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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g17113 FvH4_6g17113 FvH4_6g17113 |
| malus_domestica | MD12G1103600.v1.1 MD14G1098000.v1.1 |
| prunus_persica | Prupe.7G123700_v2.0.a1 Prupe.7G123700_v2.0.a1 |
| pyrus_communis | pycom12g10210 pycom12g10220 pycom14g09580 |
| rosa_chinensis | RchiOBHm_Chr3g0471201 |
| rosa_laevigata | RLG00000024198 |
| rosa_multiflora | Rmu_co8155386.1_g000001 Rmu_co8183594.1_g000001 Rmu_sc0031310.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00410230 |
| rosa_rugosa | Rorug03G0116000 Rorug03G0116100 |
| rosa_samantha | Rh3AG165000 Rh3BG190600 Rh3CG180900 Rh3DG185200 |
| rosa_wichuraiana | Rw3G015560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3289 |
| Acc16I | TGCGCA | 1 cut(s) | 170 |
| Acc36I | ACCTGC | 1 cut(s) | 3289 |
| AccB1I | GGYRCC | 1 cut(s) | 3806 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 93, 1258 |
| AccI | GTMKAC | 1 cut(s) | 1316 |
| AccII | CGCG | 4 cut(s) | 1032, 4221, 4253, 4272 |
| AciI | CCGC | 7 cut(s) | 503, 869, 899, 1185, 2197, 3804, 4253 |
| AclWI | GGATC | 3 cut(s) | 285, 972, 1486 |
| AcuI | CTGAAG | 8 cut(s) | 1364, 1914, 2909, 2976, 3138, 3260, 3479, 4185 |
| AfaI | GTAC | 5 cut(s) | 709, 838, 1941, 2256, 4112 |
| AfeI | AGCGCT | 1 cut(s) | 4226 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 70, 93, 307, 1207, 1258, 2116, 2611, 2692 |
| AflIII | ACRYGT | 1 cut(s) | 3347 |
| AjnI | CCWGG | 6 cut(s) | 78, 547, 770, 926, 1251, 3003 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2849, 2881, 3398, 3430 |
| AleI | CACNNNNGTG | 1 cut(s) | 3879 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 41, 73, 766, 798, 1481, 1513 |
| Alw21I | GWGCWC | 4 cut(s) | 1734, 2545, 3610, 3636 |
| Alw26I | GTCTC | 8 cut(s) | 188, 452, 801, 1259, 1508, 1590, 2450, 3723 |
| Alw44I | GTGCAC | 1 cut(s) | 3606 |
| AlwI | GGATC | 3 cut(s) | 285, 972, 1486 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1258, 2999, 3116 |
| Ama87I | CYCGRG | 2 cut(s) | 1136, 2544 |
| Aor51HI | AGCGCT | 1 cut(s) | 4226 |
| AoxI | GGCC | 5 cut(s) | 23, 72, 2400, 3133, 3507 |
| ApaLI | GTGCAC | 1 cut(s) | 3606 |
| ApeKI | GCWGC | 4 cut(s) | 591, 1187, 1384, 2960 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 89, 121, 4266, 4298 |
| AseI | ATTAAT | 2 cut(s) | 777, 2207 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1151, 2009, 3039, 3561 |
| AspLEI | GCGC | 3 cut(s) | 171, 4227, 4272 |
| AspS9I | GGNCC | 4 cut(s) | 73, 2077, 2302, 3841 |
| AsuC2I | CCSGG | 2 cut(s) | 540, 808 |
| AsuHPI | GGTGA | 8 cut(s) | 1337, 1615, 1693, 2044, 2779, 3590, 3839, 3871 |
| AsuII | TTCGAA | 2 cut(s) | 236, 3022 |
| AvaI | CYCGRG | 2 cut(s) | 1136, 2544 |
| AvaII | GGWCC | 3 cut(s) | 2077, 2302, 3841 |
| BaeGI | GKGCMC | 1 cut(s) | 3610 |
| BanI | GGYRCC | 1 cut(s) | 3806 |
| BanII | GRGCYC | 4 cut(s) | 614, 1734, 2545, 3636 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3111, 3143 |
| BbsI | GAAGAC | 6 cut(s) | 225, 685, 2012, 2057, 2909, 3248 |
| Bbv12I | GWGCWC | 4 cut(s) | 1734, 2545, 3610, 3636 |
| BbvCI | CCTCAGC | 1 cut(s) | 2097 |
| BbvI | GCAGC | 4 cut(s) | 603, 1199, 1371, 2947 |
| BccI | CCATC | 8 cut(s) | 238, 1028, 1118, 1628, 2473, 3076, 3565, 4195 |
| BciT130I | CCWGG | 6 cut(s) | 80, 549, 772, 928, 1253, 3005 |
| BciVI | GTATCC | 1 cut(s) | 1769 |
| BclI | TGATCA | 2 cut(s) | 1341, 1650 |
| BcnI | CCSGG | 2 cut(s) | 540, 808 |
| BcoDI | GTCTC | 8 cut(s) | 188, 452, 801, 1259, 1508, 1590, 2450, 3723 |
| BfaI | CTAG | 6 cut(s) | 1691, 1964, 2132, 2279, 2987, 4196 |
| BfmI | CTRYAG | 6 cut(s) | 123, 1202, 1310, 1605, 3566, 3588 |
| BfoI | RGCGCY | 1 cut(s) | 4228 |
| BfuAI | ACCTGC | 1 cut(s) | 3289 |
| BfuI | GTATCC | 1 cut(s) | 1769 |
| BglII | AGATCT | 4 cut(s) | 1645, 2761, 3454, 3489 |
| BisI | GCNGC | 6 cut(s) | 592, 870, 1188, 1385, 2961, 3805 |
| BlpI | GCTNAGC | 3 cut(s) | 2216, 3144, 4266 |
| BlsI | GCNGC | 6 cut(s) | 593, 871, 1189, 1386, 2962, 3806 |
| BmcAI | AGTACT | 1 cut(s) | 1941 |
| Bme1390I | CCNGG | 8 cut(s) | 80, 540, 549, 772, 808, 928, 1253, 3005 |
| Bme18I | GGWCC | 3 cut(s) | 2077, 2302, 3841 |
| BmeT110I | CYCGRG | 2 cut(s) | 1136, 2544 |
| BmgT120I | GGNCC | 4 cut(s) | 73, 2077, 2302, 3841 |
| BmiI | GGNNCC | 5 cut(s) | 84, 613, 2078, 3808, 3843 |
| BmrFI | CCNGG | 8 cut(s) | 80, 540, 549, 772, 808, 928, 1253, 3005 |
| BmrI | ACTGGG | 1 cut(s) | 141 |
| BmuI | ACTGGG | 1 cut(s) | 141 |
| BpiI | GAAGAC | 6 cut(s) | 225, 685, 2012, 2057, 2909, 3248 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1119, 1151, 3476, 3508 |
| BpmI | CTGGAG | 5 cut(s) | 62, 339, 1235, 2096, 2684 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1745, 2097 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 2216, 3144, 4266 |
| Bpu14I | TTCGAA | 2 cut(s) | 236, 3022 |
| BpuEI | CTTGAG | 5 cut(s) | 1094, 2048, 3705, 3707, 4168 |
| BpuMI | CCSGG | 2 cut(s) | 540, 808 |
| Bsa29I | ATCGAT | 1 cut(s) | 976 |
| BsaAI | YACGTR | 1 cut(s) | 2351 |
| BsaI | GGTCTC | 1 cut(s) | 188 |
| BsaJI | CCNNGG | 5 cut(s) | 276, 301, 548, 1446, 4302 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1481, 1511, 2684, 2714 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 70, 93, 307, 1207, 1258, 2116, 2611, 2692 |
| Bse1I | ACTGG | 5 cut(s) | 136, 356, 1101, 1800, 2304 |
| Bse3DI | GCAATG | 2 cut(s) | 1089, 1711 |
| BseBI | CCWGG | 6 cut(s) | 80, 549, 772, 928, 1253, 3005 |
| BseCI | ATCGAT | 1 cut(s) | 976 |
| BseDI | CCNNGG | 5 cut(s) | 276, 301, 548, 1446, 4302 |
| BseGI | GGATG | 7 cut(s) | 297, 871, 1129, 3011, 3094, 3394, 3982 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 70, 93, 307, 1207, 1258, 2116, 2611, 2692 |
| BseMI | GCAATG | 2 cut(s) | 1089, 1711 |
| BseNI | ACTGG | 5 cut(s) | 136, 356, 1101, 1800, 2304 |
| BseRI | GAGGAG | 3 cut(s) | 1892, 2627, 2813 |
| BseSI | GKGCMC | 1 cut(s) | 3610 |
| BseXI | GCAGC | 4 cut(s) | 603, 1199, 1371, 2947 |
| BseYI | CCCAGC | 1 cut(s) | 1984 |
| BsgI | GTGCAG | 2 cut(s) | 400, 2343 |
| Bsh1236I | CGCG | 4 cut(s) | 1032, 4221, 4253, 4272 |
| BshFI | GGCC | 5 cut(s) | 25, 74, 2402, 3135, 3509 |
| BshNI | GGYRCC | 1 cut(s) | 3806 |
| BshVI | ATCGAT | 1 cut(s) | 976 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1734, 2545, 3610, 3636 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1136, 2544 |
| BsiSI | CCGG | 3 cut(s) | 294, 540, 808 |
| BslFI | GGGAC | 3 cut(s) | 110, 1183, 3827 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 70, 93, 307, 1207, 1258, 2116, 2611, 2692 |
| BsmAI | GTCTC | 8 cut(s) | 188, 452, 801, 1259, 1508, 1590, 2450, 3723 |
| BsmBI | CGTCTC | 1 cut(s) | 452 |
| BsmFI | GGGAC | 3 cut(s) | 110, 1183, 3827 |
| BsmI | GAATGC | 6 cut(s) | 928, 1084, 1151, 1600, 1876, 3870 |
| BsnI | GGCC | 5 cut(s) | 25, 74, 2402, 3135, 3509 |
| Bso31I | GGTCTC | 1 cut(s) | 188 |
| BsoBI | CYCGRG | 2 cut(s) | 1136, 2544 |
| Bsp119I | TTCGAA | 2 cut(s) | 236, 3022 |
| Bsp1286I | GDGCHC | 5 cut(s) | 614, 1734, 2545, 3610, 3636 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 2216, 3144, 4266 |
| Bsp19I | CCATGG | 1 cut(s) | 276 |
| Bsp68I | TCGCGA | 1 cut(s) | 4221 |
| BspACI | CCGC | 7 cut(s) | 503, 869, 899, 1185, 2197, 3804, 4253 |
| BspANI | GGCC | 5 cut(s) | 25, 74, 2402, 3135, 3509 |
| BspDI | ATCGAT | 1 cut(s) | 976 |
| BspFNI | CGCG | 4 cut(s) | 1032, 4221, 4253, 4272 |
| BspHI | TCATGA | 5 cut(s) | 496, 1462, 2968, 3997, 4284 |
| BspLI | GGNNCC | 5 cut(s) | 84, 613, 2078, 3808, 3843 |
| BspMAI | CTGCAG | 4 cut(s) | 1206, 1609, 3570, 3592 |
| BspMI | ACCTGC | 1 cut(s) | 3289 |
| BspPI | GGATC | 3 cut(s) | 285, 972, 1486 |
| BspT104I | TTCGAA | 2 cut(s) | 236, 3022 |
| BspT107I | GGYRCC | 1 cut(s) | 3806 |
| BspTNI | GGTCTC | 1 cut(s) | 188 |
| BsrDI | GCAATG | 2 cut(s) | 1089, 1711 |
| BsrI | ACTGG | 5 cut(s) | 136, 356, 1101, 1800, 2304 |
| BssECI | CCNNGG | 5 cut(s) | 276, 301, 548, 1446, 4302 |
| BssT1I | CCWWGG | 3 cut(s) | 276, 301, 4302 |
| Bst2UI | CCWGG | 6 cut(s) | 80, 549, 772, 928, 1253, 3005 |
| Bst4CI | ACNGT | 6 cut(s) | 182, 1314, 1447, 2340, 3612, 3878 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1069, 1393, 3614 |
| BstBAI | YACGTR | 1 cut(s) | 2351 |
| BstBI | TTCGAA | 2 cut(s) | 236, 3022 |
| BstC8I | GCNNGC | 4 cut(s) | 27, 990, 3150, 4223 |
| BstDSI | CCRYGG | 2 cut(s) | 276, 1446 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 305, 2114, 2609, 2690 |
| BstF5I | GGATG | 7 cut(s) | 297, 871, 1129, 3011, 3094, 3394, 3982 |
| BstFNI | CGCG | 4 cut(s) | 1032, 4221, 4253, 4272 |
| BstH2I | RGCGCY | 1 cut(s) | 4228 |
| BstHHI | GCGC | 3 cut(s) | 171, 4227, 4272 |
| BstMAI | GTCTC | 8 cut(s) | 188, 452, 801, 1259, 1508, 1590, 2450, 3723 |
| BstNI | CCWGG | 6 cut(s) | 80, 549, 772, 928, 1253, 3005 |
| BstNSI | RCATGY | 1 cut(s) | 899 |
| BstSCI | CCNGG | 8 cut(s) | 78, 538, 547, 770, 806, 926, 1251, 3003 |
| BstSFI | CTRYAG | 6 cut(s) | 123, 1202, 1310, 1605, 3566, 3588 |
| BstSLI | GKGCMC | 1 cut(s) | 3610 |
| BstUI | CGCG | 4 cut(s) | 1032, 4221, 4253, 4272 |
| BstV1I | GCAGC | 4 cut(s) | 603, 1199, 1371, 2947 |
| BstV2I | GAAGAC | 6 cut(s) | 225, 685, 2012, 2057, 2909, 3248 |
| BstX2I | RGATCY | 5 cut(s) | 290, 1645, 2761, 3454, 3489 |
| BstYI | RGATCY | 5 cut(s) | 290, 1645, 2761, 3454, 3489 |
| Bsu15I | ATCGAT | 1 cut(s) | 976 |
| BsuI | GTATCC | 1 cut(s) | 1769 |
| BsuRI | GGCC | 5 cut(s) | 25, 74, 2402, 3135, 3509 |
| BsuTUI | ATCGAT | 1 cut(s) | 976 |
| BtgI | CCRYGG | 2 cut(s) | 276, 1446 |
| BtgZI | GCGATG | 2 cut(s) | 572, 1047 |
| BtsCI | GGATG | 7 cut(s) | 297, 871, 1129, 3011, 3094, 3394, 3982 |
| BtsI | GCAGTG | 2 cut(s) | 168, 2537 |
| BtsIMutI | CAGTG | 9 cut(s) | 168, 191, 445, 840, 1108, 1660, 1807, 2537, 3874 |
| BtuMI | TCGCGA | 1 cut(s) | 4221 |
| BveI | ACCTGC | 1 cut(s) | 3289 |
| Cac8I | GCNNGC | 4 cut(s) | 27, 990, 3150, 4223 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1258, 2999, 3116 |
| CciI | TCATGA | 5 cut(s) | 496, 1462, 2968, 3997, 4284 |
| CfoI | GCGC | 3 cut(s) | 171, 4227, 4272 |
| Cfr13I | GGNCC | 4 cut(s) | 73, 2077, 2302, 3841 |
| ClaI | ATCGAT | 1 cut(s) | 976 |
| Csp6I | GTAC | 5 cut(s) | 708, 837, 1940, 2255, 4111 |
| CviQI | GTAC | 5 cut(s) | 708, 837, 1940, 2255, 4111 |
| DraI | TTTAAA | 2 cut(s) | 1374, 4035 |
| Ecl136II | GAGCTC | 3 cut(s) | 1732, 2543, 3634 |
| Eco130I | CCWWGG | 3 cut(s) | 276, 301, 4302 |
| Eco147I | AGGCCT | 3 cut(s) | 25, 3135, 3509 |
| Eco24I | GRGCYC | 4 cut(s) | 614, 1734, 2545, 3636 |
| Eco31I | GGTCTC | 1 cut(s) | 188 |
| Eco32I | GATATC | 1 cut(s) | 2170 |
| Eco47I | GGWCC | 3 cut(s) | 2077, 2302, 3841 |
| Eco47III | AGCGCT | 1 cut(s) | 4226 |
| Eco53kI | GAGCTC | 3 cut(s) | 1732, 2543, 3634 |
| Eco57I | CTGAAG | 8 cut(s) | 1364, 1914, 2909, 2976, 3138, 3260, 3479, 4185 |
| Eco88I | CYCGRG | 2 cut(s) | 1136, 2544 |
| EcoICRI | GAGCTC | 3 cut(s) | 1732, 2543, 3634 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 305, 2114, 2609, 2690 |
| EcoO109I | RGGNCCY | 2 cut(s) | 73, 3841 |
| EcoRI | GAATTC | 6 cut(s) | 789, 802, 2230, 2422, 2632, 2809 |
| EcoRII | CCWGG | 6 cut(s) | 78, 547, 770, 926, 1251, 3003 |
| EcoRV | GATATC | 1 cut(s) | 2170 |
| EcoT14I | CCWWGG | 3 cut(s) | 276, 301, 4302 |
| EcoT38I | GRGCYC | 4 cut(s) | 614, 1734, 2545, 3636 |
| ErhI | CCWWGG | 3 cut(s) | 276, 301, 4302 |
| Esp3I | CGTCTC | 1 cut(s) | 452 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2254, 2286, 4044, 4076, 4086, 4118 |
| FaqI | GGGAC | 3 cut(s) | 110, 1183, 3827 |
| FauNDI | CATATG | 1 cut(s) | 1021 |
| FbaI | TGATCA | 2 cut(s) | 1341, 1650 |
| FblI | GTMKAC | 1 cut(s) | 1316 |
| Fnu4HI | GCNGC | 6 cut(s) | 592, 870, 1188, 1385, 2961, 3805 |
| FokI | GGATG | 7 cut(s) | 284, 878, 1136, 2998, 3101, 3401, 3989 |
| FriOI | GRGCYC | 4 cut(s) | 614, 1734, 2545, 3636 |
| Fsp4HI | GCNGC | 6 cut(s) | 592, 870, 1188, 1385, 2961, 3805 |
| FspBI | CTAG | 6 cut(s) | 1691, 1964, 2132, 2279, 2987, 4196 |
| FspI | TGCGCA | 1 cut(s) | 170 |
| GlaI | GCGC | 3 cut(s) | 170, 4226, 4271 |
| GluI | GCNGC | 6 cut(s) | 592, 870, 1188, 1385, 2961, 3805 |
| GsaI | CCCAGC | 1 cut(s) | 1988 |
| GsuI | CTGGAG | 5 cut(s) | 62, 339, 1235, 2096, 2684 |
| HaeII | RGCGCY | 1 cut(s) | 4228 |
| HaeIII | GGCC | 5 cut(s) | 25, 74, 2402, 3135, 3509 |
| HapII | CCGG | 3 cut(s) | 294, 540, 808 |
| HhaI | GCGC | 3 cut(s) | 171, 4227, 4272 |
| Hin6I | GCGC | 3 cut(s) | 169, 4225, 4270 |
| HinP1I | GCGC | 3 cut(s) | 169, 4225, 4270 |
| HincII | GTYRAC | 2 cut(s) | 1317, 3174 |
| HindII | GTYRAC | 2 cut(s) | 1317, 3174 |
| HindIII | AAGCTT | 6 cut(s) | 263, 1376, 1742, 1883, 2024, 3269 |
| HpaII | CCGG | 3 cut(s) | 294, 540, 808 |
| HphI | GGTGA | 8 cut(s) | 1337, 1615, 1693, 2044, 2779, 3590, 3839, 3871 |
| Hpy166II | GTNNAC | 9 cut(s) | 189, 584, 1317, 1532, 1684, 2035, 2297, 3174, 3608 |
| Hpy8I | GTNNAC | 9 cut(s) | 189, 584, 1317, 1532, 1684, 2035, 2297, 3174, 3608 |
| Hpy99I | CGWCG | 1 cut(s) | 4152 |
| HpyCH4III | ACNGT | 6 cut(s) | 182, 1314, 1447, 2340, 3612, 3878 |
| HpyCH4IV | ACGT | 6 cut(s) | 1766, 2009, 2350, 3349, 3535, 4017 |
| HpySE526I | ACGT | 6 cut(s) | 1766, 2009, 2350, 3349, 3535, 4017 |
| HspAI | GCGC | 3 cut(s) | 169, 4225, 4270 |
| Ksp22I | TGATCA | 2 cut(s) | 1341, 1650 |
| LmnI | GCTCC | 7 cut(s) | 358, 617, 1006, 1255, 2275, 2540, 2738 |
| Lsp1109I | GCAGC | 4 cut(s) | 603, 1199, 1371, 2947 |
| MaeI | CTAG | 6 cut(s) | 1691, 1964, 2132, 2279, 2987, 4196 |
| MaeII | ACGT | 6 cut(s) | 1766, 2009, 2350, 3349, 3535, 4017 |
| MaeIII | GTNAC | 6 cut(s) | 877, 891, 1843, 2785, 3126, 3745 |
| MfeI | CAATTG | 4 cut(s) | 114, 141, 1269, 1391 |
| MflI | RGATCY | 5 cut(s) | 290, 1645, 2761, 3454, 3489 |
| MhlI | GDGCHC | 5 cut(s) | 614, 1734, 2545, 3610, 3636 |
| MlyI | GAGTC | 9 cut(s) | 239, 458, 562, 593, 1492, 1592, 1844, 2452, 3179 |
| MmeI | TCCRAC | 2 cut(s) | 1188, 2130 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1151, 2009, 3039, 3561 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1625, 2477, 3320, 3879, 4134, 4140 |
| MspA1I | CMGCKG | 3 cut(s) | 1384, 3182, 3670 |
| MspI | CCGG | 3 cut(s) | 294, 540, 808 |
| MspR9I | CCNGG | 8 cut(s) | 80, 540, 549, 772, 808, 928, 1253, 3005 |
| MunI | CAATTG | 4 cut(s) | 114, 141, 1269, 1391 |
| Mva1269I | GAATGC | 6 cut(s) | 928, 1084, 1151, 1600, 1876, 3870 |
| MvaI | CCWGG | 6 cut(s) | 80, 549, 772, 928, 1253, 3005 |
| MvnI | CGCG | 4 cut(s) | 1032, 4221, 4253, 4272 |
| NciI | CCSGG | 2 cut(s) | 540, 808 |
| NcoI | CCATGG | 1 cut(s) | 276 |
| NdeI | CATATG | 1 cut(s) | 1021 |
| NlaIV | GGNNCC | 5 cut(s) | 84, 613, 2078, 3808, 3843 |
| NmeAIII | GCCGAG | 2 cut(s) | 581, 3643 |
| NmuCI | GTSAC | 3 cut(s) | 1843, 2785, 3745 |
| NruI | TCGCGA | 1 cut(s) | 4221 |
| NsbI | TGCGCA | 1 cut(s) | 170 |
| NspI | RCATGY | 1 cut(s) | 899 |
| NspV | TTCGAA | 2 cut(s) | 236, 3022 |
| OliI | CACNNNNGTG | 1 cut(s) | 3879 |
| PaeR7I | CTCGAG | 2 cut(s) | 1136, 2544 |
| PagI | TCATGA | 5 cut(s) | 496, 1462, 2968, 3997, 4284 |
| PaqCI | CACCTGC | 1 cut(s) | 3289 |
| PceI | AGGCCT | 3 cut(s) | 25, 3135, 3509 |
| PctI | GAATGC | 6 cut(s) | 928, 1084, 1151, 1600, 1876, 3870 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1151, 2009, 3039, 3561 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 93, 1258 |
| PfoI | TCCNGGA | 5 cut(s) | 538, 770, 806, 1251, 3003 |
| PkrI | GCNGC | 6 cut(s) | 593, 871, 1189, 1386, 2962, 3806 |
| PleI | GAGTC | 9 cut(s) | 238, 457, 561, 593, 1491, 1591, 1843, 2451, 3178 |
| PpsI | GAGTC | 9 cut(s) | 238, 457, 561, 593, 1491, 1591, 1843, 2451, 3178 |
| Ppu21I | YACGTR | 1 cut(s) | 2351 |
| PpuMI | RGGWCCY | 1 cut(s) | 3841 |
| PshBI | ATTAAT | 2 cut(s) | 777, 2207 |
| Psp124BI | GAGCTC | 3 cut(s) | 1734, 2545, 3636 |
| Psp5II | RGGWCCY | 1 cut(s) | 3841 |
| Psp6I | CCWGG | 6 cut(s) | 78, 547, 770, 926, 1251, 3003 |
| PspFI | CCCAGC | 1 cut(s) | 1984 |
| PspGI | CCWGG | 6 cut(s) | 78, 547, 770, 926, 1251, 3003 |
| PspN4I | GGNNCC | 5 cut(s) | 84, 613, 2078, 3808, 3843 |
| PspPI | GGNCC | 4 cut(s) | 73, 2077, 2302, 3841 |
| PspPPI | RGGWCCY | 1 cut(s) | 3841 |
| PstI | CTGCAG | 4 cut(s) | 1206, 1609, 3570, 3592 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1258, 2999, 3116 |
| PsuI | RGATCY | 5 cut(s) | 290, 1645, 2761, 3454, 3489 |
| PvuII | CAGCTG | 3 cut(s) | 1384, 3182, 3670 |
| RruI | TCGCGA | 1 cut(s) | 4221 |
| RsaI | GTAC | 5 cut(s) | 709, 838, 1941, 2256, 4112 |
| RsaNI | GTAC | 5 cut(s) | 708, 837, 1940, 2255, 4111 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1625, 2477, 3320, 3879, 4134, 4140 |
| SacI | GAGCTC | 3 cut(s) | 1734, 2545, 3636 |
| SalI | GTCGAC | 1 cut(s) | 1315 |
| SatI | GCNGC | 6 cut(s) | 592, 870, 1188, 1385, 2961, 3805 |
| Sau96I | GGNCC | 4 cut(s) | 73, 2077, 2302, 3841 |
| ScaI | AGTACT | 1 cut(s) | 1941 |
| SchI | GAGTC | 9 cut(s) | 239, 458, 562, 593, 1492, 1592, 1844, 2452, 3179 |
| ScrFI | CCNGG | 8 cut(s) | 80, 540, 549, 772, 808, 928, 1253, 3005 |
| SduI | GDGCHC | 5 cut(s) | 614, 1734, 2545, 3610, 3636 |
| SfcI | CTRYAG | 6 cut(s) | 123, 1202, 1310, 1605, 3566, 3588 |
| Sfr274I | CTCGAG | 2 cut(s) | 1136, 2544 |
| SfuI | TTCGAA | 2 cut(s) | 236, 3022 |
| SinI | GGWCC | 3 cut(s) | 2077, 2302, 3841 |
| SlaI | CTCGAG | 2 cut(s) | 1136, 2544 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1625, 2477, 3320, 3879, 4134, 4140 |
| SmlI | CTYRAG | 7 cut(s) | 1073, 1136, 2027, 2544, 3686, 3720, 4183 |
| SmoI | CTYRAG | 7 cut(s) | 1073, 1136, 2027, 2544, 3686, 3720, 4183 |
| SseBI | AGGCCT | 3 cut(s) | 25, 3135, 3509 |
| SsiI | CCGC | 7 cut(s) | 503, 869, 899, 1185, 2197, 3804, 4253 |
| SspI | AATATT | 2 cut(s) | 1231, 3100 |
| SspMI | CTAG | 6 cut(s) | 1691, 1964, 2132, 2279, 2987, 4196 |
| SstI | GAGCTC | 3 cut(s) | 1734, 2545, 3636 |
| StuI | AGGCCT | 3 cut(s) | 25, 3135, 3509 |
| StyD4I | CCNGG | 8 cut(s) | 78, 538, 547, 770, 806, 926, 1251, 3003 |
| StyI | CCWWGG | 3 cut(s) | 276, 301, 4302 |
| TaaI | ACNGT | 6 cut(s) | 182, 1314, 1447, 2340, 3612, 3878 |
| TaiI | ACGT | 6 cut(s) | 1769, 2012, 2353, 3352, 3538, 4020 |
| TatI | WGTACW | 2 cut(s) | 707, 1939 |
| TauI | GCSGC | 2 cut(s) | 872, 3807 |
| TscAI | CASTG | 9 cut(s) | 168, 191, 445, 847, 1108, 1660, 1807, 2537, 3881 |
| TseFI | GTSAC | 3 cut(s) | 1843, 2785, 3745 |
| TseI | GCWGC | 4 cut(s) | 591, 1187, 1384, 2960 |
| Tsp45I | GTSAC | 3 cut(s) | 1843, 2785, 3745 |
| TspGWI | ACGGA | 5 cut(s) | 189, 735, 1730, 3939, 3999 |
| TspRI | CASTG | 9 cut(s) | 168, 191, 445, 847, 1108, 1660, 1807, 2537, 3881 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 93, 1258 |
| VneI | GTGCAC | 1 cut(s) | 3606 |
| VpaK11BI | GGWCC | 3 cut(s) | 2077, 2302, 3841 |
| VspI | ATTAAT | 2 cut(s) | 777, 2207 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 305, 2114, 2609, 2690 |
| XbaI | TCTAGA | 1 cut(s) | 4195 |
| XceI | RCATGY | 1 cut(s) | 899 |
| XhoI | CTCGAG | 2 cut(s) | 1136, 2544 |
| XmiI | GTMKAC | 1 cut(s) | 1316 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1151, 2009, 3039, 3561 |
| XspI | CTAG | 6 cut(s) | 1691, 1964, 2132, 2279, 2987, 4196 |
| ZrmI | AGTACT | 1 cut(s) | 1941 |