pycom12g09190

SNAP receptor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003230
Physical Location & Seq
Reverse (-)
11062164 .. 11064186
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGCGAGAATTCAATGATGCTTCGAAGCTTGCTGATGAAATCAATGGCATGATTTCCGGAAGGAGTTCGTTGCCAGTGTCACCCTCTGGACCAGAAACACAACGTCATATGTCTGCAACTCGAAGAAAGGTTACGATACTAAGGACAAAGCTTGAGACTTTGCACTCACTCCTGTCTAAGCTTCCCACCAAGCAGAAGGAGTCAATAACAGGAAAAGAAATGAATCGTCGCAAAGATATGCTCGCAAGTTTGAGTTCTAAAGCTGATCAAATGGCTACTACTCTCAACATGTCTAGTCTTGCTAACAGAAATAACTTGCTCGGCCCTGATAAGAAGATGGATGACATAATGAGCAGAACAACTGGTTTAGACAATCATGGTCTTGTTGGCTTTCAACGACAAATCATTAAAGAACAAGATGAAGGCCTTGACAAATTGGAGGAGACGGTTATTAGTACCAAACACATTGCGTTGGCAGTCAACGAGGAACTTGATCTGCACACGAGGCTTCTGGATAATCTGGACCAGCAGGTGGAATCAACAAATTCGAACCTACAGCGGGTGCAAAAGAAATTGGCAGTACTGAACAAACGCAACAAAGGTGGTTGTTCTTGCTTGATCCTACTGGTCATTGGAGTTGTGATTTTGATAATTGTCACCTGGGCATTGATTAAGTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000138 GO:0000149 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0000407 GO:0001505 GO:0002376 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005769 GO:0005770 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0006836 GO:0006886 GO:0006887 GO:0006892 GO:0006896 GO:0006904 GO:0006906 GO:0006914 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008104 GO:0008150 GO:0008152 GO:0008200 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010033 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016079 GO:0016081 GO:0016192 GO:0016236 GO:0016237 GO:0016247 GO:0016248 GO:0016482 GO:0017081 GO:0017156 GO:0019869 GO:0019899 GO:0019905 GO:0022406 GO:0023052 GO:0023061 GO:0030139 GO:0031090 GO:0031201 GO:0031224 GO:0031226 GO:0031410 GO:0031625 GO:0031902 GO:0031982 GO:0031984 GO:0031985 GO:0032258 GO:0032266 GO:0032879 GO:0032880 GO:0032940 GO:0032991 GO:0033036 GO:0033365 GO:0034097 GO:0034341 GO:0034613 GO:0034727 GO:0035091 GO:0042144 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044804 GO:0045022 GO:0045055 GO:0045087 GO:0045184 GO:0045335 GO:0046903 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0048471 GO:0048489 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0055037 GO:0060341 GO:0061024 GO:0061025 GO:0061919 GO:0065007 GO:0065008 GO:0065009 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072665 GO:0090174 GO:0097479 GO:0097480 GO:0097576 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098796 GO:0098805 GO:0098852 GO:0098916 GO:0098927 GO:0099003 GO:0099106 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0140029 GO:0140056 GO:1901981 GO:1903076 GO:1903827 GO:1904375 GO:1905475
KEGG Pathways
Metabolic & Signaling
ko04130 ko04138 map04130 map04138
Pfam Domains
Protein Families
PX SNARE

Protein Analysis

228

Amino Acids

25.34

Weight (kDa)

9.46

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 170 - 219 8.2e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 532
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 1 cut(s) 559
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 2 cut(s) 8, 544
AfaI GTAC 3 cut(s) 457, 582, 677
AfiI CCNNNNNNNGG 2 cut(s) 532, 559
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 2 cut(s) 13, 395
AjnI CCWGG 1 cut(s) 659
AluBI AGCT 4 cut(s) 28, 151, 181, 263
AluI AGCT 4 cut(s) 28, 151, 181, 263
Alw26I GTCTC 2 cut(s) 149, 437
AlwI GGATC 1 cut(s) 613
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 2 cut(s) 322, 424
ApoI RAATTY 2 cut(s) 8, 544
Asp700I GAANNNNTTC 1 cut(s) 64
AspS9I GGNCC 3 cut(s) 89, 323, 523
AsuHPI GGTGA 2 cut(s) 72, 649
AsuII TTCGAA 2 cut(s) 23, 548
AvaII GGWCC 2 cut(s) 89, 523
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BauI CACGAG 1 cut(s) 502
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 661
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 149, 437
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 554
BfuAI ACCTGC 1 cut(s) 520
BmcAI AGTACT 2 cut(s) 582, 677
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 2 cut(s) 89, 523
BmgT120I GGNCC 3 cut(s) 89, 323, 523
BmrFI CCNGG 1 cut(s) 661
BmsI GCATC 1 cut(s) 7
Bpu14I TTCGAA 2 cut(s) 23, 548
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 559
Bse1I ACTGG 3 cut(s) 74, 367, 630
Bse3DI GCAATG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 532, 559
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 3 cut(s) 74, 367, 630
BseRI GAGGAG 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 2 cut(s) 324, 426
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 532, 559
BsmAI GTCTC 2 cut(s) 149, 437
BsmBI CGTCTC 1 cut(s) 437
BsnI GGCC 2 cut(s) 324, 426
Bsp119I TTCGAA 2 cut(s) 23, 548
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 3 cut(s) 265, 493, 618
BspACI CCGC 1 cut(s) 559
BspANI GGCC 2 cut(s) 324, 426
BspEI TCCGGA 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 1 cut(s) 613
BspT104I TTCGAA 2 cut(s) 23, 548
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 3 cut(s) 74, 367, 630
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 3 cut(s) 265, 493, 618
BssSI CACGAG 1 cut(s) 502
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 448
BstBI TTCGAA 2 cut(s) 23, 548
BstC8I GCNNGC 2 cut(s) 30, 243
BstDEI CTNAG 2 cut(s) 140, 177
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 3 cut(s) 268, 496, 621
BstMAI GTCTC 2 cut(s) 149, 437
BstMBI GATC 3 cut(s) 265, 493, 618
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNI CCWGG 1 cut(s) 661
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 554
BsuRI GGCC 2 cut(s) 324, 426
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 30, 243
Cfr13I GGNCC 3 cut(s) 89, 323, 523
Csp6I GTAC 3 cut(s) 456, 581, 676
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 3 cut(s) 49, 289, 377
CviJI RGCY 9 cut(s) 28, 151, 181, 263, 275, 324, 390, 426, 508
CviKI_1 RGCY 9 cut(s) 28, 151, 181, 263, 275, 324, 390, 426, 508
CviQI GTAC 3 cut(s) 456, 581, 676
DdeI CTNAG 2 cut(s) 140, 177
DpnI GATC 3 cut(s) 267, 495, 620
DpnII GATC 3 cut(s) 265, 493, 618
Eco147I AGGCCT 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 89, 523
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 659
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 3 cut(s) 52, 292, 380
FaiI YATR 7 cut(s) 50, 108, 110, 239, 290, 347, 378
FatI CATG 3 cut(s) 48, 288, 376
FauI CCCGC 1 cut(s) 552
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 265
FokI GGATG 1 cut(s) 353
FspBI CTAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 324, 426
HapII CCGG 1 cut(s) 57
Hin1II CATG 3 cut(s) 52, 292, 380
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 3 cut(s) 26, 149, 179
HinfI GANTC 3 cut(s) 200, 223, 536
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 72, 649
Hpy166II GTNNAC 1 cut(s) 481
Hpy188III TCNNGA 4 cut(s) 57, 87, 512, 521
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 3 cut(s) 54, 190, 416
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 116, 163, 499, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 2 cut(s) 140, 177
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 3 cut(s) 52, 292, 380
Kpn2I TCCGGA 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 265, 493, 618
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 78, 130, 655
MalI GATC 3 cut(s) 267, 495, 620
MboI GATC 3 cut(s) 265, 493, 618
MboII GAAGA 2 cut(s) 135, 346
MluCI AATT 5 cut(s) 8, 434, 544, 572, 651
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 4 cut(s) 94, 433, 478, 498
MroI TCCGGA 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 2 cut(s) 408, 672
MspA1I CMGCKG 1 cut(s) 559
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 661
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 505
NdeI CATATG 1 cut(s) 108
NdeII GATC 3 cut(s) 265, 493, 618
NlaIII CATG 3 cut(s) 52, 292, 380
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 78, 655
NspI RCATGY 1 cut(s) 292
NspV TTCGAA 2 cut(s) 23, 548
PaqCI CACCTGC 1 cut(s) 520
PceI AGGCCT 1 cut(s) 426
PciI ACATGT 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 223, 536
PflMI CCANNNNNTGG 1 cut(s) 532
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspPI GGNCC 3 cut(s) 89, 323, 523
RsaI GTAC 3 cut(s) 457, 582, 677
RsaNI GTAC 3 cut(s) 456, 581, 676
SaqAI TTAA 2 cut(s) 408, 672
Sau3AI GATC 3 cut(s) 265, 493, 618
Sau96I GGNCC 3 cut(s) 89, 323, 523
ScaI AGTACT 2 cut(s) 582, 677
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 661
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 554
SfuI TTCGAA 2 cut(s) 23, 548
SinI GGWCC 2 cut(s) 89, 523
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 5 cut(s) 8, 434, 544, 572, 651
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 1 cut(s) 559
SspMI CTAG 1 cut(s) 294
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 659
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 106
TaqI TCGA 3 cut(s) 23, 121, 548
TasI AATT 5 cut(s) 8, 434, 544, 572, 651
TatI WGTACW 2 cut(s) 580, 675
TfiI GAWTC 2 cut(s) 223, 536
Tru1I TTAA 2 cut(s) 408, 672
Tru9I TTAA 2 cut(s) 408, 672
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 2 cut(s) 78, 655
Tsp45I GTSAC 2 cut(s) 78, 655
TspDTI ATGAA 3 cut(s) 51, 236, 435
TspRI CASTG 1 cut(s) 81
Van91I CCANNNNNTGG 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 89, 523
XapI RAATTY 2 cut(s) 8, 544
XceI RCATGY 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 2 cut(s) 582, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.