Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8155386.1

Orthogroup ID

OG0008872

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 656

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8155386.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ctatgagtcagcagagggttccataagaagggatcctattcttctaggaagcaaccttactggtgaagggaacctcctgattggaagacaagattcaaccagctctcaaactagttcaatgcctggcaattttccagccatttcttctccatccaatcattcatcatttaactccaggatcacaggttcaggaaatcattctcagaattctcgcagagatattccagaatcacctttaagaaccactagttcttctaaaaaccttctggaaaccgcagaagttactattgaggagctacatgcagaagctaagatgtgggagaggaatgcacggaaactaatgcttgatctggatatactgaggacagaattttctgatcagtcaaaaaagcaggcaaatttgaatatggagctttcagcagcatatgctgaacgtgatagcttgaagaaagaagttgaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

153

Amino Acids

16.91

Weight (kDa)

5.47

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17113 FvH4_6g17113 FvH4_6g17113
malus_domestica	MD12G1103600.v1.1 MD14G1098000.v1.1
prunus_persica	Prupe.7G123700_v2.0.a1 Prupe.7G123700_v2.0.a1
pyrus_communis	pycom12g10210 pycom12g10220 pycom14g09580
rosa_chinensis	RchiOBHm_Chr3g0471201
rosa_laevigata	RLG00000024198
rosa_multiflora	Rmu_co8155386.1_g000001 Rmu_co8183594.1_g000001 Rmu_sc0031310.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410230
rosa_rugosa	Rorug03G0116000 Rorug03G0116100
rosa_samantha	Rh3AG165000 Rh3BG190600 Rh3CG180900 Rh3DG185200
rosa_wichuraiana	Rw3G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	3 cut(s)	27, 40, 186
AcsI	RAATTY	3 cut(s)	206, 369, 398
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	5 cut(s)	97, 118, 404, 446, 459
AhlI	ACTAGT	2 cut(s)	111, 246
AjnI	CCWGG	2 cut(s)	122, 174
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	103, 296, 309, 413, 442
AluI	AGCT	5 cut(s)	103, 296, 309, 413, 442
AlwI	GGATC	3 cut(s)	27, 40, 186
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	3 cut(s)	206, 369, 398
Asp700I	GAANNNNTTC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	75, 223
BamHI	GGATCC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	124, 176
BclI	TGATCA	1 cut(s)	377
BcuI	ACTAGT	2 cut(s)	111, 246
BfaI	CTAG	3 cut(s)	45, 112, 247
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	124, 176
BmiI	GGNNCC	3 cut(s)	20, 34, 72
BmrFI	CCNGG	2 cut(s)	124, 176
BpiI	GAAGAC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	124, 176
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	216, 351
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	32, 178, 347, 377
BspACI	CCGC	1 cut(s)	274
BspCNI	CTCAG	2 cut(s)	215, 352
BspLI	GGNNCC	3 cut(s)	20, 34, 72
BspPI	GGATC	3 cut(s)	27, 40, 186
BsrI	ACTGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	32, 178, 347, 377
Bst2UI	CCWGG	2 cut(s)	124, 176
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	3 cut(s)	202, 310, 360
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	4 cut(s)	35, 181, 350, 380
BstMBI	GATC	4 cut(s)	32, 178, 347, 377
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNI	CCWGG	2 cut(s)	124, 176
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	122, 174
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	394
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	6 cut(s)	103, 138, 296, 309, 413, 442
CviKI_1	RGCY	6 cut(s)	103, 138, 296, 309, 413, 442
DdeI	CTNAG	3 cut(s)	202, 310, 360
DpnI	GATC	4 cut(s)	34, 180, 349, 379
DpnII	GATC	4 cut(s)	32, 178, 347, 377
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	122, 174
FaeI	CATG	1 cut(s)	303
FaiI	YATR	7 cut(s)	4, 24, 301, 357, 408, 425, 427
FatI	CATG	1 cut(s)	299
FauNDI	CATATG	1 cut(s)	425
FbaI	TGATCA	1 cut(s)	377
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	3 cut(s)	45, 112, 247
GluI	GCNGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	158
Hin1II	CATG	1 cut(s)	303
HinfI	GANTC	3 cut(s)	6, 93, 228
HphI	GGTGA	2 cut(s)	75, 223
Hpy188I	TCNGA	2 cut(s)	205, 377
Hpy188III	TCNNGA	5 cut(s)	77, 190, 225, 267, 351
HpyAV	CCTTC	3 cut(s)	22, 60, 273
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	303, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	3 cut(s)	202, 310, 360
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	377
Kzo9I	GATC	4 cut(s)	32, 178, 347, 377
LmnI	GCTCC	2 cut(s)	293, 410
Lsp1109I	GCAGC	1 cut(s)	432
MaeI	CTAG	3 cut(s)	45, 112, 247
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	34, 180, 349, 379
MboI	GATC	4 cut(s)	32, 178, 347, 377
MboII	GAAGA	5 cut(s)	33, 97, 136, 244, 458
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	4 cut(s)	128, 206, 369, 398
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	8, 84, 284, 316, 355
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	2 cut(s)	169, 237
MspR9I	CCNGG	2 cut(s)	124, 176
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	2 cut(s)	124, 176
MwoI	GCNNNNNNNGC	1 cut(s)	426
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	4 cut(s)	32, 178, 347, 377
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	3 cut(s)	20, 34, 72
NspI	RCATGY	1 cut(s)	303
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	93, 228
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	122, 174
PspGI	CCWGG	2 cut(s)	122, 174
PspN4I	GGNNCC	3 cut(s)	20, 34, 72
PsuI	RGATCY	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	169, 237
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	4 cut(s)	32, 178, 347, 377
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	124, 176
SpeI	ACTAGT	2 cut(s)	111, 246
Sse9I	AATT	4 cut(s)	128, 206, 369, 398
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	3 cut(s)	45, 112, 247
StyD4I	CCNGG	2 cut(s)	122, 174
TaiI	ACGT	1 cut(s)	437
TasI	AATT	4 cut(s)	128, 206, 369, 398
TfiI	GAWTC	2 cut(s)	93, 228
Tru1I	TTAA	2 cut(s)	169, 237
Tru9I	TTAA	2 cut(s)	169, 237
TseI	GCWGC	1 cut(s)	420
TspDTI	ATGAA	1 cut(s)	151
TspGWI	ACGGA	1 cut(s)	347
XapI	RAATTY	3 cut(s)	206, 369, 398
XceI	RCATGY	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	3 cut(s)	45, 112, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.