RchiOBHm_Chr1g0335051

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002387
Physical Location & Seq
Reverse (-)
27258102 .. 27259849
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56373

Sequence Viewer

Length: 462 bp
ATGGTCAATCTGTATACCGAGAGATTTGTTCAAATGCTTCGACTCCTCAGTGACAGGGCAAATGAAATGACGAACATAGAGATCTTAAAAGTAACTGGTTGGGTATTTGAATACCAAGAAAACCTGATTGGGCTTGGTGTCGATGAATCTCTTGCTCAAGTATGTTCTGAGAGTGGTTCCATGGATCCCCTAATGAATTCCTATGTGGAGAGAATGCAAGCTACGACAAGGAAATGGTACTTGAATATCTTGGAGGCTGATAAGGTACAACCACCGAAGAAAACAGAAGATGGGAAGCTATATACACCAGCTGCTGTTGATTTATTCAGGATCCTTGGAGAGCAAGTGCAAATTGTTCGCGACAATAGCACGGATCTCATGCTTTACAGAATTGCTGTAGCAATTATCCAGGTTCTTTTGGTTTTGGCTGTCATAGAAATAAATACTGAAGTATCACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

153

Amino Acids

17.46

Weight (kDa)

4.62

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec6 PF06046 1 - 139 3.3e-23 Exocyst complex component Sec6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 14
AccII CGCG 1 cut(s) 360
AclWI GGATC 5 cut(s) 179, 192, 325, 338, 381
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 2 cut(s) 239, 267
AgsI TTSAA 3 cut(s) 32, 110, 244
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 3 cut(s) 221, 298, 311
AluI AGCT 3 cut(s) 221, 298, 311
AlwI GGATC 5 cut(s) 179, 192, 325, 338, 381
AlwNI CAGNNNCTG 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 196
BaeI ACNNNNGTAYC 1 cut(s) 435
BamHI GGATCC 2 cut(s) 184, 330
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 1 cut(s) 410
BfmI CTRYAG 2 cut(s) 396, 458
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 410
BmiI GGNNCC 3 cut(s) 178, 186, 332
BmrFI CCNGG 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 180, 334
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 180, 334
BseMII CTCAG 2 cut(s) 61, 159
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 360
BsmI GAATGC 1 cut(s) 219
Bsp143I GATC 4 cut(s) 81, 184, 330, 373
Bsp19I CCATGG 1 cut(s) 180
Bsp68I TCGCGA 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 60, 160
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 178, 186, 332
BspPI GGATC 5 cut(s) 179, 192, 325, 338, 381
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 180, 334
BssMI GATC 4 cut(s) 81, 184, 330, 373
BssNAI GTATAC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 180, 334
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 47, 168
BstDSI CCRYGG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 4 cut(s) 84, 187, 333, 376
BstMBI GATC 4 cut(s) 81, 184, 330, 373
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 2 cut(s) 396, 458
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 4 cut(s) 81, 184, 330, 373
BstYI RGATCY 4 cut(s) 81, 184, 330, 373
BstZ17I GTATAC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 55
BtuMI TCGCGA 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 314
Csp6I GTAC 2 cut(s) 238, 266
CviAII CATG 2 cut(s) 181, 379
CviJI RGCY 6 cut(s) 133, 221, 257, 298, 311, 428
CviKI_1 RGCY 6 cut(s) 133, 221, 257, 298, 311, 428
CviQI GTAC 2 cut(s) 238, 266
DdeI CTNAG 2 cut(s) 47, 168
DpnI GATC 4 cut(s) 83, 186, 332, 375
DpnII GATC 4 cut(s) 81, 184, 330, 373
Eco130I CCWWGG 2 cut(s) 180, 334
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 2 cut(s) 180, 334
ErhI CCWWGG 2 cut(s) 180, 334
FaeI CATG 2 cut(s) 184, 382
FatI CATG 2 cut(s) 180, 378
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
Hin1II CATG 2 cut(s) 184, 382
HinfI GANTC 2 cut(s) 42, 146
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 328, 359
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 217, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 2 cut(s) 47, 168
Hsp92II CATG 2 cut(s) 184, 382
Kzo9I GATC 4 cut(s) 81, 184, 330, 373
LpnPI CCDG 7 cut(s) 40, 81, 137, 313, 321, 395, 422
Lsp1109I GCAGC 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 50, 91
MalI GATC 4 cut(s) 83, 186, 332, 375
MboI GATC 4 cut(s) 81, 184, 330, 373
MboII GAAGA 2 cut(s) 289, 299
MflI RGATCY 4 cut(s) 81, 184, 330, 373
MluCI AATT 4 cut(s) 196, 351, 390, 402
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 2 cut(s) 56, 247
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 366
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 81, 184, 330, 373
NlaIII CATG 2 cut(s) 184, 382
NlaIV GGNNCC 3 cut(s) 178, 186, 332
NmuCI GTSAC 1 cut(s) 50
NruI TCGCGA 1 cut(s) 360
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 178, 186, 332
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 4 cut(s) 81, 184, 330, 373
PvuII CAGCTG 1 cut(s) 311
RruI TCGCGA 1 cut(s) 360
RsaI GTAC 2 cut(s) 239, 267
RsaNI GTAC 2 cut(s) 238, 266
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 4 cut(s) 81, 184, 330, 373
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 410
SetI ASST 6 cut(s) 126, 223, 267, 300, 313, 414
SfcI CTRYAG 2 cut(s) 396, 458
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 4 cut(s) 196, 351, 390, 402
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 2 cut(s) 180, 334
TaqI TCGA 2 cut(s) 40, 141
TasI AATT 4 cut(s) 196, 351, 390, 402
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 78, 159, 209
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.