RLG00000029399

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002387
Physical Location & Seq
Forward (+)
38084419 .. 38088921
4503 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029399

Sequence Viewer

Length: 855 bp
ATGATGGTGGAGGATCTTGGTGGAAGCCAAGGAAGCTCTTGCCTCTGCCAGCCGGACCTCCTTCAGTCTATCGCTTCCATTAAGGCCGATTACATTGCTCGCCAACAGGCAAATGATGCACAACTTAGTACAATGGTTGCCGAGCAGGTAGAACAAGCGCAAGCTGGGCTGGAATCCCTGTCCTTAACTCAAAAATCAATAAACCAACTCCGTGAAAACTTTGTTTCTATTGAAAAGCTATGTCAAAAATGCCAAACTTTGATTGAAAACCATGATAAGATAAAGCTTCTCACCAATGCGAGGAATAACTTGAACACAACCTTAGAGGATGTTGAGGGTTTGATGTCAATCTCTGTTGAAGCCTCTGAGGCTCGGGATTCTTTGAGTGATGATAAAGAACTCATTAATACTTGTGAGAGGTTAACCGCTCTTGATGGAAAGCAGAGGTTTGCATTAGCCGCTGCAGGATCCCAGAAGGAAGAGGTTGGCAGGCGAAGGAAATATTTTGAAGATGTTGATAGGACCTGGGAGACATTCGAGAAGACGTTATGGTGCTACACTTCCAACTTCTATAATCTTTCCGAAGAAAGCCCGCAAACTCTGGTGCGTGCTTTAAGAGTTGTTGAAATGCAAGAAATCCTTGATCAACAACTTGCTGAAGATGCAGCTGAGGCTGAAGGAGGTGGTGCTATGGCAACAATTGCCAATCCTCGTAGAACTGCCAAAAAAACTACCACAGCAATAGCTTCTTTGAGAAATATGACACAGCAGAAACTGAATATACAAGGCAAAGGCTATAAGAACAAATGCTATGATCAAATTATACTGTTGAAGGACGATTCAACAGGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

285

Amino Acids

31.69

Weight (kDa)

4.94

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec6 PF06046 169 - 274 3.4e-13 Exocyst complex component Sec6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 3 cut(s) 426, 459, 593
AclWI GGATC 3 cut(s) 21, 462, 475
AcuI CTGAAG 3 cut(s) 47, 678, 696
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 8 cut(s) 233, 266, 313, 359, 509, 626, 832, 843
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 6 cut(s) 36, 164, 238, 286, 668, 746
AluI AGCT 6 cut(s) 36, 164, 238, 286, 668, 746
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 3 cut(s) 21, 462, 475
AlwNI CAGNNNCTG 1 cut(s) 775
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 461, 665
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 55, 522
AsuHPI GGTGA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 2 cut(s) 55, 522
BamHI GGATCC 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 548
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 448, 677
BccI CCATC 1 cut(s) 428
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 526
BclI TGATCA 2 cut(s) 643, 814
BcoDI GTCTC 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 462
BfuAI ACCTGC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 368
BisI GCNGC 3 cut(s) 459, 462, 666
BlsI GCNGC 3 cut(s) 460, 463, 667
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 2 cut(s) 55, 522
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 55, 522
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 1 cut(s) 526
BmsI GCATC 2 cut(s) 106, 652
BpiI GAAGAC 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 28, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 347
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 2 cut(s) 28, 525
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 357, 660
BseXI GCAGC 2 cut(s) 448, 677
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 524
BsnI GGCC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 372
Bsp143I GATC 4 cut(s) 13, 467, 643, 814
BspACI CCGC 3 cut(s) 426, 459, 593
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 358, 661
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 1 cut(s) 466
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 3 cut(s) 21, 462, 475
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 28, 525
BssMI GATC 4 cut(s) 13, 467, 643, 814
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 828
Bst6I CTCTTC 1 cut(s) 474
BstAPI GCANNNNNTGC 2 cut(s) 116, 701
BstC8I GCNNGC 6 cut(s) 50, 100, 162, 491, 593, 609
BstDEI CTNAG 4 cut(s) 125, 322, 366, 669
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 4 cut(s) 16, 470, 646, 817
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 4 cut(s) 13, 467, 643, 814
BstMWI GCNNNNNNNGC 8 cut(s) 33, 116, 166, 368, 458, 662, 671, 701
BstNI CCWGG 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 524
BstSFI CTRYAG 1 cut(s) 462
BstV1I GCAGC 2 cut(s) 448, 677
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 2 cut(s) 13, 467
BstYI RGATCY 2 cut(s) 13, 467
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 6 cut(s) 50, 100, 162, 491, 593, 609
CaiI CAGNNNCTG 1 cut(s) 775
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 55, 522
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 272
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 4 cut(s) 125, 322, 366, 669
DpnI GATC 4 cut(s) 15, 469, 645, 816
DpnII GATC 4 cut(s) 13, 467, 643, 814
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 28
Eco47I GGWCC 2 cut(s) 55, 522
Eco57I CTGAAG 3 cut(s) 47, 678, 696
Eco88I CYCGRG 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 522
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 275
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FatI CATG 1 cut(s) 271
FauI CCCGC 1 cut(s) 600
FbaI TGATCA 2 cut(s) 643, 814
Fnu4HI GCNGC 3 cut(s) 459, 462, 666
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 3 cut(s) 459, 462, 666
GlaI GCGC 1 cut(s) 159
GluI GCNGC 3 cut(s) 459, 462, 666
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 173, 377, 839
HpaI GTTAAC 1 cut(s) 423
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 2 cut(s) 367, 583
Hpy188III TCNNGA 3 cut(s) 374, 431, 538
Hpy8I GTNNAC 1 cut(s) 423
HpyAV CCTTC 5 cut(s) 71, 469, 489, 671, 826
HpyCH4III ACNGT 1 cut(s) 828
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 119, 452, 464, 631, 665
HpyF10VI GCNNNNNNNGC 8 cut(s) 33, 116, 166, 368, 458, 662, 671, 701
HpyF3I CTNAG 4 cut(s) 125, 322, 366, 669
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 2 cut(s) 643, 814
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 4 cut(s) 13, 467, 643, 814
Lsp1109I GCAGC 2 cut(s) 448, 677
LweI GCATC 2 cut(s) 106, 652
MaeII ACGT 1 cut(s) 545
MalI GATC 4 cut(s) 15, 469, 645, 816
MbiI CCGCTC 1 cut(s) 428
MboI GATC 4 cut(s) 13, 467, 643, 814
MboII GAAGA 5 cut(s) 491, 521, 553, 596, 671
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 2 cut(s) 13, 467
MluCI AATT 2 cut(s) 699, 819
MmeI TCCRAC 1 cut(s) 588
MseI TTAA 5 cut(s) 81, 185, 405, 422, 614
MspA1I CMGCKG 2 cut(s) 461, 668
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 526
MunI CAATTG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 526
MwoI GCNNNNNNNGC 8 cut(s) 33, 116, 166, 368, 458, 662, 671, 701
NdeII GATC 4 cut(s) 13, 467, 643, 814
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 469
NmeAIII GCCGAG 1 cut(s) 166
PfeI GAWTC 3 cut(s) 173, 377, 839
PkrI GCNGC 3 cut(s) 460, 463, 667
PpuMI RGGWCCY 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 2 cut(s) 55, 522
PspPPI RGGWCCY 1 cut(s) 522
PstI CTGCAG 1 cut(s) 466
PstNI CAGNNNCTG 1 cut(s) 775
PsuI RGATCY 2 cut(s) 13, 467
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 5 cut(s) 81, 185, 405, 422, 614
SatI GCNGC 3 cut(s) 459, 462, 666
Sau3AI GATC 4 cut(s) 13, 467, 643, 814
Sau96I GGNCC 2 cut(s) 55, 522
ScrFI CCNGG 1 cut(s) 526
SfaNI GCATC 2 cut(s) 106, 652
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 2 cut(s) 55, 522
Sse9I AATT 2 cut(s) 699, 819
SsiI CCGC 3 cut(s) 426, 459, 593
SspI AATATT 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 828
TaiI ACGT 1 cut(s) 548
TaqI TCGA 1 cut(s) 537
TasI AATT 2 cut(s) 699, 819
TatI WGTACW 1 cut(s) 128
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 3 cut(s) 173, 377, 839
Tru1I TTAA 5 cut(s) 81, 185, 405, 422, 614
Tru9I TTAA 5 cut(s) 81, 185, 405, 422, 614
TseI GCWGC 2 cut(s) 461, 665
TspGWI ACGGA 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 55, 522
VspI ATTAAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.