Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005488

Physical Location & Seq

Genomic Coordinates Forward (+)

19945490 .. 19946093

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTAGCTCCGGACAGCTCCTTAAGCTTGCATGTTTGGTGGTGGTGATGTTCTGCATGGTGGCTTGTGTCCCCAAGGCCGATGCAGCTATGACATGCGGTCAGGTGGTGAGTGACCTGACTCCATGCATTTCCTACGTGAGGGCCGGCGGGGCATTGGCCCCCGCTTGTTGCAACGGGGTCAGGACCCTCTTCACCCTGGCTCAAACCACCCCTGACCGCCAAAGTGTCTGCAACTGCTTGAAGCAAGCAATCAATGGCATCCCTTACACCAATACCAACGCTGGCCTTGCTGCTGGCCTTCCTGCCAAGTGTGGTGTCAACATTCCGTACAAGATCAGCCCCTCTACTGACTGCAAAAGTGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

124

Amino Acids

12.65

Weight (kDa)

8.82

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 111	1e-05	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 119	1.2e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01870
fragaria_vesca	FvH4_6g09960 FvH4_7g28420
malus_domestica	MD04G1174000.v1.1 MD12G1187600.v1.1
prunus_persica	Prupe.6G293000_v2.0.a1
pyrus_communis	pycom04g15360 pycom12g17560
rosa_chinensis	RchiOBHm_Chr3g0460541 RchiOBHm_Chr3g0460571
rosa_laevigata	RLG00000024995 RLG00000031904
rosa_multiflora	Rmu_co8040472.1_g000001 Rmu_sc0001256.1_g000003 Rmu_sc0003701.1_g000004 Rmu_sc0006046.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419360 Rroxscaffold_6G00419390
rosa_rugosa	Rorug03G0043600 Rorug03G0043900
rosa_samantha	Rh3AG101600 Rh3AG102100 Rh3BG105600 Rh3BG105800 Rh3CG107400 Rh3DG107000 Rh3DG107200
rosa_wichuraiana	Rw3G008650 Rw3G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	4 cut(s)	99, 150, 165, 220
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	141
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	244
AhdI	GACNNNNNGTC	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	9, 19, 28, 89
AluI	AGCT	4 cut(s)	9, 19, 28, 89
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	5 cut(s)	78, 144, 159, 286, 298
ApeKI	GCWGC	2 cut(s)	86, 293
AspS9I	GGNCC	3 cut(s)	144, 160, 186
AsuHPI	GGTGA	3 cut(s)	58, 121, 187
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	98, 280
BciT130I	CCWGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	87, 294
BlsI	GCNGC	2 cut(s)	88, 295
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	186
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmgT120I	GGNCC	3 cut(s)	144, 160, 186
BmiI	GGNNCC	2 cut(s)	162, 188
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	73, 270
BmtI	GCTAGC	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	75, 198
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	75, 198
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	98, 280
BshFI	GGCC	5 cut(s)	80, 146, 161, 288, 300
BsiSI	CCGG	2 cut(s)	12, 147
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	5 cut(s)	80, 146, 161, 288, 300
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	4 cut(s)	99, 150, 165, 220
BspANI	GGCC	5 cut(s)	80, 146, 161, 288, 300
BspEI	TCCGGA	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	162, 188
BspOI	GCTAGC	1 cut(s)	9
BspTI	CTTAAG	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	75, 198
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	6 cut(s)	7, 30, 148, 249, 286, 298
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 86, 152, 290
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	2 cut(s)	36, 99
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	98, 280
BsuRI	GGCC	5 cut(s)	80, 146, 161, 288, 300
BtsCI	GGATG	1 cut(s)	261
Cac8I	GCNNGC	6 cut(s)	7, 30, 148, 249, 286, 298
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	144, 160, 186
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	4 cut(s)	33, 58, 96, 126
CviQI	GTAC	1 cut(s)	331
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DriI	GACNNNNNGTC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	197
Eam1105I	GACNNNNNGTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	36, 61, 99, 129
FaiI	YATR	5 cut(s)	34, 59, 92, 97, 127
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	32, 57, 95, 125
FauI	CCCGC	2 cut(s)	143, 172
Fnu4HI	GCNGC	2 cut(s)	87, 294
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	87, 294
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	87, 294
HaeIII	GGCC	5 cut(s)	80, 146, 161, 288, 300
HapII	CCGG	2 cut(s)	12, 147
Hin1II	CATG	4 cut(s)	36, 61, 99, 129
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	12, 147
HphI	GGTGA	3 cut(s)	58, 121, 187
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	12, 184
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	7 cut(s)	32, 57, 86, 129, 174, 234, 357
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 86, 152, 290
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	36, 61, 99, 129
Kpn2I	TCCGGA	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	14, 24
Lsp1109I	GCAGC	2 cut(s)	98, 280
LweI	GCATC	2 cut(s)	73, 270
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	3 cut(s)	135, 200, 355
Mph1103I	ATGCAT	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	146
MseI	TTAA	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	2 cut(s)	12, 147
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	25, 86, 152, 290
NaeI	GCCGGC	1 cut(s)	148
NdeII	GATC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	146
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	36, 61, 99, 129
NlaIV	GGNNCC	2 cut(s)	162, 188
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	2 cut(s)	36, 99
PdiI	GCCGGC	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	88, 295
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	162, 188
PspPI	GGNCC	3 cut(s)	144, 160, 186
PspPPI	RGGWCCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	87, 294
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	3 cut(s)	144, 160, 186
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	7 cut(s)	11, 21, 30, 91, 108, 120, 141
SfaNI	GCATC	2 cut(s)	73, 270
SinI	GGWCC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SsiI	CCGC	4 cut(s)	99, 150, 165, 220
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	86, 293
Tsp45I	GTSAC	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	318
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	139
XceI	RCATGY	2 cut(s)	36, 99
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.