Rorug03G0116100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008872
Physical Location & Seq
Reverse (-)
9448365 .. 9450799
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0116100.1

Sequence Viewer

Length: 432 bp
ATGGAGGCTACCGAGTGGAAGAAACGTTATGCAGGGATTTCTTTGCTAGCAGTGATTGCCGAGAAGTGCTCAGATGAAATGGCTACCGAGTGGAAGAAACGTTATGCAGGGATTTCTTTGCTAGCAGTGATTGCCGAGAAGTGCTCAGATGAAATGCCTACAAATCTGGTCCAGACAATGCAAATTCTCTATCATTTGAAGATTTTCTATGCACTGGACGCTGCACTTGACCAACACCGGAACCCAACAGTCAAGTTGCAGGATAAACTTAATATGCTACAAGCTCGAATTGATTTTTTGGAGAACAAAGAGAAGAGAGGCACAGATCAAAATGGACAGGTTCCAGATGCAACTAGTGACCATGAAATTCGGAGAGAGTCTGTAGGAGAAGAAAGGAATCCAGATTCAAGCAGTGATAGAGCAATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT-C2

Protein Analysis

143

Amino Acids

16.27

Weight (kDa)

5.43

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 25, 100
AcsI RAATTY 2 cut(s) 183, 366
AgsI TTSAA 2 cut(s) 199, 408
AhlI ACTAGT 1 cut(s) 353
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 2 cut(s) 71, 146
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 183, 366
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 169
AsuNHI GCTAGC 2 cut(s) 46, 121
AvaII GGWCC 1 cut(s) 169
Bbv12I GWGCWC 2 cut(s) 71, 146
BbvI GCAGC 1 cut(s) 208
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 3 cut(s) 47, 122, 354
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 242, 342
BmsI GCATC 1 cut(s) 337
BmtI GCTAGC 2 cut(s) 50, 125
BplI GAGNNNNNCTC 4 cut(s) 53, 85, 128, 160
BsaWI WCCGGW 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 429
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 84, 159
BseNI ACTGG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 71, 146
BsiSI CCGG 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 71, 146
Bsp143I GATC 1 cut(s) 325
BspCNI CTCAG 2 cut(s) 83, 158
BspLI GGNNCC 2 cut(s) 242, 342
BspOI GCTAGC 2 cut(s) 50, 125
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 1 cut(s) 219
BssMI GATC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 308
BstAPI GCANNNNNTGC 2 cut(s) 56, 131
BstC8I GCNNGC 2 cut(s) 48, 123
BstDEI CTNAG 2 cut(s) 70, 145
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 3 cut(s) 56, 131, 218
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 208
BtsI GCAGTG 3 cut(s) 57, 132, 418
BtsIMutI CAGTG 4 cut(s) 57, 132, 212, 418
Cac8I GCNNGC 2 cut(s) 48, 123
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 1 cut(s) 227
CviAII CATG 1 cut(s) 362
CviJI RGCY 3 cut(s) 8, 83, 284
CviKI_1 RGCY 3 cut(s) 8, 83, 284
DdeI CTNAG 2 cut(s) 70, 145
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 169
FaeI CATG 1 cut(s) 365
FaiI YATR 5 cut(s) 30, 105, 210, 275, 363
FatI CATG 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 3 cut(s) 47, 122, 354
GluI GCNGC 1 cut(s) 222
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 365
HinfI GANTC 3 cut(s) 377, 397, 404
HpaII CCGG 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 73, 148, 372
Hpy188III TCNNGA 3 cut(s) 172, 344, 401
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 25, 100
HpyCH4V TGCA 7 cut(s) 32, 107, 181, 212, 224, 259, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 131, 218
HpyF3I CTNAG 2 cut(s) 70, 145
HpySE526I ACGT 2 cut(s) 25, 100
Hsp92II CATG 1 cut(s) 365
Kzo9I GATC 1 cut(s) 325
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 47, 122, 354
MaeII ACGT 2 cut(s) 25, 100
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 5 cut(s) 31, 106, 211, 325, 401
MhlI GDGCHC 2 cut(s) 71, 146
MluCI AATT 3 cut(s) 183, 288, 366
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 56, 131, 218
NdeII GATC 1 cut(s) 325
NheI GCTAGC 2 cut(s) 46, 121
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 2 cut(s) 242, 342
NmeAIII GCCGAG 2 cut(s) 85, 160
NmuCI GTSAC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 397, 404
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp1406I AACGTT 2 cut(s) 25, 100
PspN4I GGNNCC 2 cut(s) 242, 342
PspPI GGNCC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 386
SduI GDGCHC 2 cut(s) 71, 146
SetI ASST 4 cut(s) 28, 103, 286, 342
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 169
SpeI ACTAGT 1 cut(s) 353
Sse9I AATT 3 cut(s) 183, 288, 366
SspMI CTAG 3 cut(s) 47, 122, 354
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 28, 103
TaqI TCGA 1 cut(s) 286
TasI AATT 3 cut(s) 183, 288, 366
TfiI GAWTC 2 cut(s) 397, 404
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 4 cut(s) 57, 132, 219, 418
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 90, 165, 378
TspRI CASTG 4 cut(s) 57, 132, 219, 418
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 2 cut(s) 183, 366
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 3 cut(s) 47, 122, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.