Rorug01G0118700

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002387
Physical Location & Seq
Reverse (-)
20756771 .. 20757190
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0118700.1

Sequence Viewer

Length: 420 bp
ATGGTCCTGGTCCAAAACATGTGTCACCAGTACCTGGGAGTTAAGCAGAAGATCCGGGTTTCCAAGGACGAGTTCAACTGGAAGGATGGTGAAAATCATTGGGAGAATTTCTTGAAGTACAAGGAAGTGTTTGGTGATGTGGAGCTTGATGGTAAGGGCAAGAAATCGTGTGAAAATGATAACTTTGATGTTTTTGGGGATTGTGGGGACTTGGGGTTTGGTATTGATTGTGAGGATTTAGAGGAAGGAGAAGATGATGAAGAAGAAGAAGAACATTTGGAAGAAGAAGAAGAAGAAGATGGTACTGGTGGTGATGACGATAATCGTAGCGAGGAATTGGGTAAAACTGAAGTTGGTGAGATTGGGGGTGAAAGGGAAATTGGGGACATGGGAATGGCTCAAAAAAGGAAAGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

139

Amino Acids

15.81

Weight (kDa)

4.18

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 32, 119, 304
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 2 cut(s) 76, 115
AjnI CCWGG 2 cut(s) 6, 33
AjuI GAANNNNNNNTTGG 4 cut(s) 56, 88, 363, 395
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AlwI GGATC 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 34
ApoI RAATTY 1 cut(s) 106
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 200, 232
AspS9I GGNCC 2 cut(s) 4, 10
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 6 cut(s) 17, 101, 146, 323, 368, 380
AvaII GGWCC 2 cut(s) 4, 10
BccI CCATC 3 cut(s) 80, 143, 293
BciT130I CCWGG 2 cut(s) 8, 35
BcnI CCSGG 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 8, 35, 56
Bme18I GGWCC 2 cut(s) 4, 10
BmgT120I GGNCC 2 cut(s) 4, 10
BmrFI CCNGG 3 cut(s) 8, 35, 56
BpuMI CCSGG 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 34, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 28, 83, 310
BseBI CCWGG 2 cut(s) 8, 35
BseDI CCNNGG 2 cut(s) 34, 63
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 34
BseNI ACTGG 3 cut(s) 28, 83, 310
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 2 cut(s) 221, 398
BslI CCNNNNNNNGG 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 221, 398
Bsp143I GATC 1 cut(s) 51
BspPI GGATC 1 cut(s) 46
BsrI ACTGG 3 cut(s) 28, 83, 310
BssECI CCNNGG 2 cut(s) 34, 63
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 8, 35
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstNI CCWGG 2 cut(s) 8, 35
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 3 cut(s) 6, 33, 54
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BtsCI GGATG 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 4, 10
Csp6I GTAC 3 cut(s) 31, 118, 303
CviAII CATG 2 cut(s) 19, 388
CviJI RGCY 2 cut(s) 145, 398
CviKI_1 RGCY 2 cut(s) 145, 398
CviQI GTAC 3 cut(s) 31, 118, 303
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 4, 10
Eco57I CTGAAG 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 6, 33
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 22, 391
FaiI YATR 2 cut(s) 20, 389
FaqI GGGAC 2 cut(s) 221, 398
FatI CATG 2 cut(s) 18, 387
FokI GGATG 1 cut(s) 98
HapII CCGG 1 cut(s) 55
Hin1II CATG 2 cut(s) 22, 391
HpaII CCGG 1 cut(s) 55
HphI GGTGA 6 cut(s) 17, 101, 146, 323, 368, 380
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 76, 239
Hsp92II CATG 2 cut(s) 22, 391
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 20, 20, 41, 47, 64, 68, 291
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MflI RGATCY 1 cut(s) 51
MluCI AATT 4 cut(s) 106, 335, 378, 415
MnlI CCTC 3 cut(s) 226, 235, 325
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 3 cut(s) 8, 35, 56
MvaI CCWGG 2 cut(s) 8, 35
NciI CCSGG 1 cut(s) 56
NdeII GATC 1 cut(s) 51
NlaIII CATG 2 cut(s) 22, 391
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 22
PciI ACATGT 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 34
PscI ACATGT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 6, 33
PspGI CCWGG 2 cut(s) 6, 33
PspPI GGNCC 2 cut(s) 4, 10
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 3 cut(s) 32, 119, 304
RsaNI GTAC 3 cut(s) 31, 118, 303
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 2 cut(s) 4, 10
ScrFI CCNGG 3 cut(s) 8, 35, 56
SetI ASST 2 cut(s) 36, 147
SinI GGWCC 2 cut(s) 4, 10
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 4 cut(s) 106, 335, 378, 415
StyD4I CCNGG 3 cut(s) 6, 33, 54
StyI CCWWGG 1 cut(s) 63
TasI AATT 4 cut(s) 106, 335, 378, 415
TatI WGTACW 1 cut(s) 117
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 273
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 4, 10
XapI RAATTY 1 cut(s) 106
XceI RCATGY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.