiI	CCNNNNNNNGG	1 cut(s)	531
AgsI	TTSAA	5 cut(s)	64, 248, 413, 448, 530
AjnI	CCWGG	2 cut(s)	228, 651
AluBI	AGCT	8 cut(s)	41, 118, 131, 251, 355, 377, 478, 727
AluI	AGCT	8 cut(s)	41, 118, 131, 251, 355, 377, 478, 727
Alw26I	GTCTC	2 cut(s)	259, 515
AlwI	GGATC	4 cut(s)	12, 145, 158, 201
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	131, 251, 333
ApoI	RAATTY	2 cut(s)	16, 802
Asp700I	GAANNNNTTC	2 cut(s)	420, 552
AspLEI	GCGC	2 cut(s)	333, 812
AxyI	CCTNAGG	1 cut(s)	711
BamHI	GGATCC	2 cut(s)	4, 150
BbvI	GCAGC	3 cut(s)	118, 238, 320
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	230, 653
BciVI	GTATCC	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	259, 515
BfaI	CTAG	2 cut(s)	426, 471
BfmI	CTRYAG	1 cut(s)	205
BfuAI	ACCTGC	3 cut(s)	286, 391, 824
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	3 cut(s)	132, 252, 334
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	3 cut(s)	133, 253, 335
Bme1390I	CCNGG	2 cut(s)	230, 653
BmiI	GGNNCC	4 cut(s)	6, 152, 276, 300
BmrFI	CCNGG	2 cut(s)	230, 653
BmsI	GCATC	3 cut(s)	492, 751, 887
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	881
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	154, 765, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	230, 653
BseCI	ATCGAT	1 cut(s)	881
BseDI	CCNNGG	3 cut(s)	154, 765, 873
BseGI	GGATG	4 cut(s)	379, 457, 540, 766
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	387, 608, 702
BseXI	GCAGC	3 cut(s)	118, 238, 320
Bsh1236I	CGCG	3 cut(s)	180, 754, 810
BshVI	ATCGAT	1 cut(s)	881
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	2 cut(s)	259, 515
BsmI	GAATGC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	515
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	4 cut(s)	4, 150, 193, 340
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp68I	TCGCGA	1 cut(s)	180
BspACI	CCGC	2 cut(s)	707, 752
BspCNI	CTCAG	3 cut(s)	388, 609, 703
BspDI	ATCGAT	1 cut(s)	881
BspFNI	CGCG	3 cut(s)	180, 754, 810
BspLI	GGNNCC	4 cut(s)	6, 152, 276, 300
BspMI	ACCTGC	3 cut(s)	286, 391, 824
BspPI	GGATC	4 cut(s)	12, 145, 158, 201
BspTNI	GGTCTC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	775
BssECI	CCNNGG	3 cut(s)	154, 765, 873
BssMI	GATC	4 cut(s)	4, 150, 193, 340
BssT1I	CCWWGG	3 cut(s)	154, 765, 873
Bst2UI	CCWGG	2 cut(s)	230, 653
Bst6I	CTCTTC	2 cut(s)	513, 543
BstAUI	TGTACA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	356, 396, 617, 711
BstF5I	GGATG	4 cut(s)	379, 457, 540, 766
BstFNI	CGCG	3 cut(s)	180, 754, 810
BstHHI	GCGC	2 cut(s)	333, 812
BstKTI	GATC	4 cut(s)	7, 153, 196, 343
BstMAI	GTCTC	2 cut(s)	259, 515
BstMBI	GATC	4 cut(s)	4, 150, 193, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	2 cut(s)	230, 653
BstSCI	CCNGG	2 cut(s)	228, 651
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	3 cut(s)	180, 754, 810
BstV1I	GCAGC	3 cut(s)	118, 238, 320
BstX2I	RGATCY	3 cut(s)	4, 150, 193
BstYI	RGATCY	3 cut(s)	4, 150, 193
Bsu15I	ATCGAT	1 cut(s)	881
Bsu36I	CCTNAGG	1 cut(s)	711
BsuI	GTATCC	1 cut(s)	649
BsuTUI	ATCGAT	1 cut(s)	881
BtsCI	GGATG	4 cut(s)	379, 457, 540, 766
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	2 cut(s)	665, 734
BtuMI	TCGCGA	1 cut(s)	180
BveI	ACCTGC	3 cut(s)	286, 391, 824
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	2 cut(s)	333, 812
ClaI	ATCGAT	1 cut(s)	881
Csp6I	GTAC	3 cut(s)	58, 86, 776
CviAII	CATG	2 cut(s)	199, 559
CviQI	GTAC	3 cut(s)	58, 86, 776
DdeI	CTNAG	4 cut(s)	356, 396, 617, 711
DpnI	GATC	4 cut(s)	6, 152, 195, 342
DpnII	GATC	4 cut(s)	4, 150, 193, 340
Eam1104I	CTCTTC	2 cut(s)	513, 543
EarI	CTCTTC	2 cut(s)	513, 543
EciI	GGCGGA	1 cut(s)	696
Eco130I	CCWWGG	3 cut(s)	154, 765, 873
Eco31I	GGTCTC	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	267, 624
Eco81I	CCTNAGG	1 cut(s)	711
EcoRI	GAATTC	2 cut(s)	16, 802
EcoRII	CCWGG	2 cut(s)	228, 651
EcoT14I	CCWWGG	3 cut(s)	154, 765, 873
ErhI	CCWWGG	3 cut(s)	154, 765, 873
FaeI	CATG	2 cut(s)	202, 562
FatI	CATG	2 cut(s)	198, 558
Fnu4HI	GCNGC	3 cut(s)	132, 252, 334
FokI	GGATG	4 cut(s)	366, 464, 547, 773
Fsp4HI	GCNGC	3 cut(s)	132, 252, 334
FspBI	CTAG	2 cut(s)	426, 471
GlaI	GCGC	2 cut(s)	332, 811
GluI	GCNGC	3 cut(s)	132, 252, 334
HhaI	GCGC	2 cut(s)	333, 812
Hin1II	CATG	2 cut(s)	202, 562
Hin6I	GCGC	2 cut(s)	331, 810
HinP1I	GCGC	2 cut(s)	331, 810
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	1 cut(s)	606
HpaI	GTTAAC	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	3 cut(s)	148, 179, 686
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	442, 737
HpyCH4V	TGCA	7 cut(s)	37, 169, 311, 435, 483, 734, 786
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	4 cut(s)	356, 396, 617, 711
Hsp92II	CATG	2 cut(s)	202, 562
HspAI	GCGC	2 cut(s)	331, 810
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	4, 150, 193, 340
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	3 cut(s)	118, 238, 320
LweI	GCATC	3 cut(s)	492, 751, 887
MaeI	CTAG	2 cut(s)	426, 471
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	4 cut(s)	6, 152, 195, 342
MboI	GATC	4 cut(s)	4, 150, 193, 340
MboII	GAAGA	5 cut(s)	109, 119, 425, 530, 560
MflI	RGATCY	3 cut(s)	4, 150, 193
MluCI	AATT	6 cut(s)	16, 171, 210, 222, 388, 802
MlyI	GAGTC	1 cut(s)	615
MnlI	CCTC	6 cut(s)	67, 265, 422, 544, 706, 763
MroXI	GAANNNNTTC	2 cut(s)	420, 552
MseI	TTAA	4 cut(s)	318, 405, 581, 855
MspA1I	CMGCKG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	230, 653
Mva1269I	GAATGC	1 cut(s)	39
MvaI	CCWGG	2 cut(s)	230, 653
MvnI	CGCG	3 cut(s)	180, 754, 810
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	4 cut(s)	4, 150, 193, 340
NlaIII	CATG	2 cut(s)	202, 562
NlaIV	GGNNCC	4 cut(s)	6, 152, 276, 300
NmuCI	GTSAC	1 cut(s)	607
NruI	TCGCGA	1 cut(s)	180
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	420, 552
PkrI	GCNGC	3 cut(s)	133, 253, 335
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	228, 651
PspGI	CCWGG	2 cut(s)	228, 651
PspN4I	GGNNCC	4 cut(s)	6, 152, 276, 300
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	3 cut(s)	4, 150, 193
PvuII	CAGCTG	1 cut(s)	131
RruI	TCGCGA	1 cut(s)	180
RsaI	GTAC	3 cut(s)	59, 87, 777
RsaNI	GTAC	3 cut(s)	58, 86, 776
SaqAI	TTAA	4 cut(s)	318, 405, 581, 855
SatI	GCNGC	3 cut(s)	132, 252, 334
Sau3AI	GATC	4 cut(s)	4, 150, 193, 340
SchI	GAGTC	1 cut(s)	615
ScrFI	CCNGG	2 cut(s)	230, 653
SfaNI	GCATC	3 cut(s)	492, 751, 887
SfcI	CTRYAG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	16, 171, 210, 222, 388, 802
SsiI	CCGC	2 cut(s)	707, 752
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	2 cut(s)	426, 471
StyD4I	CCNGG	2 cut(s)	228, 651
StyI	CCWWGG	3 cut(s)	154, 765, 873
TaqI	TCGA	2 cut(s)	687, 881
TasI	AATT	6 cut(s)	16, 171, 210, 222, 388, 802
TatI	WGTACW	1 cut(s)	775
Tru1I	TTAA	4 cut(s)	318, 405, 581, 855
Tru9I	TTAA	4 cut(s)	318, 405, 581, 855
TscAI	CASTG	2 cut(s)	672, 741
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	3 cut(s)	131, 251, 333
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	29, 468, 561
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	672, 741
XapI	RAATTY	2 cut(s)	16, 802
XmnI	GAANNNNTTC	2 cut(s)	420, 552
XspI	CTAG	2 cut(s)	426, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.