Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031310.1

Orthogroup ID

OG0008872

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2756

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031310.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1265 bp

atgtttaggatacacaggaacaggccggcgaagtcaggcgagagaatcgatttcaagttctctcagttcaaagccgttcaggtgccgagaggatgggacaagttgtatgtgtccattgtgtctgtggaaactgggaagacaattgctaagtcgagcaaagcggcggtgcggaatggaagctgtcaatggagtgaggcgctttccgagtctatatggatttcgcaggatgattcttccaaggagatggaagattctttcttcaagctggtggttgccatgggatcggcgagatctggaatccttggagaggctacagtcaatatgtcggattatataacttcaagttctactgctccagtttcgcttccattgaaaaagtgcaactatgggacagttttacaggtgaaaattaactgcctaaagccaagagcaagggtcagggatgaagagtcaaaagagacaagcagtcatttggaagaacaaaatggaactggtaatgatgtggacggcaaatcagatggatccggtagtacatttggaaggagtctcggatcttcctccacaaaagattttggcttgacctcaaatcctggagaacctggaagtaggggaagtagtttctctgctgcaggttcactttgcagctatgagtcagcagagggttccataagaagggatcctattcttctaggaagcaaccttactggtgaagggaacctcctgattggaagacaagattcaaccagctcccaaactagttcaatgcctggcaattttccagccatttcttctccatccaatcattcatcatttaactccaggatcacaggttcaggaaatcattctcagaattctcgcagagatattccagaatcacctttaagaaccactagttcttctaaaaaccttctggaaaccgcagaagttactattgaggagctacatgcagaagctaagatgtgggagaggaatgcacggaaactaatgcttgatctggatatactgaggacagaattttctgatcagtcaaaaaagcaggcaaatttgaatatggagctttcagcagcatatgctgaacgtgatagcttgaagaaagaagttgaacaattaaaagtgtcatttgagagttcagtgatgagacaaacagccagcgaggatttatctcaaggtggagtgtctcatatcgagaaggcattacaagatgaactgaagtttcaaaaagaatccattgccaatctggacctgcagttgaaaaggagccaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

421

Amino Acids

45.94

Weight (kDa)

6.64

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17113 FvH4_6g17113 FvH4_6g17113
malus_domestica	MD12G1103600.v1.1 MD14G1098000.v1.1
prunus_persica	Prupe.7G123700_v2.0.a1 Prupe.7G123700_v2.0.a1
pyrus_communis	pycom12g10210 pycom12g10220 pycom14g09580
rosa_chinensis	RchiOBHm_Chr3g0471201
rosa_laevigata	RLG00000024198
rosa_multiflora	Rmu_co8155386.1_g000001 Rmu_co8183594.1_g000001 Rmu_sc0031310.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410230
rosa_rugosa	Rorug03G0116000 Rorug03G0116100
rosa_samantha	Rh3AG165000 Rh3BG190600 Rh3CG180900 Rh3DG185200
rosa_wichuraiana	Rw3G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	620, 1251
AccB1I	GGYRCC	1 cut(s)	82
AciI	CCGC	4 cut(s)	161, 164, 169, 918
AclWI	GGATC	7 cut(s)	289, 516, 529, 559, 671, 684, 830
AcsI	RAATTY	3 cut(s)	850, 1013, 1042
AcuI	CTGAAG	1 cut(s)	1229
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	307, 672
AhdI	GACNNNNNGTC	1 cut(s)	465
AhlI	ACTAGT	2 cut(s)	755, 890
AjnI	CCWGG	4 cut(s)	589, 598, 766, 818
AloI	GAACNNNNNNTCC	2 cut(s)	814, 846
AluBI	AGCT	8 cut(s)	180, 265, 645, 747, 940, 953, 1057, 1086
AluI	AGCT	8 cut(s)	180, 265, 645, 747, 940, 953, 1057, 1086
Alw26I	GTCTC	4 cut(s)	452, 551, 1132, 1182
AlwI	GGATC	7 cut(s)	289, 516, 529, 559, 671, 684, 830
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	626, 642, 1064
ApoI	RAATTY	3 cut(s)	850, 1013, 1042
Asp700I	GAANNNNTTC	1 cut(s)	841
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	1240
AsuHPI	GGTGA	3 cut(s)	415, 719, 867
AvaII	GGWCC	1 cut(s)	1240
BamHI	GGATCC	2 cut(s)	521, 676
BanI	GGYRCC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	685, 717
BbsI	GAAGAC	2 cut(s)	143, 736
BbvI	GCAGC	3 cut(s)	613, 654, 1076
BccI	CCATC	4 cut(s)	87, 238, 512, 802
BceAI	ACGGC	2 cut(s)	59, 523
BciT130I	CCWGG	4 cut(s)	591, 600, 768, 820
BciVI	GTATCC	1 cut(s)	3
BclI	TGATCA	1 cut(s)	1021
BcoDI	GTCTC	4 cut(s)	452, 551, 1132, 1182
BcuI	ACTAGT	2 cut(s)	755, 890
BfaI	CTAG	3 cut(s)	689, 756, 891
BfmI	CTRYAG	3 cut(s)	312, 627, 1244
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	2 cut(s)	620, 1251
BfuI	GTATCC	1 cut(s)	3
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	4 cut(s)	162, 627, 643, 1065
BlsI	GCNGC	4 cut(s)	163, 628, 644, 1066
Bme1390I	CCNGG	4 cut(s)	591, 600, 768, 820
Bme18I	GGWCC	1 cut(s)	1240
BmeRI	GACNNNNNGTC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	1240
BmiI	GGNNCC	6 cut(s)	84, 523, 664, 678, 716, 1259
BmrFI	CCNGG	4 cut(s)	591, 600, 768, 820
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	2 cut(s)	143, 736
BpmI	CTGGAG	3 cut(s)	339, 612, 802
BpuEI	CTTGAG	1 cut(s)	1149
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	237, 276, 301
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 672
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	4 cut(s)	136, 356, 496, 709
Bse3DI	GCAATG	1 cut(s)	1227
BseBI	CCWGG	4 cut(s)	591, 600, 768, 820
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	237, 276, 301
BseGI	GGATG	4 cut(s)	98, 232, 448, 794
BseLI	CCNNNNNNNGG	2 cut(s)	307, 672
BseMI	GCAATG	1 cut(s)	1227
BseMII	CTCAG	3 cut(s)	77, 860, 995
BseNI	ACTGG	4 cut(s)	136, 356, 496, 709
BseRI	GAGGAG	1 cut(s)	950
BseXI	GCAGC	3 cut(s)	613, 654, 1076
BshFI	GGCC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	26, 525
BslFI	GGGAC	2 cut(s)	110, 403
BslI	CCNNNNNNNGG	2 cut(s)	307, 672
BsmAI	GTCTC	4 cut(s)	452, 551, 1132, 1182
BsmFI	GGGAC	2 cut(s)	110, 403
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	1 cut(s)	25
Bsp143I	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	4 cut(s)	161, 164, 169, 918
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	3 cut(s)	76, 859, 996
BspDI	ATCGAT	1 cut(s)	48
BspLI	GGNNCC	6 cut(s)	84, 523, 664, 678, 716, 1259
BspMAI	CTGCAG	2 cut(s)	631, 1248
BspMI	ACCTGC	2 cut(s)	620, 1251
BspPI	GGATC	7 cut(s)	289, 516, 529, 559, 671, 684, 830
BspT107I	GGYRCC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	1227
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	4 cut(s)	136, 356, 496, 709
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	3 cut(s)	237, 276, 301
BssMI	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
BssT1I	CCWWGG	3 cut(s)	237, 276, 301
Bst2UI	CCWGG	4 cut(s)	591, 600, 768, 820
Bst4CI	ACNGT	2 cut(s)	316, 394
Bst6I	CTCTTC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstC8I	GCNNGC	3 cut(s)	27, 1038, 1150
BstDEI	CTNAG	5 cut(s)	63, 147, 846, 954, 1004
BstDSI	CCRYGG	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	98, 232, 448, 794
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	8 cut(s)	284, 293, 524, 554, 679, 825, 994, 1024
BstMAI	GTCTC	4 cut(s)	452, 551, 1132, 1182
BstMBI	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	1070
BstNI	CCWGG	4 cut(s)	591, 600, 768, 820
BstNSI	RCATGY	1 cut(s)	947
BstSCI	CCNGG	4 cut(s)	589, 598, 766, 818
BstSFI	CTRYAG	3 cut(s)	312, 627, 1244
BstV1I	GCAGC	3 cut(s)	613, 654, 1076
BstV2I	GAAGAC	2 cut(s)	143, 736
BstX2I	RGATCY	4 cut(s)	290, 521, 551, 676
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	4 cut(s)	290, 521, 551, 676
Bsu15I	ATCGAT	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	3
BsuRI	GGCC	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	4 cut(s)	98, 232, 448, 794
BtsIMutI	CAGTG	1 cut(s)	1137
BveI	ACCTGC	2 cut(s)	620, 1251
Cac8I	GCNNGC	3 cut(s)	27, 1038, 1150
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	1240
ClaI	ATCGAT	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	2 cut(s)	277, 944
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	5 cut(s)	63, 147, 846, 954, 1004
DpnI	GATC	8 cut(s)	283, 292, 523, 553, 678, 824, 993, 1023
DpnII	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
DriI	GACNNNNNGTC	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	3 cut(s)	237, 276, 301
Eco47I	GGWCC	1 cut(s)	1240
Eco57I	CTGAAG	1 cut(s)	1229
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	850
EcoRII	CCWGG	4 cut(s)	589, 598, 766, 818
EcoT14I	CCWWGG	3 cut(s)	237, 276, 301
ErhI	CCWWGG	3 cut(s)	237, 276, 301
FaeI	CATG	2 cut(s)	280, 947
FaqI	GGGAC	2 cut(s)	110, 403
FatI	CATG	2 cut(s)	276, 943
FauNDI	CATATG	1 cut(s)	1069
FbaI	TGATCA	1 cut(s)	1021
Fnu4HI	GCNGC	4 cut(s)	162, 627, 643, 1065
FokI	GGATG	4 cut(s)	105, 239, 455, 781
Fsp4HI	GCNGC	4 cut(s)	162, 627, 643, 1065
FspBI	CTAG	3 cut(s)	689, 756, 891
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	162, 627, 643, 1065
GsuI	CTGGAG	3 cut(s)	339, 612, 802
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	26, 525
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	280, 947
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	26, 525
HphI	GGTGA	3 cut(s)	415, 719, 867
Hpy166II	GTNNAC	2 cut(s)	505, 635
Hpy188I	TCNGA	6 cut(s)	205, 328, 517, 551, 849, 1021
Hpy188III	TCNNGA	8 cut(s)	294, 721, 834, 869, 911, 995, 1186, 1238
Hpy8I	GTNNAC	2 cut(s)	505, 635
HpyAV	CCTTC	5 cut(s)	534, 666, 704, 917, 1183
HpyCH4III	ACNGT	2 cut(s)	316, 394
HpyCH4IV	ACGT	1 cut(s)	1078
HpyCH4V	TGCA	6 cut(s)	381, 629, 642, 947, 974, 1246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1070
HpyF3I	CTNAG	5 cut(s)	63, 147, 846, 954, 1004
HpySE526I	ACGT	1 cut(s)	1078
Hsp92II	CATG	2 cut(s)	280, 947
HspAI	GCGC	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
LmnI	GCTCC	5 cut(s)	358, 752, 937, 1054, 1257
Lsp1109I	GCAGC	3 cut(s)	613, 654, 1076
MaeI	CTAG	3 cut(s)	689, 756, 891
MaeII	ACGT	1 cut(s)	1078
MaeIII	GTNAC	1 cut(s)	925
MalI	GATC	8 cut(s)	283, 292, 523, 553, 678, 824, 993, 1023
MboI	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	4 cut(s)	290, 521, 551, 676
MluCI	AATT	7 cut(s)	141, 408, 772, 850, 1013, 1042, 1106
MlyI	GAGTC	4 cut(s)	215, 458, 553, 659
MmeI	TCCRAC	1 cut(s)	306
MroNI	GCCGGC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	841
MseI	TTAA	4 cut(s)	411, 813, 881, 1109
MspI	CCGG	2 cut(s)	26, 525
MspR9I	CCNGG	4 cut(s)	591, 600, 768, 820
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	4 cut(s)	591, 600, 768, 820
MwoI	GCNNNNNNNGC	1 cut(s)	1070
NaeI	GCCGGC	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	276
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	280, 947
NlaIV	GGNNCC	6 cut(s)	84, 523, 664, 678, 716, 1259
NmeAIII	GCCGAG	1 cut(s)	111
NspI	RCATGY	1 cut(s)	947
PctI	GAATGC	1 cut(s)	976
PdiI	GCCGGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	841
PfeI	GAWTC	7 cut(s)	45, 230, 251, 297, 737, 872, 1223
PfoI	TCCNGGA	2 cut(s)	589, 818
PkrI	GCNGC	4 cut(s)	163, 628, 644, 1066
PleI	GAGTC	4 cut(s)	214, 457, 552, 658
PpsI	GAGTC	4 cut(s)	214, 457, 552, 658
Psp6I	CCWGG	4 cut(s)	589, 598, 766, 818
PspGI	CCWGG	4 cut(s)	589, 598, 766, 818
PspN4I	GGNNCC	6 cut(s)	84, 523, 664, 678, 716, 1259
PspPI	GGNCC	1 cut(s)	1240
PstI	CTGCAG	2 cut(s)	631, 1248
PsuI	RGATCY	4 cut(s)	290, 521, 551, 676
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	411, 813, 881, 1109
SatI	GCNGC	4 cut(s)	162, 627, 643, 1065
Sau3AI	GATC	8 cut(s)	281, 290, 521, 551, 676, 822, 991, 1021
Sau96I	GGNCC	1 cut(s)	1240
SchI	GAGTC	4 cut(s)	215, 458, 553, 659
ScrFI	CCNGG	4 cut(s)	591, 600, 768, 820
SfcI	CTRYAG	3 cut(s)	312, 627, 1244
SinI	GGWCC	1 cut(s)	1240
SmlI	CTYRAG	1 cut(s)	1164
SmoI	CTYRAG	1 cut(s)	1164
SpeI	ACTAGT	2 cut(s)	755, 890
Sse9I	AATT	7 cut(s)	141, 408, 772, 850, 1013, 1042, 1106
SsiI	CCGC	4 cut(s)	161, 164, 169, 918
SspMI	CTAG	3 cut(s)	689, 756, 891
StyD4I	CCNGG	4 cut(s)	589, 598, 766, 818
StyI	CCWWGG	3 cut(s)	237, 276, 301
TaaI	ACNGT	2 cut(s)	316, 394
TaiI	ACGT	1 cut(s)	1081
TaqI	TCGA	3 cut(s)	48, 152, 1185
TasI	AATT	7 cut(s)	141, 408, 772, 850, 1013, 1042, 1106
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	7 cut(s)	45, 230, 251, 297, 737, 872, 1223
Tru1I	TTAA	4 cut(s)	411, 813, 881, 1109
Tru9I	TTAA	4 cut(s)	411, 813, 881, 1109
TscAI	CASTG	1 cut(s)	1137
TseI	GCWGC	3 cut(s)	626, 642, 1064
TspDTI	ATGAA	3 cut(s)	459, 795, 1218
TspGWI	ACGGA	1 cut(s)	991
TspRI	CASTG	1 cut(s)	1137
VpaK11BI	GGWCC	1 cut(s)	1240
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	3 cut(s)	850, 1013, 1042
XceI	RCATGY	1 cut(s)	947
XcmI	CCANNNNNNNNNTGG	2 cut(s)	121, 1234
XmnI	GAANNNNTTC	1 cut(s)	841
XspI	CTAG	3 cut(s)	689, 756, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.