Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8183594.1

Orthogroup ID

OG0008872

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 689

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8183594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 689 bp

agctgcaaaaattgcaggaatcagagaacaagttgcaagatatggtgcagcagctggaacaggctctggaagagaaaaaccgtgatgtagagaaggggtcgggtctggaaaaacgaagcctttcggatattgagacagaatacagcagtacattattcgataaagaagaagagattattcaattgagagaaaagctgtctgagtctctcaaagaaagccattctgcagaattgaggtccattaccatgaatggaggtgaaacagatctgatcagacaaattgaagtcttgaaagaaaagttgcaggagctagagacagattgtaatgagctgacggatgaaaaccttgaactcttattcaagcttaaggaagcaaagaacaattctgcagggggacatgcacctgttgatcttcccaccactgagcttttggtggattcttttaccagctttgagtccaaagtgactgaacggaaatcccacatacaaaatgcagaggagaattgcaataagatggtgcttggggagattacgaataatcatgatctttcaattcaagtacttgagagtttaaaaatggaactcgaaattaaagttacagatctggggaaagaattgacagagaaaaggtctgagatagccaaactggaggataacttgctaaccaaagaagaagaaaccagggctcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

229

Amino Acids

26.17

Weight (kDa)

4.62

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17113 FvH4_6g17113 FvH4_6g17113
malus_domestica	MD12G1103600.v1.1 MD14G1098000.v1.1
prunus_persica	Prupe.7G123700_v2.0.a1 Prupe.7G123700_v2.0.a1
pyrus_communis	pycom12g10210 pycom12g10220 pycom14g09580
rosa_chinensis	RchiOBHm_Chr3g0471201
rosa_laevigata	RLG00000024198
rosa_multiflora	Rmu_co8155386.1_g000001 Rmu_co8183594.1_g000001 Rmu_sc0031310.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410230
rosa_rugosa	Rorug03G0116000 Rorug03G0116100
rosa_samantha	Rh3AG165000 Rh3BG190600 Rh3CG180900 Rh3DG185200
rosa_wichuraiana	Rw3G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	150, 560
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	7 cut(s)	181, 283, 291, 349, 360, 551, 556
AjnI	CCWGG	1 cut(s)	679
AluBI	AGCT	8 cut(s)	3, 54, 195, 309, 330, 363, 426, 449
AluI	AGCT	8 cut(s)	3, 54, 195, 309, 330, 363, 426, 449
Alw26I	GTCTC	3 cut(s)	127, 209, 307
AlwNI	CAGNNNCTG	2 cut(s)	54, 66
ApeKI	GCWGC	3 cut(s)	3, 48, 51
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	687
BbvI	GCAGC	2 cut(s)	60, 63
BccI	CCATC	1 cut(s)	507
BciT130I	CCWGG	1 cut(s)	681
BclI	TGATCA	1 cut(s)	269
BcoDI	GTCTC	3 cut(s)	127, 209, 307
BfaI	CTAG	1 cut(s)	310
BfmI	CTRYAG	2 cut(s)	224, 386
BfrI	CTTAAG	1 cut(s)	364
BglII	AGATCT	2 cut(s)	264, 600
BisI	GCNGC	3 cut(s)	4, 49, 52
BlsI	GCNGC	3 cut(s)	5, 50, 53
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	681
BpmI	CTGGAG	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	583
BsaJI	CCNNGG	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	191, 413, 623
BseNI	ACTGG	1 cut(s)	650
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	2 cut(s)	60, 63
BsgI	GTGCAG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	3 cut(s)	127, 209, 307
BsmFI	GGGAC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	264, 269, 408, 543, 600
BspCNI	CTCAG	3 cut(s)	192, 414, 624
BspHI	TCATGA	1 cut(s)	540
BspMAI	CTGCAG	2 cut(s)	228, 390
BspTI	CTTAAG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	5 cut(s)	264, 269, 408, 543, 600
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	65, 164
BstAFI	CTTAAG	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstDEI	CTNAG	3 cut(s)	200, 422, 632
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	5 cut(s)	267, 272, 411, 546, 603
BstMAI	GTCTC	3 cut(s)	127, 209, 307
BstMBI	GATC	5 cut(s)	264, 269, 408, 543, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	2 cut(s)	224, 386
BstV1I	GCAGC	2 cut(s)	60, 63
BstX2I	RGATCY	2 cut(s)	264, 600
BstYI	RGATCY	2 cut(s)	264, 600
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	419
CaiI	CAGNNNCTG	2 cut(s)	54, 66
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	149, 559
CviAII	CATG	3 cut(s)	246, 397, 541
CviQI	GTAC	2 cut(s)	149, 559
DdeI	CTNAG	3 cut(s)	200, 422, 632
DpnI	GATC	5 cut(s)	266, 271, 410, 545, 602
DpnII	GATC	5 cut(s)	264, 269, 408, 543, 600
DraI	TTTAAA	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	65, 164
EarI	CTCTTC	2 cut(s)	65, 164
Eco24I	GRGCYC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	687
FaeI	CATG	3 cut(s)	249, 400, 544
FaiI	YATR	5 cut(s)	43, 247, 398, 484, 542
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	3 cut(s)	245, 396, 540
FbaI	TGATCA	1 cut(s)	269
Fnu4HI	GCNGC	3 cut(s)	4, 49, 52
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	3 cut(s)	4, 49, 52
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	3 cut(s)	4, 49, 52
GsuI	CTGGAG	1 cut(s)	667
Hin1II	CATG	3 cut(s)	249, 400, 544
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	4 cut(s)	19, 202, 436, 454
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	6 cut(s)	24, 126, 201, 269, 274, 633
Hpy188III	TCNNGA	4 cut(s)	67, 106, 288, 541
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	3 cut(s)	200, 422, 632
Hsp92II	CATG	3 cut(s)	249, 400, 544
Ksp22I	TGATCA	1 cut(s)	269
Kzo9I	GATC	5 cut(s)	264, 269, 408, 543, 600
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	2 cut(s)	60, 63
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	462, 594
MalI	GATC	5 cut(s)	266, 271, 410, 545, 602
MboI	GATC	5 cut(s)	264, 269, 408, 543, 600
MboII	GAAGA	6 cut(s)	82, 178, 181, 403, 682, 685
MfeI	CAATTG	1 cut(s)	181
MflI	RGATCY	2 cut(s)	264, 600
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	9 cut(s)	10, 181, 229, 278, 381, 501, 551, 587, 613
MlyI	GAGTC	2 cut(s)	211, 463
MnlI	CCTC	4 cut(s)	227, 247, 489, 642
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	365, 571, 590
MslI	CAYNNNNRTG	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	54
MspCI	CTTAAG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	681
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	5 cut(s)	264, 269, 408, 543, 600
NlaIII	CATG	3 cut(s)	249, 400, 544
NmuCI	GTSAC	1 cut(s)	462
NspI	RCATGY	1 cut(s)	400
PagI	TCATGA	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	19, 436
PkrI	GCNGC	3 cut(s)	5, 50, 53
PleI	GAGTC	2 cut(s)	210, 462
PpsI	GAGTC	2 cut(s)	210, 462
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	2 cut(s)	228, 390
PstNI	CAGNNNCTG	2 cut(s)	54, 66
PsuI	RGATCY	2 cut(s)	264, 600
PvuII	CAGCTG	1 cut(s)	54
RsaI	GTAC	2 cut(s)	150, 560
RsaNI	GTAC	2 cut(s)	149, 559
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	365, 571, 590
SatI	GCNGC	3 cut(s)	4, 49, 52
Sau3AI	GATC	5 cut(s)	264, 269, 408, 543, 600
Sau96I	GGNCC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	560
SchI	GAGTC	2 cut(s)	211, 463
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	1 cut(s)	687
SfcI	CTRYAG	2 cut(s)	224, 386
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	364, 562
SmoI	CTYRAG	2 cut(s)	364, 562
Sse9I	AATT	9 cut(s)	10, 181, 229, 278, 381, 501, 551, 587, 613
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	158, 584
TasI	AATT	9 cut(s)	10, 181, 229, 278, 381, 501, 551, 587, 613
TatI	WGTACW	2 cut(s)	148, 558
TfiI	GAWTC	2 cut(s)	19, 436
Tru1I	TTAA	3 cut(s)	365, 571, 590
Tru9I	TTAA	3 cut(s)	365, 571, 590
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	462
TseI	GCWGC	3 cut(s)	3, 48, 51
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	2 cut(s)	262, 353
TspGWI	ACGGA	2 cut(s)	349, 486
TspRI	CASTG	1 cut(s)	426
Vha464I	CTTAAG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	310
ZrmI	AGTACT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.