Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003756

Physical Location & Seq

Genomic Coordinates Forward (+)

12807044 .. 12807897

Gene Structure 854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCGATCCGGAACATCGCCGTTGGCCGACCTGAGGAAACGTACCACCCGGACGCGTTGAGGGCTGCGTTAGCCGAGTTCATCTCGACGCTCATCTTCGTTTTCGCCGGCGAGGGCTCCGGAATGGCATTCGCCAAGCTAACCGATGACGCCGCAAATACTCCCGCAGGCCTCGTCGCCGCCGCGCTCGCCCACGCCTTCGGCCTCTTCGTCGCCGTCTCCATCAGCGCCAACATCTCCGGCGGACACGTCAACCCGGCCGTCACCTTTGGCGCCTTCATCGGCGGCAATATCTCTCTCCTCCGCGGCATCCTCTACTGGATCGCCCAGCTCCTCGGGGCCACCGTCGCCTGCGGCCTCCTCAAGTTCGTCACCAACGGCCAGACTACCGCTGCTTTCTCCCTGTCCTCGGGAGTGGGAGTGTGGAACGCGTTCGTTTTCGAGATCGTGATGACGTTCGGACTGGTCTACACGGTCTACGCGACTGCCATTGACCCGAAGAATGGGAGCGTGGGGACAATCGCGCCCATCGCGATTGGTTTCATCGTTGGCGCCAACATTTTGGCGGGTGGGGCTTTTGACGGAGCGTCCATGAACCCGGCCGTTTCTTTCGGGCCGGCGTTGGTGAGCTGGAGCTGGGAGAACCACTGGGTCTACTGGGCCGGGCCTTTGATCGGCGCCGGGCTCGCCGGGCTCATCTACGAGTTCGTGTTCATCGGCAACAGCGGCCACGAGCAACTGCCCTCCACTGACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042807 GO:0042886 GO:0042887 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080170 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

26.04

Weight (kDa)

4.98

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	16 - 234	8.7e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36830 AT3G26520
fragaria_vesca	FvH4_3g34940 FvH4_3g34940 FvH4_6g16770 FvH4_7g03120
malus_domestica	MD03G1100200.v1.1
prunus_persica	Prupe.6G085200_v2.0.a1 Prupe.7G125900_v2.0.a1
pyrus_communis	pycom03g08240 pycom11g09610 pycom12g10750
rosa_chinensis	RchiOBHm_Chr3g0470701 RchiOBHm_Chr5g0062791
rosa_laevigata	RLG00000024246 RLG00000035580
rosa_multiflora	Rmu_co8269841.1_g000001 Rmu_sc0002790.1_g000002 Rmu_sc0006168.1_g000020 Rmu_ssc0000472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017830 Rroxscaffold_6G00410570
rosa_rugosa	Rorug03G0112300 Rorug05G0351600
rosa_samantha	Rh3AG161800 Rh3BG186400 Rh3CG176700 Rh3DG188800 Rh5AG412900 Rh5BG426800 Rh5CG450700 Rh5DG440700
rosa_wichuraiana	Rw0G004640 Rw5G038800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	272, 551, 677
AccI	GTMKAC	3 cut(s)	468, 477, 654
AccII	CGCG	7 cut(s)	56, 185, 306, 431, 482, 524, 533
AccIII	TCCGGA	2 cut(s)	9, 119
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	5 cut(s)	25, 258, 379, 600, 727
AcyI	GRCGYC	4 cut(s)	150, 273, 552, 678
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	4 cut(s)	34, 409, 503, 674
AflIII	ACRYGT	3 cut(s)	54, 247, 429
AhdI	GACNNNNNGTC	1 cut(s)	586
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	4 cut(s)	139, 331, 630, 636
AluI	AGCT	4 cut(s)	139, 331, 630, 636
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	2 cut(s)	335, 409
Aor13HI	TCCGGA	2 cut(s)	9, 119
ApeKI	GCWGC	2 cut(s)	65, 392
Asp700I	GAANNNNTTC	1 cut(s)	431
AspLEI	GCGC	6 cut(s)	187, 230, 275, 526, 554, 680
AspS9I	GGNCC	4 cut(s)	339, 614, 660, 665
AsuC2I	CCSGG	6 cut(s)	50, 257, 599, 664, 682, 691
AsuHPI	GGTGA	3 cut(s)	256, 364, 637
AvaI	CYCGRG	2 cut(s)	335, 409
AxyI	CCTNAGG	1 cut(s)	33
BanI	GGYRCC	3 cut(s)	272, 551, 677
BanII	GRGCYC	3 cut(s)	119, 687, 696
BauI	CACGAG	1 cut(s)	731
BbvI	GCAGC	2 cut(s)	52, 379
BccI	CCATC	2 cut(s)	230, 536
BceAI	ACGGC	5 cut(s)	5, 200, 245, 394, 587
BcnI	CCSGG	6 cut(s)	50, 257, 599, 664, 682, 691
BcoDI	GTCTC	1 cut(s)	223
BfoI	RGCGCY	4 cut(s)	231, 276, 555, 681
BisI	GCNGC	9 cut(s)	66, 153, 180, 183, 286, 307, 355, 393, 727
BlsI	GCNGC	9 cut(s)	67, 154, 181, 184, 287, 308, 356, 394, 728
Bme1390I	CCNGG	6 cut(s)	50, 257, 599, 664, 682, 691
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmeT110I	CYCGRG	2 cut(s)	335, 409
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	339, 614, 660, 665
BmiI	GGNNCC	5 cut(s)	118, 274, 340, 553, 679
BmrFI	CCNGG	6 cut(s)	50, 257, 599, 664, 682, 691
BmrI	ACTGGG	2 cut(s)	658, 667
BmsI	GCATC	1 cut(s)	318
BmuI	ACTGGG	2 cut(s)	658, 667
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	6 cut(s)	50, 257, 599, 664, 682, 691
BsaHI	GRCGYC	4 cut(s)	150, 273, 552, 678
BsaJI	CCNNGG	3 cut(s)	304, 334, 408
BsaWI	WCCGGW	2 cut(s)	9, 119
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 409, 503, 674
Bse118I	RCCGGY	2 cut(s)	107, 616
Bse1I	ACTGG	4 cut(s)	323, 468, 653, 662
Bse21I	CCTNAGG	1 cut(s)	33
BseAI	TCCGGA	2 cut(s)	9, 119
BseDI	CCNNGG	3 cut(s)	304, 334, 408
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	4 cut(s)	34, 409, 503, 674
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	4 cut(s)	323, 468, 653, 662
BseRI	GAGGAG	3 cut(s)	290, 323, 350
BseX3I	CGGCCG	2 cut(s)	258, 600
BseXI	GCAGC	2 cut(s)	52, 379
BseYI	CCCAGC	2 cut(s)	327, 636
Bsh1236I	CGCG	7 cut(s)	56, 185, 306, 431, 482, 524, 533
Bsh1285I	CGRYCG	2 cut(s)	261, 603
BshNI	GGYRCC	3 cut(s)	272, 551, 677
BsiEI	CGRYCG	2 cut(s)	261, 603
BsiHKCI	CYCGRG	2 cut(s)	335, 409
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	4 cut(s)	34, 409, 503, 674
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	128
BsoBI	CYCGRG	2 cut(s)	335, 409
Bsp1286I	GDGCHC	3 cut(s)	119, 687, 696
Bsp13I	TCCGGA	2 cut(s)	9, 119
Bsp143I	GATC	4 cut(s)	6, 321, 444, 672
Bsp68I	TCGCGA	1 cut(s)	533
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	2 cut(s)	9, 119
BspFNI	CGCG	7 cut(s)	56, 185, 306, 431, 482, 524, 533
BspLI	GGNNCC	5 cut(s)	118, 274, 340, 553, 679
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	3 cut(s)	272, 551, 677
BsrFI	RCCGGY	2 cut(s)	107, 616
BsrI	ACTGG	4 cut(s)	323, 468, 653, 662
BssAI	RCCGGY	2 cut(s)	107, 616
BssECI	CCNNGG	3 cut(s)	304, 334, 408
BssMI	GATC	4 cut(s)	6, 321, 444, 672
BssNI	GRCGYC	4 cut(s)	150, 273, 552, 678
BssSI	CACGAG	1 cut(s)	731
Bst2BI	CACGAG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	346, 475
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	4 cut(s)	150, 273, 552, 678
BstC8I	GCNNGC	6 cut(s)	109, 169, 189, 352, 618, 687
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	7 cut(s)	56, 185, 306, 431, 482, 524, 533
BstH2I	RGCGCY	4 cut(s)	231, 276, 555, 681
BstHHI	GCGC	6 cut(s)	187, 230, 275, 526, 554, 680
BstKTI	GATC	4 cut(s)	9, 324, 447, 675
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	4 cut(s)	6, 321, 444, 672
BstMCI	CGRYCG	2 cut(s)	261, 603
BstMWI	GCNNNNNNNGC	9 cut(s)	62, 71, 188, 347, 530, 572, 686, 691, 726
BstSCI	CCNGG	6 cut(s)	48, 255, 597, 662, 680, 689
BstUI	CGCG	7 cut(s)	56, 185, 306, 431, 482, 524, 533
BstV1I	GCAGC	2 cut(s)	52, 379
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstZI	CGGCCG	2 cut(s)	258, 600
Bsu36I	CCTNAGG	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	646, 747
BtuMI	TCGCGA	1 cut(s)	533
Cac8I	GCNNGC	6 cut(s)	109, 169, 189, 352, 618, 687
CfoI	GCGC	6 cut(s)	187, 230, 275, 526, 554, 680
Cfr10I	RCCGGY	2 cut(s)	107, 616
Cfr13I	GGNCC	4 cut(s)	339, 614, 660, 665
Cfr42I	CCGCGG	1 cut(s)	307
CseI	GACGC	4 cut(s)	62, 97, 158, 576
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	1 cut(s)	592
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	33
DinI	GGCGCC	3 cut(s)	274, 553, 679
DpnI	GATC	4 cut(s)	8, 323, 446, 674
DpnII	GATC	4 cut(s)	6, 321, 444, 672
DriI	GACNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	5 cut(s)	25, 258, 379, 600, 727
EagI	CGGCCG	2 cut(s)	258, 600
Eam1104I	CTCTTC	1 cut(s)	212
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	258
EclXI	CGGCCG	2 cut(s)	258, 600
Eco147I	AGGCCT	1 cut(s)	171
Eco24I	GRGCYC	3 cut(s)	119, 687, 696
Eco52I	CGGCCG	2 cut(s)	258, 600
Eco81I	CCTNAGG	1 cut(s)	33
Eco88I	CYCGRG	2 cut(s)	335, 409
EcoT38I	GRGCYC	3 cut(s)	119, 687, 696
EgeI	GGCGCC	3 cut(s)	274, 553, 679
EheI	GGCGCC	3 cut(s)	274, 553, 679
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	1 cut(s)	595
FaiI	YATR	1 cut(s)	593
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	1 cut(s)	591
FauI	CCCGC	2 cut(s)	172, 559
FblI	GTMKAC	3 cut(s)	468, 477, 654
Fnu4HI	GCNGC	9 cut(s)	66, 153, 180, 183, 286, 307, 355, 393, 727
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	3 cut(s)	119, 687, 696
Fsp4HI	GCNGC	9 cut(s)	66, 153, 180, 183, 286, 307, 355, 393, 727
GlaI	GCGC	6 cut(s)	186, 229, 274, 525, 553, 679
GluI	GCNGC	9 cut(s)	66, 153, 180, 183, 286, 307, 355, 393, 727
GsaI	CCCAGC	2 cut(s)	331, 640
GsuI	CTGGAG	1 cut(s)	652
HaeII	RGCGCY	4 cut(s)	231, 276, 555, 681
HgaI	GACGC	4 cut(s)	62, 97, 158, 576
HhaI	GCGC	6 cut(s)	187, 230, 275, 526, 554, 680
Hin1I	GRCGYC	4 cut(s)	150, 273, 552, 678
Hin1II	CATG	1 cut(s)	595
Hin6I	GCGC	6 cut(s)	185, 228, 273, 524, 552, 678
HinP1I	GCGC	6 cut(s)	185, 228, 273, 524, 552, 678
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HphI	GGTGA	3 cut(s)	256, 364, 637
Hpy166II	GTNNAC	4 cut(s)	253, 469, 478, 655
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	7 cut(s)	10, 85, 120, 411, 442, 448, 532
Hpy8I	GTNNAC	4 cut(s)	253, 469, 478, 655
Hpy99I	CGWCG	4 cut(s)	91, 179, 215, 350
HpyAV	CCTTC	2 cut(s)	208, 286
HpyCH4III	ACNGT	2 cut(s)	346, 475
HpyCH4IV	ACGT	3 cut(s)	41, 249, 455
HpyF10VI	GCNNNNNNNGC	9 cut(s)	62, 71, 188, 347, 530, 572, 686, 691, 726
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	3 cut(s)	41, 249, 455
Hsp92I	GRCGYC	4 cut(s)	150, 273, 552, 678
Hsp92II	CATG	1 cut(s)	595
HspAI	GCGC	6 cut(s)	185, 228, 273, 524, 552, 678
KasI	GGCGCC	3 cut(s)	272, 551, 677
Kpn2I	TCCGGA	2 cut(s)	9, 119
KroI	GCCGGC	2 cut(s)	107, 616
KroNI	GCCGGC	2 cut(s)	109, 618
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	6, 321, 444, 672
LmnI	GCTCC	5 cut(s)	122, 336, 507, 584, 633
Lsp1109I	GCAGC	2 cut(s)	52, 379
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	3 cut(s)	41, 249, 455
MaeIII	GTNAC	2 cut(s)	262, 370
MalI	GATC	4 cut(s)	8, 323, 446, 674
MboI	GATC	4 cut(s)	6, 321, 444, 672
MboII	GAAGA	3 cut(s)	88, 199, 511
MhlI	GDGCHC	3 cut(s)	119, 687, 696
MluI	ACGCGT	2 cut(s)	54, 429
Mly113I	GGCGCC	3 cut(s)	273, 552, 678
MreI	CGCCGGCG	1 cut(s)	107
MroI	TCCGGA	2 cut(s)	9, 119
MroNI	GCCGGC	2 cut(s)	107, 616
MroXI	GAANNNNTTC	1 cut(s)	431
MspA1I	CMGCKG	3 cut(s)	306, 392, 726
MspR9I	CCNGG	6 cut(s)	50, 257, 599, 664, 682, 691
Mva1269I	GAATGC	1 cut(s)	128
MvnI	CGCG	7 cut(s)	56, 185, 306, 431, 482, 524, 533
MwoI	GCNNNNNNNGC	9 cut(s)	62, 71, 188, 347, 530, 572, 686, 691, 726
NaeI	GCCGGC	2 cut(s)	109, 618
NarI	GGCGCC	3 cut(s)	273, 552, 678
NciI	CCSGG	6 cut(s)	50, 257, 599, 664, 682, 691
NdeII	GATC	4 cut(s)	6, 321, 444, 672
NgoMIV	GCCGGC	2 cut(s)	107, 616
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	5 cut(s)	118, 274, 340, 553, 679
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	262, 370
NruI	TCGCGA	1 cut(s)	533
PceI	AGGCCT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 342, 479
PctI	GAATGC	1 cut(s)	128
PdiI	GCCGGC	2 cut(s)	109, 618
PdmI	GAANNNNTTC	1 cut(s)	431
PkrI	GCNGC	9 cut(s)	67, 154, 181, 184, 287, 308, 356, 394, 728
PluTI	GGCGCC	3 cut(s)	276, 555, 681
PspFI	CCCAGC	2 cut(s)	327, 636
PspN4I	GGNNCC	5 cut(s)	118, 274, 340, 553, 679
PspPI	GGNCC	4 cut(s)	339, 614, 660, 665
RruI	TCGCGA	1 cut(s)	533
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacII	CCGCGG	1 cut(s)	307
SatI	GCNGC	9 cut(s)	66, 153, 180, 183, 286, 307, 355, 393, 727
Sau3AI	GATC	4 cut(s)	6, 321, 444, 672
Sau96I	GGNCC	4 cut(s)	339, 614, 660, 665
ScrFI	CCNGG	6 cut(s)	50, 257, 599, 664, 682, 691
SduI	GDGCHC	3 cut(s)	119, 687, 696
SetI	ASST	9 cut(s)	34, 44, 141, 252, 269, 333, 458, 632, 638
SfaNI	GCATC	1 cut(s)	318
SfoI	GGCGCC	3 cut(s)	274, 553, 679
Sfr303I	CCGCGG	1 cut(s)	307
SgrAI	CRCCGGYG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	171
SspDI	GGCGCC	3 cut(s)	272, 551, 677
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	6 cut(s)	48, 255, 597, 662, 680, 689
TaaI	ACNGT	2 cut(s)	346, 475
TaiI	ACGT	3 cut(s)	44, 252, 458
TaqI	TCGA	2 cut(s)	86, 441
TauI	GCSGC	7 cut(s)	155, 182, 185, 288, 309, 357, 729
TscAI	CASTG	2 cut(s)	653, 754
TseFI	GTSAC	2 cut(s)	262, 370
TseI	GCWGC	2 cut(s)	65, 392
Tsp45I	GTSAC	2 cut(s)	262, 370
TspDTI	ATGAA	5 cut(s)	70, 268, 532, 608, 703
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	653, 754
XmiI	GTMKAC	3 cut(s)	468, 477, 654
XmnI	GAANNNNTTC	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.