Rorug03G0116000

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
9437961 .. 9439682
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0116000.1

Sequence Viewer

Length: 1086 bp
ATGATGAAGTGTTTGCAGAGCTGGCCTGAGCCGATTGTTCGGGTCCAGTCCCTCGCCGAAAGCGGGATAAAAAAAATCCCGGAGCTCTACATCAAGCCCCCTTGCAAACGACCCTCGAATGATCTCGTCCTCGACGATGCCACCGTCAACATCCCGGTCATCGACCTGCAGGCCCTGGCCGGAGACGACCAGAGCCTGCGAGAGACCACGCTGCAGCTAGTCTCGAGCGCCTGTAGGGAGTGGGGGTTCTTCCAGGTGGTGAACCACGGTGTCAGCCACGAGCTGATGAAGCGGGCGAGGGAGACATGGCGGGAGTTCTTCGAGCAGCCGCTGGAGGTGAAGCAGGAGTACTCGAACAACCCGAGCACCTATGAAGGGTACGGAAGCCGGCTCGGAGTGGAGAAGGGGGCTATTCTGGATTGGAGTGACTATTACTTTCTTCATTACATGCCTCCGGAGTTGAGGAAGCCCACCAAGTGGCCTGCTCTCCCATCTTCATGCAGGAATTTGATTGAAGAATATGGTGAGGAAGCTACTAGACTATGTGGAAGACTGATGAAGATGCTATCACTAAACCTTGGGCTAGGGGAAGACTACCTTCTCAATGCTTTTGGAGGAGAAGAGAACGTTGGGGCATGCTTAAGGGTCAATTTCTACCCAAAATGCCCCCAACCGGACCTAACCCTCGGAATCTCGCCACACTCGGACCCCGGTGGGATGACCCTTCTCCTACCCGACGAGGATGTGGCGGGACTTCAAGTTCGTAAAGGTGAAAGTTGGGTGACTGTAAAGCCCGTCCCGAACGCCTTCATTGTCAACATGGGAGATCAAATGCAAGTTCTGAGCAACGCCATATACAAGAGCGTAGAGCATAGAGTGATTGTGAATTCAGTCAAAGACCGAGTTTCTCTGGCCATGTTTTATAACCCCAAAAGCGATTTGCTGATTGAACCGGCCAAGGCTCTCGTCACGAATGACCGGCCGGCTCTCTACCCGGCTATGACGTTCGATGAGTACCGCCTTTACATTAGGACCAAGGGCCTTTGGGGCAAGGCACAAGTTGAATCCTTGAAAACCCATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

361

Amino Acids

40.84

Weight (kDa)

5.68

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 51 - 162 4.9e-33 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 212 - 310 1.7e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
Acc36I ACCTGC 1 cut(s) 174
AccB7I CCANNNNNTGG 1 cut(s) 477
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 6 cut(s) 63, 292, 310, 329, 749, 1018
AclI AACGTT 1 cut(s) 627
AcoI YGGCCR 4 cut(s) 177, 912, 954, 980
AcsI RAATTY 2 cut(s) 505, 886
AdeI CACNNNGTG 1 cut(s) 477
AfaI GTAC 3 cut(s) 350, 380, 1016
AfiI CCNNNNNNNGG 4 cut(s) 63, 375, 477, 673
AflII CTTAAG 1 cut(s) 640
AgsI TTSAA 5 cut(s) 515, 758, 950, 1064, 1072
AjnI CCWGG 2 cut(s) 174, 252
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
AloI GAACNNNNNNTCC 4 cut(s) 230, 262, 744, 776
AluBI AGCT 5 cut(s) 21, 85, 217, 283, 533
AluI AGCT 5 cut(s) 21, 85, 217, 283, 533
Alw21I GWGCWC 2 cut(s) 87, 368
Alw26I GTCTC 4 cut(s) 177, 197, 226, 296
AlwNI CAGNNNCTG 3 cut(s) 175, 196, 331
Ama87I CYCGRG 2 cut(s) 223, 361
Aor13HI TCCGGA 1 cut(s) 454
AoxI GGCC 8 cut(s) 23, 171, 177, 479, 912, 954, 980, 1039
ApeKI GCWGC 3 cut(s) 211, 214, 325
ApoI RAATTY 2 cut(s) 505, 886
ArsI GACNNNNNNTTYG 2 cut(s) 744, 776
Asp700I GAANNNNTTC 1 cut(s) 806
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 6 cut(s) 43, 172, 676, 706, 1032, 1039
AsuC2I CCSGG 4 cut(s) 80, 155, 711, 995
AsuHPI GGTGA 5 cut(s) 271, 349, 536, 782, 793
AvaI CYCGRG 2 cut(s) 223, 361
AvaII GGWCC 4 cut(s) 43, 676, 706, 1032
BalI TGGCCA 1 cut(s) 914
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 332, 364
BauI CACGAG 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 556, 597
Bbv12I GWGCWC 2 cut(s) 87, 368
BbvI GCAGC 3 cut(s) 198, 226, 337
BccI CCATC 1 cut(s) 499
BciT130I CCWGG 2 cut(s) 176, 254
BcnI CCSGG 4 cut(s) 80, 155, 711, 995
BcoDI GTCTC 4 cut(s) 177, 197, 226, 296
BfaI CTAG 3 cut(s) 218, 537, 584
BfmI CTRYAG 3 cut(s) 167, 212, 232
BfoI RGCGCY 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 640
BfuAI ACCTGC 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 1047
BisI GCNGC 4 cut(s) 212, 215, 326, 329
BlsI GCNGC 4 cut(s) 213, 216, 327, 330
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 6 cut(s) 80, 155, 176, 254, 711, 995
Bme18I GGWCC 4 cut(s) 43, 676, 706, 1032
BmeT110I CYCGRG 2 cut(s) 223, 361
BmgT120I GGNCC 6 cut(s) 43, 172, 676, 706, 1032, 1039
BmiI GGNNCC 2 cut(s) 44, 708
BmrFI CCNGG 6 cut(s) 80, 155, 176, 254, 711, 995
BmsI GCATC 2 cut(s) 127, 552
BpiI GAAGAC 2 cut(s) 556, 597
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 27
BpuMI CCSGG 4 cut(s) 80, 155, 711, 995
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 7 cut(s) 174, 265, 577, 685, 709, 957, 1035
BsaWI WCCGGW 2 cut(s) 454, 673
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 375, 477, 673
Bse118I RCCGGY 4 cut(s) 387, 952, 978, 982
Bse1I ACTGG 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 2 cut(s) 176, 254
BseDI CCNNGG 7 cut(s) 174, 265, 577, 685, 709, 957, 1035
BseGI GGATG 3 cut(s) 150, 723, 748
BseLI CCNNNNNNNGG 4 cut(s) 63, 375, 477, 673
BseMII CTCAG 2 cut(s) 18, 833
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 630
BseX3I CGGCCG 1 cut(s) 980
BseXI GCAGC 3 cut(s) 198, 226, 337
Bsh1285I CGRYCG 1 cut(s) 983
BshFI GGCC 8 cut(s) 25, 173, 179, 481, 914, 956, 982, 1041
BsiEI CGRYCG 1 cut(s) 983
BsiHKAI GWGCWC 2 cut(s) 87, 368
BsiHKCI CYCGRG 2 cut(s) 223, 361
BslFI GGGAC 3 cut(s) 34, 765, 782
BslI CCNNNNNNNGG 4 cut(s) 63, 375, 477, 673
BsmAI GTCTC 4 cut(s) 177, 197, 226, 296
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 3 cut(s) 34, 765, 782
BsnI GGCC 8 cut(s) 25, 173, 179, 481, 914, 956, 982, 1041
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 2 cut(s) 223, 361
Bsp1286I GDGCHC 2 cut(s) 87, 368
Bsp13I TCCGGA 1 cut(s) 454
Bsp143I GATC 2 cut(s) 121, 826
BspACI CCGC 6 cut(s) 63, 292, 310, 329, 749, 1018
BspANI GGCC 8 cut(s) 25, 173, 179, 481, 914, 956, 982, 1041
BspCNI CTCAG 2 cut(s) 19, 834
BspEI TCCGGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 44, 708
BspMAI CTGCAG 2 cut(s) 171, 216
BspMI ACCTGC 1 cut(s) 174
BspTI CTTAAG 1 cut(s) 640
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 4 cut(s) 387, 952, 978, 982
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 4 cut(s) 387, 952, 978, 982
BssECI CCNNGG 7 cut(s) 174, 265, 577, 685, 709, 957, 1035
BssMI GATC 2 cut(s) 121, 826
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 3 cut(s) 577, 957, 1035
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 2 cut(s) 176, 254
Bst4CI ACNGT 3 cut(s) 145, 269, 787
Bst6I CTCTTC 1 cut(s) 615
BstAFI CTTAAG 1 cut(s) 640
BstC8I GCNNGC 8 cut(s) 23, 171, 197, 294, 389, 483, 637, 984
BstDEI CTNAG 2 cut(s) 27, 842
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 3 cut(s) 150, 723, 748
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 2 cut(s) 124, 829
BstMAI GTCTC 4 cut(s) 177, 197, 226, 296
BstMBI GATC 2 cut(s) 121, 826
BstMCI CGRYCG 1 cut(s) 983
BstMWI GCNNNNNNNGC 3 cut(s) 22, 289, 1047
BstNI CCWGG 2 cut(s) 176, 254
BstNSI RCATGY 2 cut(s) 451, 639
BstSCI CCNGG 6 cut(s) 78, 153, 174, 252, 709, 993
BstSFI CTRYAG 3 cut(s) 167, 212, 232
BstV1I GCAGC 3 cut(s) 198, 226, 337
BstV2I GAAGAC 2 cut(s) 556, 597
BstZI CGGCCG 1 cut(s) 980
BsuRI GGCC 8 cut(s) 25, 173, 179, 481, 914, 956, 982, 1041
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 3 cut(s) 150, 723, 748
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 8 cut(s) 23, 171, 197, 294, 389, 483, 637, 984
CaiI CAGNNNCTG 3 cut(s) 175, 196, 331
CfoI GCGC 1 cut(s) 230
Cfr10I RCCGGY 4 cut(s) 387, 952, 978, 982
Cfr13I GGNCC 6 cut(s) 43, 172, 676, 706, 1032, 1039
Csp6I GTAC 3 cut(s) 349, 379, 1015
CviAII CATG 7 cut(s) 306, 448, 498, 636, 820, 916, 1079
CviQI GTAC 3 cut(s) 349, 379, 1015
DdeI CTNAG 2 cut(s) 27, 842
DpnI GATC 2 cut(s) 123, 828
DpnII GATC 2 cut(s) 121, 826
DraIII CACNNNGTG 1 cut(s) 477
EaeI YGGCCR 4 cut(s) 177, 912, 954, 980
EagI CGGCCG 1 cut(s) 980
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 980
Eco130I CCWWGG 3 cut(s) 577, 957, 1035
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 4 cut(s) 43, 676, 706, 1032
Eco52I CGGCCG 1 cut(s) 980
Eco53kI GAGCTC 1 cut(s) 85
Eco88I CYCGRG 2 cut(s) 223, 361
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 2 cut(s) 172, 1039
EcoRI GAATTC 1 cut(s) 886
EcoRII CCWGG 2 cut(s) 174, 252
EcoT14I CCWWGG 3 cut(s) 577, 957, 1035
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 577, 957, 1035
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 7 cut(s) 309, 451, 501, 639, 823, 919, 1082
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 3 cut(s) 34, 765, 782
FatI CATG 7 cut(s) 305, 447, 497, 635, 819, 915, 1078
FauI CCCGC 4 cut(s) 56, 285, 303, 742
Fnu4HI GCNGC 4 cut(s) 212, 215, 326, 329
FokI GGATG 3 cut(s) 137, 730, 755
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 212, 215, 326, 329
FspBI CTAG 3 cut(s) 218, 537, 584
GlaI GCGC 1 cut(s) 229
GluI GCNGC 4 cut(s) 212, 215, 326, 329
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 8 cut(s) 25, 173, 179, 481, 914, 956, 982, 1041
HhaI GCGC 1 cut(s) 230
Hin1II CATG 7 cut(s) 309, 451, 501, 639, 823, 919, 1082
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HincII GTYRAC 2 cut(s) 148, 817
HindII GTYRAC 2 cut(s) 148, 817
HinfI GANTC 2 cut(s) 690, 1064
HphI GGTGA 5 cut(s) 271, 349, 536, 782, 793
Hpy166II GTNNAC 3 cut(s) 148, 262, 817
Hpy188I TCNGA 4 cut(s) 395, 689, 706, 843
Hpy188III TCNNGA 5 cut(s) 223, 416, 455, 799, 970
Hpy8I GTNNAC 3 cut(s) 148, 262, 817
Hpy99I CGWCG 2 cut(s) 137, 740
HpyAV CCTTC 5 cut(s) 368, 397, 608, 734, 817
HpyCH4III ACNGT 3 cut(s) 145, 269, 787
HpyCH4IV ACGT 2 cut(s) 627, 1004
HpyCH4V TGCA 6 cut(s) 16, 105, 169, 214, 501, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 289, 1047
HpyF3I CTNAG 2 cut(s) 27, 842
HpySE526I ACGT 2 cut(s) 627, 1004
Hsp92II CATG 7 cut(s) 309, 451, 501, 639, 823, 919, 1082
HspAI GCGC 1 cut(s) 228
Kpn2I TCCGGA 1 cut(s) 454
KroI GCCGGC 2 cut(s) 387, 982
KroNI GCCGGC 2 cut(s) 389, 984
Kzo9I GATC 2 cut(s) 121, 826
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 3 cut(s) 198, 226, 337
LweI GCATC 2 cut(s) 127, 552
MaeI CTAG 3 cut(s) 218, 537, 584
MaeII ACGT 2 cut(s) 627, 1004
MaeIII GTNAC 3 cut(s) 425, 781, 967
MalI GATC 2 cut(s) 123, 828
MboI GATC 2 cut(s) 121, 826
MboII GAAGA 9 cut(s) 241, 310, 431, 486, 527, 561, 571, 602, 632
MhlI GDGCHC 2 cut(s) 87, 368
MlsI TGGCCA 1 cut(s) 914
MluCI AATT 3 cut(s) 505, 649, 886
MluNI TGGCCA 1 cut(s) 914
Mox20I TGGCCA 1 cut(s) 914
MroI TCCGGA 1 cut(s) 454
MroNI GCCGGC 2 cut(s) 387, 982
MroXI GAANNNNTTC 1 cut(s) 806
MscI TGGCCA 1 cut(s) 914
MseI TTAA 1 cut(s) 641
MslI CAYNNNNRTG 1 cut(s) 496
Msp20I TGGCCA 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 331
MspCI CTTAAG 1 cut(s) 640
MspR9I CCNGG 6 cut(s) 80, 155, 176, 254, 711, 995
MvaI CCWGG 2 cut(s) 176, 254
MwoI GCNNNNNNNGC 3 cut(s) 22, 289, 1047
NaeI GCCGGC 2 cut(s) 389, 984
NciI CCSGG 4 cut(s) 80, 155, 711, 995
NdeII GATC 2 cut(s) 121, 826
NgoMIV GCCGGC 2 cut(s) 387, 982
NlaIII CATG 7 cut(s) 309, 451, 501, 639, 823, 919, 1082
NlaIV GGNNCC 2 cut(s) 44, 708
NmuCI GTSAC 3 cut(s) 425, 781, 967
NspI RCATGY 2 cut(s) 451, 639
PaeI GCATGC 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 223
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 141, 359
PdiI GCCGGC 2 cut(s) 389, 984
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 2 cut(s) 690, 1064
PflMI CCANNNNNTGG 1 cut(s) 477
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 4 cut(s) 213, 216, 327, 330
PsiI TTATAA 1 cut(s) 924
Psp124BI GAGCTC 1 cut(s) 87
Psp1406I AACGTT 1 cut(s) 627
Psp6I CCWGG 2 cut(s) 174, 252
PspGI CCWGG 2 cut(s) 174, 252
PspN4I GGNNCC 2 cut(s) 44, 708
PspPI GGNCC 6 cut(s) 43, 172, 676, 706, 1032, 1039
PstI CTGCAG 2 cut(s) 171, 216
PstNI CAGNNNCTG 3 cut(s) 175, 196, 331
RsaI GTAC 3 cut(s) 350, 380, 1016
RsaNI GTAC 3 cut(s) 349, 379, 1015
RseI CAYNNNNRTG 1 cut(s) 496
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 641
SatI GCNGC 4 cut(s) 212, 215, 326, 329
Sau3AI GATC 2 cut(s) 121, 826
Sau96I GGNCC 6 cut(s) 43, 172, 676, 706, 1032, 1039
SbfI CCTGCAGG 1 cut(s) 171
ScaI AGTACT 1 cut(s) 350
ScrFI CCNGG 6 cut(s) 80, 155, 176, 254, 711, 995
SdaI CCTGCAGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 87, 368
SfaNI GCATC 2 cut(s) 127, 552
SfcI CTRYAG 3 cut(s) 167, 212, 232
Sfr274I CTCGAG 1 cut(s) 223
SinI GGWCC 4 cut(s) 43, 676, 706, 1032
SlaI CTCGAG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 496
SmlI CTYRAG 2 cut(s) 223, 640
SmoI CTYRAG 2 cut(s) 223, 640
SphI GCATGC 1 cut(s) 639
Sse8387I CCTGCAGG 1 cut(s) 171
Sse9I AATT 3 cut(s) 505, 649, 886
SsiI CCGC 6 cut(s) 63, 292, 310, 329, 749, 1018
SspMI CTAG 3 cut(s) 218, 537, 584
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 6 cut(s) 78, 153, 174, 252, 709, 993
StyI CCWWGG 3 cut(s) 577, 957, 1035
TaaI ACNGT 3 cut(s) 145, 269, 787
TaiI ACGT 2 cut(s) 630, 1007
TaqI TCGA 7 cut(s) 116, 132, 162, 224, 321, 353, 1008
TaqII GACCGA 1 cut(s) 915
TasI AATT 3 cut(s) 505, 649, 886
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 2 cut(s) 690, 1064
Tru1I TTAA 1 cut(s) 641
Tru9I TTAA 1 cut(s) 641
TseFI GTSAC 3 cut(s) 425, 781, 967
TseI GCWGC 3 cut(s) 211, 214, 325
Tsp45I GTSAC 3 cut(s) 425, 781, 967
TspDTI ATGAA 7 cut(s) 20, 302, 387, 431, 486, 572, 799
TspGWI ACGGA 1 cut(s) 396
Van91I CCANNNNNTGG 1 cut(s) 477
Vha464I CTTAAG 1 cut(s) 640
VpaK11BI GGWCC 4 cut(s) 43, 676, 706, 1032
XapI RAATTY 2 cut(s) 505, 886
XceI RCATGY 2 cut(s) 451, 639
XhoI CTCGAG 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 3 cut(s) 218, 537, 584
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.