Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008872

Physical Location & Seq

Genomic Coordinates Forward (+)

12224028 .. 12225205

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAAGGTGATCTAACTGCAAAAGACGCTTTGTGTGCACAGTATGCCGAGCTGAAGAACGAGCTCAACCAGATTAGGAGAGCCAACGAGCAGTATCAGCTGAAAATACAGCTACTTGAGGAGGAGAGAAGTGACTTCCTAAGAAAGTCTCAGGCCCTTGAACAAGAATTGAAACTAACAAGGGAAGAAAAACAGAAACAGAGGGATTCCAGCAGTCCAAAGATTTCCAGCTCCTCAAAAGGCGGCACCAGAGTTAATCCTGTTGGTGAAGATATGAAGGTCCTGAAAAAGGAAATGGGGAAGAACAGCATTCCCCGTCATGATTTTAGAAGGAAGCCAATTTTGAAGAATGGTCAGGTGCAAGGACATGCAAGAGATCAGAATTATCCATATAGAAACCAGCATCAAAGAGAGGATGACATTGGAGTCCAAATTCATGATGAAAATCCAAATGACGTTGAAGAACTTGGCGTAAAGATTAAGTTGCTTGAAGATGAACTTGTTAAGGCATTGGAAGTAAATAACACTTACAAAGTTCAGCTTGATAGGTACTTGTCTGAGGCCCGACACAGTCAAGCAGATGCTCGTCGAAATTCAAAAGCTGAAGAAAGACAAGAACGCTCGAGGTCATCTCTAGAGGCAGAACTGAAAGACATTCGCGAGCGCTACTTAGACATGAGCCTGAGATATGCCGAGGTAGAAGCACAGCGCGAGGAGCTTGTGATGAAGCTTAAAACAGCCAAGGGTGGCAAAAGGTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

255

Amino Acids

29.75

Weight (kDa)

8.73

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17113 FvH4_6g17113 FvH4_6g17113
malus_domestica	MD12G1103600.v1.1 MD14G1098000.v1.1
prunus_persica	Prupe.7G123700_v2.0.a1 Prupe.7G123700_v2.0.a1
pyrus_communis	pycom12g10210 pycom12g10220 pycom14g09580
rosa_chinensis	RchiOBHm_Chr3g0471201
rosa_laevigata	RLG00000024198
rosa_multiflora	Rmu_co8155386.1_g000001 Rmu_co8183594.1_g000001 Rmu_sc0031310.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410230
rosa_rugosa	Rorug03G0116000 Rorug03G0116100
rosa_samantha	Rh3AG165000 Rh3BG190600 Rh3CG180900 Rh3DG185200
rosa_wichuraiana	Rw3G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	2 cut(s)	660, 711
AciI	CCGC	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	432, 592
AcuI	CTGAAG	2 cut(s)	74, 624
AfaI	GTAC	1 cut(s)	551
AfeI	AGCGCT	1 cut(s)	665
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	6 cut(s)	161, 172, 346, 461, 491, 597
AluBI	AGCT	9 cut(s)	52, 64, 100, 112, 231, 541, 602, 718, 730
AluI	AGCT	9 cut(s)	52, 64, 100, 112, 231, 541, 602, 718, 730
Alw21I	GWGCWC	2 cut(s)	40, 66
Alw26I	GTCTC	1 cut(s)	153
Alw44I	GTGCAC	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	622
Aor51HI	AGCGCT	1 cut(s)	665
AoxI	GGCC	2 cut(s)	153, 561
ApaLI	GTGCAC	1 cut(s)	36
ApoI	RAATTY	2 cut(s)	432, 592
AspLEI	GCGC	2 cut(s)	666, 711
AspS9I	GGNCC	3 cut(s)	154, 280, 562
AsuHPI	GGTGA	2 cut(s)	20, 278
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	40, 66
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	635
BfoI	RGCGCY	1 cut(s)	667
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	3 cut(s)	154, 280, 562
BmiI	GGNNCC	1 cut(s)	247
BmsI	GCATC	2 cut(s)	412, 571
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpuEI	CTTGAG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	693, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	693, 741
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	164, 549, 674
BseRI	GAGGAG	4 cut(s)	134, 137, 223, 728
BseSI	GKGCMC	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	660, 711
BshFI	GGCC	2 cut(s)	155, 563
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	2 cut(s)	40, 66
BsiHKCI	CYCGRG	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	155, 563
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	40, 66
Bsp143I	GATC	2 cut(s)	10, 376
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	155, 563
BspCNI	CTCAG	3 cut(s)	163, 550, 675
BspFNI	CGCG	2 cut(s)	660, 711
BspHI	TCATGA	2 cut(s)	319, 436
BspLI	GGNNCC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	693, 741
BssMI	GATC	2 cut(s)	10, 376
BssT1I	CCWWGG	1 cut(s)	741
Bst4CI	ACNGT	2 cut(s)	42, 572
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	5 cut(s)	140, 150, 558, 670, 683
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	660, 711
BstH2I	RGCGCY	1 cut(s)	667
BstHHI	GCGC	2 cut(s)	666, 711
BstKTI	GATC	2 cut(s)	13, 379
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	2 cut(s)	10, 376
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 35, 44, 97, 715
BstNSI	RCATGY	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	2 cut(s)	660, 711
BsuRI	GGCC	2 cut(s)	155, 563
BtsCI	GGATG	1 cut(s)	421
BtuMI	TCGCGA	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	662
CciI	TCATGA	2 cut(s)	319, 436
CfoI	GCGC	2 cut(s)	666, 711
Cfr13I	GGNCC	3 cut(s)	154, 280, 562
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	4 cut(s)	320, 368, 437, 676
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	5 cut(s)	140, 150, 558, 670, 683
DpnI	GATC	2 cut(s)	12, 378
DpnII	GATC	2 cut(s)	10, 376
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	280
Eco47III	AGCGCT	1 cut(s)	665
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	74, 624
Eco88I	CYCGRG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	154, 280
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	4 cut(s)	323, 371, 440, 679
FaiI	YATR	9 cut(s)	45, 275, 321, 369, 391, 393, 438, 677, 690
FalI	AAGNNNNNCTT	4 cut(s)	483, 515, 525, 557
FatI	CATG	4 cut(s)	319, 367, 436, 675
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	2 cut(s)	665, 710
GluI	GCNGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	667
HaeIII	GGCC	2 cut(s)	155, 563
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	2 cut(s)	666, 711
Hin1II	CATG	4 cut(s)	323, 371, 440, 679
Hin6I	GCGC	2 cut(s)	664, 709
HinP1I	GCGC	2 cut(s)	664, 709
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	2 cut(s)	206, 426
HphI	GGTGA	2 cut(s)	20, 278
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	381, 559, 764
Hpy188III	TCNNGA	5 cut(s)	283, 320, 437, 635, 659
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	2 cut(s)	271, 324
HpyCH4III	ACNGT	2 cut(s)	42, 572
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	4 cut(s)	20, 38, 361, 371
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 35, 44, 97, 715
HpyF3I	CTNAG	5 cut(s)	140, 150, 558, 670, 683
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	323, 371, 440, 679
HspAI	GCGC	2 cut(s)	664, 709
Kzo9I	GATC	2 cut(s)	10, 376
LmnI	GCTCC	2 cut(s)	236, 715
LweI	GCATC	2 cut(s)	412, 571
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	12, 378
MboI	GATC	2 cut(s)	10, 376
MboII	GAAGA	8 cut(s)	67, 197, 281, 313, 358, 473, 503, 617
MhlI	GDGCHC	2 cut(s)	40, 66
MluCI	AATT	5 cut(s)	167, 339, 382, 432, 592
MlyI	GAGTC	1 cut(s)	435
MseI	TTAA	4 cut(s)	255, 480, 504, 732
MspA1I	CMGCKG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	309
MvnI	CGCG	2 cut(s)	660, 711
MwoI	GCNNNNNNNGC	5 cut(s)	26, 35, 44, 97, 715
NdeII	GATC	2 cut(s)	10, 376
NlaIII	CATG	4 cut(s)	323, 371, 440, 679
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	2 cut(s)	73, 718
NmuCI	GTSAC	1 cut(s)	131
NruI	TCGCGA	1 cut(s)	660
NspI	RCATGY	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	622
PagI	TCATGA	2 cut(s)	319, 436
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	206
PflFI	GACNNNGTC	1 cut(s)	570
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	3 cut(s)	154, 280, 562
PspPPI	RGGWCCY	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	622
PsyI	GACNNNGTC	1 cut(s)	570
PvuII	CAGCTG	1 cut(s)	100
RruI	TCGCGA	1 cut(s)	660
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	255, 480, 504, 732
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	10, 376
Sau96I	GGNCC	3 cut(s)	154, 280, 562
SchI	GAGTC	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	40, 66
SfaNI	GCATC	2 cut(s)	412, 571
Sfr274I	CTCGAG	1 cut(s)	622
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	116, 622
SmoI	CTYRAG	2 cut(s)	116, 622
Sse9I	AATT	5 cut(s)	167, 339, 382, 432, 592
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	635
SstI	GAGCTC	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	42, 572
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	589, 623
TasI	AATT	5 cut(s)	167, 339, 382, 432, 592
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	4 cut(s)	255, 480, 504, 732
Tru9I	TTAA	4 cut(s)	255, 480, 504, 732
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	5 cut(s)	290, 425, 456, 510, 740
Tth111I	GACNNNGTC	1 cut(s)	570
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	432, 592
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	622
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.