Rh1AG141600

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002387
Physical Location & Seq
Reverse (-)
26800762 .. 26815176
14415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG141600.1

Sequence Viewer

Length: 1632 bp
ATGCTTATACTGTGCTTTCAGTTTCATCTTCTGCAGGTTTCATTTGGTTCCAATAATGTTCCATCTCATTCTGAAAGCCAAGGAAGCAGCGCGCGGTTCGCGAGGTTGCGAAGCTGTTGCCTCTGCCGGACCTCCTTCAGTCTACCGCTTCCATTAAGGCCGATTACATTGCTCTGCCAACAGGCAAATGATGCACAACTTAGTACAATGGTTGCCGAGCAGGTAGAACATGCGCAAGCTGGGCTGGAATCCCTGTCCTTATCTCAAACATCAATAAACCAACTCCGTGAAAACTTTGTTTCTATTGAAAAGCTATATCAAGAATGCCAAACTTTGATTGAAAACCATGATAAGATAAAGCTTCTCAGCAATGCGAGGAATAACTTGAACACAACCTTAAAGGATGTCGAGGATAAGGAACTCATTAATACTTATGAGAGGTTAACAGCTCTTGATGGAAAGCGGAGGTTTGCATTAGCAGCTGCAGCATCCCACAAGGAAGAGGTTGGCAGGCTAAGGGAATATTTTGAAGATGTTGATAGGACCTGGGAGACATTTGAGAAGACGCTATGGTGCCACATTTCCAACTTCTATAATCTTTCCAAAGAAAGCCCGCAAACTCTGGCGTGCGCTTTAATAGTTGTTCAAATGCAAGAAATCCTTGACCAACAACTTGCTGAAGAAGCAGCTGAGGCTGAAGGAGGTGGTGCCATGGCATCAATTGCCAATCCTCGTAGAACTGCCAAAAAAACTACCACAGCAATAGCTTCTTCGAGAAATATGACACAGCAGAAACTGAATATACAAGGCAAAGGCTACAAGGACAAATGCTATGATCAAATTAGAAAGACTGTTGAAGGAAGATTCAATAGGCTACTGACAGAGCTTTGTTTCAAGGATTTTAAAGCAGCACTAGAGGAAGCTCGAACAATTGGAGAAGAGCTTGGAGATATATACAACCATGCAGCCCCTTGTTTTCCCCCCACATATGAAATATTCCAACTCATGGTCAATCTGTATACCGAGAGATTTGTTCGAATGCTTCGACTCCTCAGTGACAGGGCAAATGAAATGACGAACATAGAGATCTTAAAAGTAACTGTTTGGGTAGTTGAATACCAAGAAAACCTGATTGGGCTTGGTGTCGATGAATCTCTTGCTCAAGTATGTTCTGAGAGTGGTTCCATGGATCCCCTAATGAATTCCTATGTGGAGAGAATGCAAGCTACGACAAGGAAATGGTACTTGAATATCTTGGAGGCTGAAACACCGAAGAAAACAGAAGATGGGAAGCTATATACACCAGCTGCTGTTGATTTATTCAGGATCCTTGGAGAACAAGCGCAAATTGTTCGCGACAATAGCACAGATCTCATGCTTTACAGAATTGCTTTAGCAATTATCCAGGTAATGATTGATTTTCAAGCTGCTGAAAGGCGGAGACTTGAGGAACCTGCTTCAGAAGTTGGTTTGGAACCCTTATGTGCAATGGTTTATTACAACAATCTGCGCTGCTATGATCTCGCGATGGAGCTAAGTAATAGCACTTTGGAAGCTCTTCCACAAAATTATGCTGAGCAGGAAGCTGTGCATCAAACTGTCAGTGTCCCGGAGTGCAGTATTTACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

543

Amino Acids

61.7

Weight (kDa)

5.16

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec6 PF06046 176 - 528 1.9e-62 Exocyst complex component Sec6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 234
Acc36I ACCTGC 3 cut(s) 25, 211, 1462
AccB1I GGYRCC 2 cut(s) 573, 707
AccB7I CCANNNNNTGG 1 cut(s) 1006
AccI GTMKAC 2 cut(s) 142, 1019
AccII CGCG 5 cut(s) 92, 94, 101, 1356, 1526
AciI CCGC 5 cut(s) 94, 146, 463, 614, 1438
AclWI GGATC 4 cut(s) 1184, 1197, 1321, 1334
AcsI RAATTY 1 cut(s) 1201
AcuI CTGAAG 4 cut(s) 121, 699, 717, 1443
AfaI GTAC 2 cut(s) 205, 1244
AfiI CCNNNNNNNGG 1 cut(s) 1006
AjnI CCWGG 2 cut(s) 545, 1404
AjuI GAANNNNNNNTTGG 2 cut(s) 1116, 1148
Alw26I GTCTC 2 cut(s) 545, 1435
AlwI GGATC 4 cut(s) 1184, 1197, 1321, 1334
AlwNI CAGNNNCTG 2 cut(s) 796, 1310
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 1201
AseI ATTAAT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 1557
AspLEI GCGC 6 cut(s) 92, 94, 235, 632, 1345, 1512
AspS9I GGNCC 2 cut(s) 129, 543
AsuC2I CCSGG 1 cut(s) 1610
AsuII TTCGAA 1 cut(s) 1036
AvaII GGWCC 2 cut(s) 129, 543
BamHI GGATCC 2 cut(s) 1189, 1326
BanI GGYRCC 2 cut(s) 573, 707
BbsI GAAGAC 1 cut(s) 569
BbvCI CCTCAGC 1 cut(s) 690
BccI CCATC 4 cut(s) 70, 449, 1280, 1522
BcgI CGANNNNNNTGC 6 cut(s) 99, 133, 151, 185, 1334, 1368
BciT130I CCWGG 2 cut(s) 547, 1406
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 1 cut(s) 1610
BcoDI GTCTC 2 cut(s) 545, 1435
BfaI CTAG 1 cut(s) 914
BfmI CTRYAG 2 cut(s) 32, 483
BfuAI ACCTGC 3 cut(s) 25, 211, 1462
BglII AGATCT 2 cut(s) 1086, 1369
BlpI GCTNAGC 1 cut(s) 1575
Bme1390I CCNGG 3 cut(s) 547, 1406, 1610
Bme18I GGWCC 2 cut(s) 129, 543
BmgT120I GGNCC 2 cut(s) 129, 543
BmiI GGNNCC 8 cut(s) 49, 575, 709, 1183, 1191, 1328, 1452, 1476
BmrFI CCNGG 3 cut(s) 547, 1406, 1610
BmsI GCATC 4 cut(s) 181, 497, 725, 1600
BpiI GAAGAC 1 cut(s) 569
Bpu10I CCTNAGC 2 cut(s) 515, 690
Bpu1102I GCTNAGC 1 cut(s) 1575
Bpu14I TTCGAA 1 cut(s) 1036
BpuEI CTTGAG 2 cut(s) 1146, 1466
BpuMI CCSGG 1 cut(s) 1610
BsaJI CCNNGG 5 cut(s) 79, 546, 711, 1185, 1330
Bsc4I CCNNNNNNNGG 1 cut(s) 1006
Bse3DI GCAATG 3 cut(s) 167, 376, 1494
BseBI CCWGG 2 cut(s) 547, 1406
BseDI CCNNGG 5 cut(s) 79, 546, 711, 1185, 1330
BseGI GGATG 2 cut(s) 409, 488
BseLI CCNNNNNNNGG 1 cut(s) 1006
BseMI GCAATG 3 cut(s) 167, 376, 1494
BseMII CTCAG 5 cut(s) 379, 681, 1066, 1164, 1566
BsePI GCGCGC 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 1040
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 5 cut(s) 92, 94, 101, 1356, 1526
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 2 cut(s) 573, 707
BsiSI CCGG 2 cut(s) 127, 1610
BslFI GGGAC 1 cut(s) 1592
BslI CCNNNNNNNGG 1 cut(s) 1006
BsmAI GTCTC 2 cut(s) 545, 1435
BsmFI GGGAC 1 cut(s) 1592
BsmI GAATGC 3 cut(s) 329, 1044, 1224
BsnI GGCC 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 1036
Bsp143I GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
Bsp1720I GCTNAGC 1 cut(s) 1575
Bsp19I CCATGG 2 cut(s) 711, 1185
Bsp68I TCGCGA 3 cut(s) 101, 1356, 1526
BspACI CCGC 5 cut(s) 94, 146, 463, 614, 1438
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 5 cut(s) 378, 682, 1065, 1165, 1567
BspFNI CGCG 5 cut(s) 92, 94, 101, 1356, 1526
BspLI GGNNCC 8 cut(s) 49, 575, 709, 1183, 1191, 1328, 1452, 1476
BspMAI CTGCAG 2 cut(s) 36, 487
BspMI ACCTGC 3 cut(s) 25, 211, 1462
BspPI GGATC 4 cut(s) 1184, 1197, 1321, 1334
BspQI GCTCTTC 2 cut(s) 933, 1563
BspT104I TTCGAA 1 cut(s) 1036
BspT107I GGYRCC 2 cut(s) 573, 707
BsrDI GCAATG 3 cut(s) 167, 376, 1494
BssECI CCNNGG 5 cut(s) 79, 546, 711, 1185, 1330
BssHII GCGCGC 1 cut(s) 90
BssMI GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
BssNAI GTATAC 1 cut(s) 1020
BssT1I CCWWGG 4 cut(s) 79, 711, 1185, 1330
Bst1107I GTATAC 1 cut(s) 1020
Bst2UI CCWGG 2 cut(s) 547, 1406
Bst4CI ACNGT 4 cut(s) 12, 853, 1102, 1600
Bst6I CTCTTC 3 cut(s) 495, 933, 1563
BstAPI GCANNNNNTGC 2 cut(s) 191, 722
BstBI TTCGAA 1 cut(s) 1036
BstC8I GCNNGC 6 cut(s) 92, 237, 512, 614, 628, 1224
BstDEI CTNAG 8 cut(s) 200, 365, 515, 690, 1052, 1173, 1535, 1575
BstDSI CCRYGG 2 cut(s) 711, 1185
BstF5I GGATG 2 cut(s) 409, 488
BstFNI CGCG 5 cut(s) 92, 94, 101, 1356, 1526
BstHHI GCGC 6 cut(s) 92, 94, 235, 632, 1345, 1512
BstKTI GATC 6 cut(s) 838, 1089, 1192, 1329, 1372, 1522
BstMAI GTCTC 2 cut(s) 545, 1435
BstMBI GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
BstNI CCWGG 2 cut(s) 547, 1406
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 545, 1404, 1608
BstSFI CTRYAG 2 cut(s) 32, 483
BstUI CGCG 5 cut(s) 92, 94, 101, 1356, 1526
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 4 cut(s) 1086, 1189, 1326, 1369
BstYI RGATCY 4 cut(s) 1086, 1189, 1326, 1369
BstZ17I GTATAC 1 cut(s) 1020
BsuRI GGCC 1 cut(s) 160
BtgI CCRYGG 2 cut(s) 711, 1185
BtgZI GCGATG 1 cut(s) 1541
BtsCI GGATG 2 cut(s) 409, 488
BtsIMutI CAGTG 2 cut(s) 1060, 1609
BtuMI TCGCGA 3 cut(s) 101, 1356, 1526
BveI ACCTGC 3 cut(s) 25, 211, 1462
Cac8I GCNNGC 6 cut(s) 92, 237, 512, 614, 628, 1224
CaiI CAGNNNCTG 2 cut(s) 796, 1310
CfoI GCGC 6 cut(s) 92, 94, 235, 632, 1345, 1512
Cfr13I GGNCC 2 cut(s) 129, 543
CseI GACGC 1 cut(s) 574
Csp6I GTAC 2 cut(s) 204, 1243
CviAII CATG 7 cut(s) 230, 347, 712, 962, 1006, 1186, 1375
CviQI GTAC 2 cut(s) 204, 1243
DdeI CTNAG 8 cut(s) 200, 365, 515, 690, 1052, 1173, 1535, 1575
DpnI GATC 6 cut(s) 837, 1088, 1191, 1328, 1371, 1521
DpnII GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
DraI TTTAAA 1 cut(s) 904
Eam1104I CTCTTC 3 cut(s) 495, 933, 1563
EarI CTCTTC 3 cut(s) 495, 933, 1563
EciI GGCGGA 1 cut(s) 1453
Eco130I CCWWGG 4 cut(s) 79, 711, 1185, 1330
Eco47I GGWCC 2 cut(s) 129, 543
Eco57I CTGAAG 4 cut(s) 121, 699, 717, 1443
EcoO109I RGGNCCY 1 cut(s) 543
EcoRI GAATTC 1 cut(s) 1201
EcoRII CCWGG 2 cut(s) 545, 1404
EcoT14I CCWWGG 4 cut(s) 79, 711, 1185, 1330
ErhI CCWWGG 4 cut(s) 79, 711, 1185, 1330
FaeI CATG 7 cut(s) 233, 350, 715, 965, 1009, 1189, 1378
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 1 cut(s) 1592
FatI CATG 7 cut(s) 229, 346, 711, 961, 1005, 1185, 1374
FauI CCCGC 1 cut(s) 621
FauNDI CATATG 1 cut(s) 988
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 2 cut(s) 142, 1019
FokI GGATG 2 cut(s) 416, 475
FspBI CTAG 1 cut(s) 914
FspI TGCGCA 1 cut(s) 234
GlaI GCGC 6 cut(s) 91, 93, 234, 631, 1344, 1511
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 160
HapII CCGG 2 cut(s) 127, 1610
HgaI GACGC 1 cut(s) 574
HhaI GCGC 6 cut(s) 92, 94, 235, 632, 1345, 1512
Hin1II CATG 7 cut(s) 233, 350, 715, 965, 1009, 1189, 1378
Hin6I GCGC 6 cut(s) 90, 92, 233, 630, 1343, 1510
HinP1I GCGC 6 cut(s) 90, 92, 233, 630, 1343, 1510
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 4 cut(s) 248, 864, 1047, 1151
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 2 cut(s) 127, 1610
Hpy166II GTNNAC 3 cut(s) 143, 444, 1020
Hpy188I TCNGA 3 cut(s) 73, 1174, 1462
Hpy188III TCNNGA 7 cut(s) 100, 320, 452, 774, 1324, 1355, 1525
Hpy8I GTNNAC 3 cut(s) 143, 444, 1020
HpyAV CCTTC 3 cut(s) 145, 692, 851
HpyCH4III ACNGT 4 cut(s) 12, 853, 1102, 1600
HpyF3I CTNAG 8 cut(s) 200, 365, 515, 690, 1052, 1173, 1535, 1575
Hsp92II CATG 7 cut(s) 233, 350, 715, 965, 1009, 1189, 1378
HspAI GCGC 6 cut(s) 90, 92, 233, 630, 1343, 1510
Ksp22I TGATCA 1 cut(s) 835
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
LguI GCTCTTC 2 cut(s) 933, 1563
LmnI GCTCC 1 cut(s) 1531
LweI GCATC 4 cut(s) 181, 497, 725, 1600
MaeI CTAG 1 cut(s) 914
MaeIII GTNAC 2 cut(s) 1055, 1096
MalI GATC 6 cut(s) 837, 1088, 1191, 1328, 1371, 1521
MboI GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
MfeI CAATTG 2 cut(s) 720, 930
MflI RGATCY 4 cut(s) 1086, 1189, 1326, 1369
MluCI AATT 8 cut(s) 720, 840, 930, 1201, 1347, 1386, 1398, 1567
MlyI GAGTC 1 cut(s) 1041
MmeI TCCRAC 2 cut(s) 609, 1024
MroXI GAANNNNTTC 1 cut(s) 1557
MseI TTAA 7 cut(s) 155, 398, 426, 443, 635, 903, 1091
MspA1I CMGCKG 3 cut(s) 482, 689, 1307
MspI CCGG 2 cut(s) 127, 1610
MspR9I CCNGG 3 cut(s) 547, 1406, 1610
MunI CAATTG 2 cut(s) 720, 930
Mva1269I GAATGC 3 cut(s) 329, 1044, 1224
MvaI CCWGG 2 cut(s) 547, 1406
MvnI CGCG 5 cut(s) 92, 94, 101, 1356, 1526
NciI CCSGG 1 cut(s) 1610
NcoI CCATGG 2 cut(s) 711, 1185
NdeI CATATG 1 cut(s) 988
NdeII GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
NlaIII CATG 7 cut(s) 233, 350, 715, 965, 1009, 1189, 1378
NlaIV GGNNCC 8 cut(s) 49, 575, 709, 1183, 1191, 1328, 1452, 1476
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 1055
NruI TCGCGA 3 cut(s) 101, 1356, 1526
NsbI TGCGCA 1 cut(s) 234
NspI RCATGY 1 cut(s) 233
NspV TTCGAA 1 cut(s) 1036
PauI GCGCGC 1 cut(s) 90
PciSI GCTCTTC 2 cut(s) 933, 1563
PcsI WCGNNNNNNNCGW 1 cut(s) 1042
PctI GAATGC 3 cut(s) 329, 1044, 1224
PdmI GAANNNNTTC 1 cut(s) 1557
PfeI GAWTC 3 cut(s) 248, 864, 1151
PflMI CCANNNNNTGG 1 cut(s) 1006
PfoI TCCNGGA 1 cut(s) 1608
PleI GAGTC 1 cut(s) 1041
PpsI GAGTC 1 cut(s) 1041
PpuMI RGGWCCY 1 cut(s) 543
PshBI ATTAAT 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 545, 1404
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 545, 1404
PspN4I GGNNCC 8 cut(s) 49, 575, 709, 1183, 1191, 1328, 1452, 1476
PspPI GGNCC 2 cut(s) 129, 543
PspPPI RGGWCCY 1 cut(s) 543
PstI CTGCAG 2 cut(s) 36, 487
PstNI CAGNNNCTG 2 cut(s) 796, 1310
PsuI RGATCY 4 cut(s) 1086, 1189, 1326, 1369
PteI GCGCGC 1 cut(s) 90
PvuII CAGCTG 3 cut(s) 482, 689, 1307
RruI TCGCGA 3 cut(s) 101, 1356, 1526
RsaI GTAC 2 cut(s) 205, 1244
RsaNI GTAC 2 cut(s) 204, 1243
SapI GCTCTTC 2 cut(s) 933, 1563
SaqAI TTAA 7 cut(s) 155, 398, 426, 443, 635, 903, 1091
Sau3AI GATC 6 cut(s) 835, 1086, 1189, 1326, 1369, 1519
Sau96I GGNCC 2 cut(s) 129, 543
SchI GAGTC 1 cut(s) 1041
ScrFI CCNGG 3 cut(s) 547, 1406, 1610
SfaNI GCATC 4 cut(s) 181, 497, 725, 1600
SfcI CTRYAG 2 cut(s) 32, 483
SfuI TTCGAA 1 cut(s) 1036
SinI GGWCC 2 cut(s) 129, 543
SmlI CTYRAG 2 cut(s) 1161, 1445
SmoI CTYRAG 2 cut(s) 1161, 1445
Sse9I AATT 8 cut(s) 720, 840, 930, 1201, 1347, 1386, 1398, 1567
SsiI CCGC 5 cut(s) 94, 146, 463, 614, 1438
SspI AATATT 2 cut(s) 524, 996
SspMI CTAG 1 cut(s) 914
StyD4I CCNGG 3 cut(s) 545, 1404, 1608
StyI CCWWGG 4 cut(s) 79, 711, 1185, 1330
TaaI ACNGT 4 cut(s) 12, 853, 1102, 1600
TaqI TCGA 6 cut(s) 408, 773, 925, 1036, 1045, 1146
TasI AATT 8 cut(s) 720, 840, 930, 1201, 1347, 1386, 1398, 1567
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 3 cut(s) 248, 864, 1151
Tru1I TTAA 7 cut(s) 155, 398, 426, 443, 635, 903, 1091
Tru9I TTAA 7 cut(s) 155, 398, 426, 443, 635, 903, 1091
TscAI CASTG 2 cut(s) 1060, 1609
TseFI GTSAC 1 cut(s) 1055
Tsp45I GTSAC 1 cut(s) 1055
TspDTI ATGAA 6 cut(s) 14, 30, 1005, 1083, 1164, 1214
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 1060, 1609
Van91I CCANNNNNTGG 1 cut(s) 1006
VpaK11BI GGWCC 2 cut(s) 129, 543
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 1 cut(s) 1201
XceI RCATGY 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 142, 1019
XmnI GAANNNNTTC 1 cut(s) 1557
XspI CTAG 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.