Rh1BG110200

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002387
Physical Location & Seq
Reverse (-)
18968004 .. 18984111
16108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG110200.1

Sequence Viewer

Length: 1209 bp
ATGGACCTGATCGAAACTCTGTTTTCCGACGACAGCCGGATGTGGAATTGTCGGATTTTGAAGCTCTCCTCTTGCTGGTCAAGATCTTCAAAAAATGAGAGTACTGCTGAGTCTATTCTAACTAATACTGTGCCTTCGGTTTCATCTGGTTCCAGTGTTCCATCTCATTCTGAAAGGTCTCAGATTACTGGATCTGCTTCAGCGGTTCGCGAGGTTGCGAAGCTGTTGCCTCTGCCGGACCTCCTTCAGTCTATCGCTTCCATTAAGGCCGATTACATTGCTCGCCAACAGGCAAATGATGCACAACTTAGTACAATGGTTGCCGAGCAGGTAGAACAAGCACAAGCTGGGCTGGAATCCCTGTCCTTATCTCAAAAATCAATAAACCAACTCCGTGACAACTTTGTTTCTATTGAAAAGTTATGTCAAGAATGCCAAACTTTGATTGAAAACCATGATAAGATAAAGCTTCTCAGCAATGCGAGGAATAACTTGAACGCAACCTTAAAGGATGTCGAGGGTATGATGTCAATCTCTGTTGAAGCCTCTGAGGCTCGGGATTCTTTGAGTGATGATGAAGAACTTATTAATACTTATGAGAGGTTAACAGCTCTTGATGGAAAGCGGAGGTTTGCATTAGCAGCTGCAGGATCCCACAAGGAAGAGGTTGGCAGGCTAAGGGAATATTTTGAAGATGTTGATAGGACCTGGGAGACATTTGAGAAGACACTATGGTGCCACATTTCCAACTTCTATAATCTTTCCAAAGAAAGCCCGCAAACTCTGGTGCGCACTTTAAGAGTTGTTGAAATGCAAGAAATCCTTGACCAACAACTTGCTGAAGAAGCAGCTGAGGCTGAAGGAGGTGGTGCTATGGCATCAATTGCCAATCCTCGTAGAACTGCCAAAAAAACTACCACAGCAATAGCTTCTTCGAGAAATATGACACAGCAGAAACTGAATATACAAGGCAAAGGCTACAAGGACAAATGCTATGATCAAATTAGGAAGACTGTTGAAGGACGATTCAACAGGCTACTGACAGAGCTTTGTTTCGAGGATCTTAAAGCAGCACTAGAGGAAGCTCGAACAATTGGAGAAGAGCTTGGAGATATATACGACCATGTAGCCCCTTGTTTTCCCCCCAGATATGAAATATTCCAACTCATGGTCAATCTGTATACCGAGAGATTTGTTCAAATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

402

Amino Acids

45.23

Weight (kDa)

5.12

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec6 PF06046 230 - 402 2.3e-32 Exocyst complex component Sec6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 791
Acc36I ACCTGC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 735
AccB7I CCANNNNNTGG 1 cut(s) 1168
AccI GTMKAC 1 cut(s) 1181
AccII CGCG 1 cut(s) 210
AciI CCGC 3 cut(s) 203, 625, 776
AclWI GGATC 4 cut(s) 199, 645, 658, 1068
AcuI CTGAAG 4 cut(s) 183, 230, 861, 879
AfaI GTAC 2 cut(s) 103, 313
AfiI CCNNNNNNNGG 2 cut(s) 75, 1168
AjnI CCWGG 1 cut(s) 707
AleI CACNNNNGTG 1 cut(s) 733
Alw26I GTCTC 2 cut(s) 183, 707
AlwI GGATC 4 cut(s) 199, 645, 658, 1068
AlwNI CAGNNNCTG 1 cut(s) 958
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 4 cut(s) 641, 644, 848, 1070
AseI ATTAAT 1 cut(s) 588
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 3 cut(s) 4, 238, 705
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 3 cut(s) 4, 238, 705
BamHI GGATCC 1 cut(s) 650
BanI GGYRCC 1 cut(s) 735
BbsI GAAGAC 2 cut(s) 731, 1016
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 4 cut(s) 631, 653, 860, 1082
BccI CCATC 2 cut(s) 169, 611
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 260, 294
BciT130I CCWGG 1 cut(s) 709
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 2 cut(s) 183, 707
BfaI CTAG 1 cut(s) 1076
BfmI CTRYAG 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 319
BglI GCCNNNNNGGC 1 cut(s) 551
BglII AGATCT 1 cut(s) 83
BisI GCNGC 4 cut(s) 642, 645, 849, 1071
BlsI GCNGC 4 cut(s) 643, 646, 850, 1072
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 709
Bme18I GGWCC 3 cut(s) 4, 238, 705
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 3 cut(s) 4, 238, 705
BmiI GGNNCC 3 cut(s) 151, 652, 737
BmrFI CCNGG 1 cut(s) 709
BmsI GCATC 2 cut(s) 289, 887
BpiI GAAGAC 2 cut(s) 731, 1016
Bpu10I CCTNAGC 2 cut(s) 677, 852
BsaBI GATNNNNATC 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 1168
Bse1I ACTGG 2 cut(s) 153, 193
Bse3DI GCAATG 2 cut(s) 276, 484
Bse8I GATNNNNATC 1 cut(s) 530
BseBI CCWGG 1 cut(s) 709
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 2 cut(s) 45, 517
BseJI GATNNNNATC 1 cut(s) 530
BseLI CCNNNNNNNGG 2 cut(s) 75, 1168
BseMI GCAATG 2 cut(s) 276, 484
BseMII CTCAG 5 cut(s) 99, 194, 487, 540, 843
BseNI ACTGG 2 cut(s) 153, 193
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 4 cut(s) 631, 653, 860, 1082
BseYI CCCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 735
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 2 cut(s) 37, 236
BslI CCNNNNNNNGG 2 cut(s) 75, 1168
BsmAI GTCTC 2 cut(s) 183, 707
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 555
Bsp143I GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 3 cut(s) 203, 625, 776
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 5 cut(s) 100, 193, 486, 541, 844
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 3 cut(s) 151, 652, 737
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 4 cut(s) 199, 645, 658, 1068
BspQI GCTCTTC 1 cut(s) 1095
BspT107I GGYRCC 1 cut(s) 735
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 276, 484
BsrI ACTGG 2 cut(s) 153, 193
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
BssNAI GTATAC 1 cut(s) 1182
Bst1107I GTATAC 1 cut(s) 1182
Bst2UI CCWGG 1 cut(s) 709
Bst4CI ACNGT 2 cut(s) 130, 1015
Bst6I CTCTTC 2 cut(s) 657, 1095
BstAPI GCANNNNNTGC 2 cut(s) 299, 884
BstC8I GCNNGC 3 cut(s) 283, 674, 776
BstDEI CTNAG 7 cut(s) 108, 180, 308, 473, 549, 677, 852
BstF5I GGATG 2 cut(s) 45, 517
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 6 cut(s) 12, 86, 194, 653, 1000, 1063
BstMAI GTCTC 2 cut(s) 183, 707
BstMBI GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
BstMWI GCNNNNNNNGC 6 cut(s) 299, 551, 641, 845, 854, 884
BstNI CCWGG 1 cut(s) 709
BstSCI CCNGG 1 cut(s) 707
BstSFI CTRYAG 1 cut(s) 645
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 4 cut(s) 631, 653, 860, 1082
BstV2I GAAGAC 2 cut(s) 731, 1016
BstX2I RGATCY 4 cut(s) 83, 191, 650, 1060
BstYI RGATCY 4 cut(s) 83, 191, 650, 1060
BstZ17I GTATAC 1 cut(s) 1182
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 2 cut(s) 45, 517
BtsIMutI CAGTG 1 cut(s) 160
BtuMI TCGCGA 1 cut(s) 210
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 3 cut(s) 283, 674, 776
CaiI CAGNNNCTG 1 cut(s) 958
CfoI GCGC 1 cut(s) 792
Cfr13I GGNCC 3 cut(s) 4, 238, 705
Csp6I GTAC 2 cut(s) 102, 312
CviAII CATG 3 cut(s) 455, 1124, 1168
CviQI GTAC 2 cut(s) 102, 312
DdeI CTNAG 7 cut(s) 108, 180, 308, 473, 549, 677, 852
DpnI GATC 6 cut(s) 11, 85, 193, 652, 999, 1062
DpnII GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
Eam1104I CTCTTC 2 cut(s) 657, 1095
EarI CTCTTC 2 cut(s) 657, 1095
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 3 cut(s) 4, 238, 705
Eco57I CTGAAG 4 cut(s) 183, 230, 861, 879
Eco88I CYCGRG 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 705
EcoRII CCWGG 1 cut(s) 707
FaeI CATG 3 cut(s) 458, 1127, 1171
FalI AAGNNNNNCTT 2 cut(s) 807, 839
FatI CATG 3 cut(s) 454, 1123, 1167
FauI CCCGC 1 cut(s) 783
FbaI TGATCA 1 cut(s) 997
FblI GTMKAC 1 cut(s) 1181
Fnu4HI GCNGC 4 cut(s) 642, 645, 849, 1071
FokI GGATG 2 cut(s) 52, 524
Fsp4HI GCNGC 4 cut(s) 642, 645, 849, 1071
FspAI RTGCGCAY 1 cut(s) 791
FspBI CTAG 1 cut(s) 1076
FspI TGCGCA 1 cut(s) 791
GlaI GCGC 1 cut(s) 791
GluI GCNGC 4 cut(s) 642, 645, 849, 1071
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 269
HapII CCGG 2 cut(s) 37, 236
HhaI GCGC 1 cut(s) 792
Hin1II CATG 3 cut(s) 458, 1127, 1171
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 4 cut(s) 110, 356, 560, 1026
HpaI GTTAAC 1 cut(s) 606
HpaII CCGG 2 cut(s) 37, 236
Hpy166II GTNNAC 2 cut(s) 606, 1182
Hpy188I TCNGA 5 cut(s) 28, 54, 172, 183, 550
Hpy188III TCNNGA 6 cut(s) 81, 209, 428, 557, 614, 936
Hpy8I GTNNAC 2 cut(s) 606, 1182
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 144, 254, 854, 1013
HpyCH4III ACNGT 2 cut(s) 130, 1015
HpyCH4V TGCA 4 cut(s) 302, 635, 647, 814
HpyF10VI GCNNNNNNNGC 6 cut(s) 299, 551, 641, 845, 854, 884
HpyF3I CTNAG 7 cut(s) 108, 180, 308, 473, 549, 677, 852
Hsp92II CATG 3 cut(s) 458, 1127, 1171
HspAI GCGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 997
KspAI GTTAAC 1 cut(s) 606
Kzo9I GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
LguI GCTCTTC 1 cut(s) 1095
Lsp1109I GCAGC 4 cut(s) 631, 653, 860, 1082
LweI GCATC 2 cut(s) 289, 887
MaeI CTAG 1 cut(s) 1076
MaeIII GTNAC 1 cut(s) 395
MalI GATC 6 cut(s) 11, 85, 193, 652, 999, 1062
MboI GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
MboII GAAGA 9 cut(s) 78, 590, 674, 704, 736, 854, 924, 1021, 1112
MfeI CAATTG 2 cut(s) 882, 1092
MflI RGATCY 4 cut(s) 83, 191, 650, 1060
MluCI AATT 4 cut(s) 46, 882, 1002, 1092
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 4 cut(s) 32, 51, 771, 1186
MseI TTAA 6 cut(s) 264, 506, 588, 605, 797, 1065
MslI CAYNNNNRTG 1 cut(s) 733
MspA1I CMGCKG 3 cut(s) 203, 644, 851
MspI CCGG 2 cut(s) 37, 236
MspR9I CCNGG 1 cut(s) 709
MunI CAATTG 2 cut(s) 882, 1092
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 709
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 6 cut(s) 299, 551, 641, 845, 854, 884
NdeII GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
NlaIII CATG 3 cut(s) 458, 1127, 1171
NlaIV GGNNCC 3 cut(s) 151, 652, 737
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 395
NruI TCGCGA 1 cut(s) 210
NsbI TGCGCA 1 cut(s) 791
OliI CACNNNNGTG 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 1095
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 356, 560, 1026
PflMI CCANNNNNTGG 1 cut(s) 1168
PkrI GCNGC 4 cut(s) 643, 646, 850, 1072
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 705
PshBI ATTAAT 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 707
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 707
PspN4I GGNNCC 3 cut(s) 151, 652, 737
PspPI GGNCC 3 cut(s) 4, 238, 705
PspPPI RGGWCCY 1 cut(s) 705
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 958
PsuI RGATCY 4 cut(s) 83, 191, 650, 1060
PvuII CAGCTG 2 cut(s) 644, 851
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 2 cut(s) 103, 313
RsaNI GTAC 2 cut(s) 102, 312
RseI CAYNNNNRTG 1 cut(s) 733
SapI GCTCTTC 1 cut(s) 1095
SaqAI TTAA 6 cut(s) 264, 506, 588, 605, 797, 1065
SatI GCNGC 4 cut(s) 642, 645, 849, 1071
Sau3AI GATC 6 cut(s) 9, 83, 191, 650, 997, 1060
Sau96I GGNCC 3 cut(s) 4, 238, 705
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 709
SfaNI GCATC 2 cut(s) 289, 887
SfcI CTRYAG 1 cut(s) 645
SinI GGWCC 3 cut(s) 4, 238, 705
SmiMI CAYNNNNRTG 1 cut(s) 733
Sse9I AATT 4 cut(s) 46, 882, 1002, 1092
SsiI CCGC 3 cut(s) 203, 625, 776
SspI AATATT 2 cut(s) 686, 1158
SspMI CTAG 1 cut(s) 1076
StyD4I CCNGG 1 cut(s) 707
TaaI ACNGT 2 cut(s) 130, 1015
TaqI TCGA 5 cut(s) 12, 516, 935, 1056, 1087
TasI AATT 4 cut(s) 46, 882, 1002, 1092
TatI WGTACW 2 cut(s) 101, 311
TfiI GAWTC 3 cut(s) 356, 560, 1026
Tru1I TTAA 6 cut(s) 264, 506, 588, 605, 797, 1065
Tru9I TTAA 6 cut(s) 264, 506, 588, 605, 797, 1065
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 4 cut(s) 641, 644, 848, 1070
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 132, 591, 1167
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 1 cut(s) 160
Van91I CCANNNNNTGG 1 cut(s) 1168
VpaK11BI GGWCC 3 cut(s) 4, 238, 705
VspI ATTAAT 1 cut(s) 588
XmiI GTMKAC 1 cut(s) 1181
XspI CTAG 1 cut(s) 1076
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.