Rmu_co8266849.1_g000001

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8266849.1
OG0002387
Physical Location & Seq
Reverse (-)
1 .. 802
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8266849.1_g000001.1.cds

Sequence Viewer

Length: 338 bp
atgcaagaaatccttgactatcaacttgctgaagaagcagctgaggccgagggaggcggtgccatggcatcaattgccaatcctcgtagaacttccaaaaaaactaccacagcaatagcttcttcgagaaatctgacgcagcagaaactgaatgtacaaggcaaaggctacaaggacaaatgctatgagcaaattaggaagactgttgaaggacgattcaacaagctactgacagagctttgttatgaggatcttaaagcagcactagaggaagctcgagcgattggagaagagcttggagatatatacgaccatgtagccccttgttttccccccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

112

Amino Acids

12.41

Weight (kDa)

5.23

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 156
AgsI TTSAA 2 cut(s) 209, 220
AluBI AGCT 6 cut(s) 41, 119, 226, 238, 275, 295
AluI AGCT 6 cut(s) 41, 119, 226, 238, 275, 295
AlwI GGATC 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 38, 139, 260
AvaI CYCGRG 1 cut(s) 276
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 50, 151, 272
BfaI CTAG 1 cut(s) 266
BisI GCNGC 3 cut(s) 39, 140, 261
BlsI GCNGC 3 cut(s) 40, 141, 262
BmeT110I CYCGRG 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 48, 63
BseDI CCNNGG 2 cut(s) 48, 63
BseMII CTCAG 1 cut(s) 33
BseXI GCAGC 3 cut(s) 50, 151, 272
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 276
BsnI GGCC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 276
Bsp1407I TGTACA 1 cut(s) 154
Bsp143I GATC 1 cut(s) 250
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 258
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 48, 63
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 285
BstAPI GCANNNNNTGC 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 35, 44, 74
BstV1I GCAGC 3 cut(s) 50, 151, 272
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 148
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 155
CviAII CATG 2 cut(s) 64, 314
CviJI RGCY 9 cut(s) 41, 47, 119, 168, 226, 238, 275, 295, 320
CviKI_1 RGCY 9 cut(s) 41, 47, 119, 168, 226, 238, 275, 295, 320
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 67, 317
FaiI YATR 6 cut(s) 65, 186, 246, 305, 307, 315
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 2 cut(s) 63, 313
Fnu4HI GCNGC 3 cut(s) 39, 140, 261
Fsp4HI GCNGC 3 cut(s) 39, 140, 261
FspBI CTAG 1 cut(s) 266
GluI GCNGC 3 cut(s) 39, 140, 261
HaeIII GGCC 1 cut(s) 47
HgaI GACGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 67, 317
HinfI GANTC 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 44, 74
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 2 cut(s) 67, 317
Kzo9I GATC 1 cut(s) 250
LguI GCTCTTC 1 cut(s) 285
Lsp1109I GCAGC 3 cut(s) 50, 151, 272
LweI GCATC 1 cut(s) 77
MaeI CTAG 1 cut(s) 266
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 4 cut(s) 44, 114, 211, 302
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 250
MluCI AATT 2 cut(s) 72, 192
MnlI CCTC 6 cut(s) 37, 43, 47, 93, 241, 262
MseI TTAA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 41
MunI CAATTG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 35, 44, 74
NcoI CCATGG 1 cut(s) 63
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 67, 317
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 3 cut(s) 40, 141, 262
PspN4I GGNNCC 1 cut(s) 61
PspXI VCTCGAGB 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 39, 140, 261
Sau3AI GATC 1 cut(s) 250
SetI ASST 6 cut(s) 43, 121, 228, 240, 277, 297
SfaNI GCATC 1 cut(s) 77
Sfr274I CTCGAG 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 2 cut(s) 72, 192
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 125, 277
TasI AATT 2 cut(s) 72, 192
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 3 cut(s) 38, 139, 260
XhoI CTCGAG 1 cut(s) 276
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.