Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Forward (+)

20914255 .. 20916888

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGTATTGGTATTATGGTCTAGTTGTTATAGCGAAGAAATCCATATCAGATTTCTTTGCTTATGGAGAGCCCGTTCAAATGCGTACATACAAGGTCAAGTTCTATTCCAATTACACTGTCATATTGACGTTATATACCAATAATACAAAAACATGTATTAGTTCATCTTTGTATATTTTTGAATTATTGACCCGAGATGTCAATGTGACCGTATATCCACGTCGTACAAATTGCTCTGGTCAAATAAACTGGACCATATTTGTCTCTGGATTTGACCCACAAATAAGTGCTCGGGTTGCCTCTTTGGATTTGACCCACAATATACTCGCGGACTTAACAGAATCAACCGATCAACCGAACAAGACAGAGTCGGTGTTAGAGAGCTACAAATTCCAAATTCCTAATTGCGATCGGAAAACCCCTTTTCTCAGCAAAAAGATGGAGAAGAGCCAACCGCCGCCGCAGCAGCAGCAGCCCATGTCAGTGAAAGAAACAGTGTACAAGCTCCAACTCGCTCTCCTCGACGGCGTCAAAACCCTTGACCAACTCTACTTGGCCGGCTCAATAATCTCCCGCTCCGATTACAGCGACGTCGTCACGGAGCGCACCATAGCCGACCACTGCGGCTACCCTCTATGCCCCCATGCCTTGCCTCCGGAATCCTCCCGCCCCCGCAAGGGCCACTATCGCATTTCACTCAAGGAGCACAAGGTCTACGACCTTCATGAGACCTACATGTACTGCTCCTCGAGCTGTCTTATCGAAAGCAAGGCTTTTGCTCAGAGTTTGAGCGAGGAGAGGTGCGATGTCTTGGATTATGGCAAGGTTGAGAAGGTCTTGAGGGCTTTTGGGGATGTGGGTTTGGACAAAGGGGAAGTGGGATTGGGGGAGACTGGGGATTTGGGAATTTCGAAGTTGAAGATCGAAGAAAAGAGCAAAGCGGAGATTGGGGATTTGGGGATTTCTAAGTTGAAGATTGAAGAAAAGAGTGAAGTGCAGTTAGGGGATGTGGGCGTGGATGGTCCCTCTAATGCTATTGAGGGCTATGTTCCACACAATCAGCGGATATCCAAGCCATTGGGTTCGAAAAAGAACAAAAAAGGGTCCAAGGGTAAAGAAGCGAAAACGAGTGGCGGGAAGGATATGATCTTTAATGAGATGGATTTCATGAGTTGTATAATCGCTAGTGATGAATACAGTGTGTCCAAAATTCCACCAAGTTCTGGGGAGAATGGTTGTGAAACTAAGTTTAAGGAATCAGAAGAAAAATTTGCTCATATTAAGAATGATTCTGAAAAGAAATCCAAACAATCAAGAGGGGGAAAAAGTAAGATTTCCAAGGAAGATGATGTTGGCATTCAAGAGGCGCCTTCAACTTCAGAGACTTCTCAAACTATTTTGATTAGAAGTACTAAAGAAGCAAGAGAGGAATTCCCTGGTGATAAGGAGAAATCAAATGTGCCAAAGCTAAGATCCTCTCTTAAACCTTCAGGGGCAAAAAAACTTAATCGCTCTGTTACTTGGGCTGACGAGAAGGTGGAACATAGAATGAATGGTTATGATACATTGGGCAGTATCCACAAACCTTTGCTTAAACCTTCAGTGGAAAATGAAGTCGGTTGCTCTGTTACCTGGTCTGATGAGAAGATTGATAGCACTAAGAGTAAAAATGTTTGCGAGGTTAAAGAAGTGCAAGGTGCAAAAGAGGGTTCTGGTGTATTAGGGAATTTGGAATTGCTAGATAATGAACGTTTGGAATCCGCAGAATTCTGTGCCATGGCATTGAGGCAGGTAGCAGAAGCTGTTGCATCTGGAGAATCTGATGTCAATGATGCTGTTTCGAGTGCTGGAATTATTTTATTGCCACGTCCAGATGGTGCGGATGAAGAAGAGCCTACTGAGGATGTTGACATGCTTGAACCAGAACAAGCTCCTCTGCAGCAAAGAAATCCTGGAAATCCAAATTTTGATTTGTTTGACTCTGAGGATACTTGGTTTGATCGATCCACCAGAGGGTTTCAACTTAACTTTATCACCTTTTTTAACAATGTGGAATTCACTCTTTACATGGATAACATCATCTACACTGGCATATATATATGGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

704

Amino Acids

78.46

Weight (kDa)

5.32

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP2_Rtr1	PF04181	189 - 264	9.3e-22	Rtr1/RPAP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	1780
AccB1I	GGYRCC	1 cut(s)	1366
AccB7I	CCANNNNNTGG	1 cut(s)	1223
AccBSI	CCGCTC	1 cut(s)	576
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	655
AclI	AACGTT	1 cut(s)	1750
AclWI	GGATC	2 cut(s)	1467, 1998
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	3 cut(s)	1362, 1473, 1584
AcyI	GRCGYC	3 cut(s)	528, 591, 1367
AfaI	GTAC	5 cut(s)	85, 226, 500, 740, 1411
AfiI	CCNNNNNNNGG	4 cut(s)	676, 677, 1223, 2013
AflIII	ACRYGT	2 cut(s)	152, 735
AgsI	TTSAA	9 cut(s)	77, 182, 919, 973, 980, 1361, 1374, 1919, 2021
AjiI	CACGTC	2 cut(s)	221, 1868
AjnI	CCWGG	3 cut(s)	1435, 1631, 1951
AjuI	GAANNNNNNNTTGG	2 cut(s)	1335, 1367
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	6 cut(s)	384, 505, 753, 1468, 1802, 1931
AluI	AGCT	6 cut(s)	384, 505, 753, 1468, 1802, 1931
Alw21I	GWGCWC	2 cut(s)	292, 708
Alw26I	GTCTC	4 cut(s)	268, 722, 884, 1376
AlwI	GGATC	2 cut(s)	1467, 1998
AlwNI	CAGNNNCTG	1 cut(s)	1802
Ama87I	CYCGRG	3 cut(s)	192, 291, 748
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	2 cut(s)	555, 679
ApeKI	GCWGC	5 cut(s)	463, 466, 469, 472, 1939
ArsI	GACNNNNNNTTYG	2 cut(s)	883, 915
AspLEI	GCGC	2 cut(s)	606, 1369
AspS9I	GGNCC	4 cut(s)	252, 679, 1022, 1104
AsuHPI	GGTGA	2 cut(s)	1451, 2026
AsuII	TTCGAA	2 cut(s)	911, 1085
AvaI	CYCGRG	3 cut(s)	192, 291, 748
AvaII	GGWCC	3 cut(s)	252, 1022, 1104
BanI	GGYRCC	1 cut(s)	1366
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	292, 708
BbvI	GCAGC	5 cut(s)	475, 478, 481, 484, 1951
BccI	CCATC	4 cut(s)	433, 1013, 1153, 1868
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	3 cut(s)	1437, 1633, 1953
BciVI	GTATCC	2 cut(s)	1586, 1981
BcoDI	GTCTC	4 cut(s)	268, 722, 884, 1376
BfaI	CTAG	3 cut(s)	20, 1185, 1739
BfmI	CTRYAG	1 cut(s)	1937
BfoI	RGCGCY	1 cut(s)	1370
BfuAI	ACCTGC	1 cut(s)	1780
BfuI	GTATCC	2 cut(s)	1586, 1981
BisI	GCNGC	8 cut(s)	458, 461, 464, 467, 470, 473, 625, 1940
BlsI	GCNGC	8 cut(s)	459, 462, 465, 468, 471, 474, 626, 1941
BmcAI	AGTACT	1 cut(s)	1411
Bme1390I	CCNGG	3 cut(s)	1437, 1633, 1953
Bme18I	GGWCC	3 cut(s)	252, 1022, 1104
BmeT110I	CYCGRG	3 cut(s)	192, 291, 748
BmgBI	CACGTC	2 cut(s)	221, 1868
BmgT120I	GGNCC	4 cut(s)	252, 679, 1022, 1104
BmiI	GGNNCC	3 cut(s)	1024, 1105, 1368
BmrFI	CCNGG	3 cut(s)	1437, 1633, 1953
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	2 cut(s)	1817, 1822
BmuI	ACTGGG	1 cut(s)	903
BpmI	CTGGAG	1 cut(s)	1833
Bpu14I	TTCGAA	2 cut(s)	911, 1085
BpuEI	CTTGAG	2 cut(s)	683, 859
Bsa29I	ATCGAT	1 cut(s)	2002
BsaHI	GRCGYC	3 cut(s)	528, 591, 1367
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	4 cut(s)	1107, 1338, 1435, 1776
BsaWI	WCCGGW	1 cut(s)	655
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 501, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	676, 677, 1223, 2013
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	3 cut(s)	254, 898, 2092
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	3 cut(s)	1437, 1633, 1953
BseCI	ATCGAT	1 cut(s)	2002
BseDI	CCNNGG	4 cut(s)	1107, 1338, 1435, 1776
BseGI	GGATG	5 cut(s)	859, 1012, 1024, 1888, 1909
BseLI	CCNNNNNNNGG	4 cut(s)	676, 677, 1223, 2013
BseMII	CTCAG	4 cut(s)	442, 794, 1890, 1974
BseNI	ACTGG	3 cut(s)	254, 898, 2092
BseRI	GAGGAG	4 cut(s)	509, 736, 809, 1923
BseXI	GCAGC	5 cut(s)	475, 478, 481, 484, 1951
BsgI	GTGCAG	1 cut(s)	1016
Bsh1236I	CGCG	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	2 cut(s)	557, 681
BshNI	GGYRCC	1 cut(s)	1366
BshVI	ATCGAT	1 cut(s)	2002
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	292, 708
BsiHKCI	CYCGRG	3 cut(s)	192, 291, 748
BsiSI	CCGG	2 cut(s)	558, 656
BslFI	GGGAC	1 cut(s)	1008
BslI	CCNNNNNNNGG	4 cut(s)	676, 677, 1223, 2013
BsmAI	GTCTC	4 cut(s)	268, 722, 884, 1376
BsmFI	GGGAC	1 cut(s)	1008
BsmI	GAATGC	1 cut(s)	1356
BsnI	GGCC	2 cut(s)	557, 681
Bso31I	GGTCTC	1 cut(s)	722
BsoBI	CYCGRG	3 cut(s)	192, 291, 748
Bsp119I	TTCGAA	2 cut(s)	911, 1085
Bsp1286I	GDGCHC	3 cut(s)	72, 292, 708
Bsp13I	TCCGGA	1 cut(s)	655
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
Bsp19I	CCATGG	1 cut(s)	1776
BspANI	GGCC	2 cut(s)	557, 681
BspCNI	CTCAG	4 cut(s)	441, 793, 1891, 1975
BspDI	ATCGAT	1 cut(s)	2002
BspEI	TCCGGA	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	2 cut(s)	724, 1167
BspLI	GGNNCC	3 cut(s)	1024, 1105, 1368
BspMAI	CTGCAG	1 cut(s)	1941
BspMI	ACCTGC	1 cut(s)	1780
BspPI	GGATC	2 cut(s)	1467, 1998
BspQI	GCTCTTC	2 cut(s)	440, 1884
BspT104I	TTCGAA	2 cut(s)	911, 1085
BspT107I	GGYRCC	1 cut(s)	1366
BspTNI	GGTCTC	1 cut(s)	722
BsrBI	CCGCTC	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	557
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	3 cut(s)	254, 898, 2092
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	4 cut(s)	1107, 1338, 1435, 1776
BssMI	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
BssNI	GRCGYC	3 cut(s)	528, 591, 1367
BssT1I	CCWWGG	3 cut(s)	1107, 1338, 1776
Bst2UI	CCWGG	3 cut(s)	1437, 1633, 1953
Bst4CI	ACNGT	4 cut(s)	118, 211, 496, 1199
Bst6I	CTCTTC	2 cut(s)	440, 1884
BstACI	GRCGYC	3 cut(s)	528, 591, 1367
BstAUI	TGTACA	1 cut(s)	498
BstBI	TTCGAA	2 cut(s)	911, 1085
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	8 cut(s)	428, 780, 966, 1245, 1469, 1659, 1899, 1983
BstDSI	CCRYGG	1 cut(s)	1776
BstF5I	GGATG	5 cut(s)	859, 1012, 1024, 1888, 1909
BstFNI	CGCG	1 cut(s)	329
BstH2I	RGCGCY	1 cut(s)	1370
BstHHI	GCGC	2 cut(s)	606, 1369
BstKTI	GATC	7 cut(s)	352, 412, 924, 1149, 1475, 2002, 2006
BstMAI	GTCTC	4 cut(s)	268, 722, 884, 1376
BstMBI	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	7 cut(s)	296, 463, 466, 469, 472, 687, 750
BstNI	CCWGG	3 cut(s)	1437, 1633, 1953
BstNSI	RCATGY	3 cut(s)	156, 739, 1915
BstSCI	CCNGG	3 cut(s)	1435, 1631, 1951
BstSFI	CTRYAG	1 cut(s)	1937
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	5 cut(s)	475, 478, 481, 484, 1951
BstX2I	RGATCY	1 cut(s)	1472
BstXI	CCANNNNNNTGG	1 cut(s)	1078
BstYI	RGATCY	1 cut(s)	1472
Bsu15I	ATCGAT	1 cut(s)	2002
BsuI	GTATCC	2 cut(s)	1586, 1981
BsuRI	GGCC	2 cut(s)	557, 681
BsuTUI	ATCGAT	1 cut(s)	2002
BtgI	CCRYGG	1 cut(s)	1776
BtgZI	GCGATG	1 cut(s)	819
BtrI	CACGTC	2 cut(s)	221, 1868
BtsCI	GGATG	5 cut(s)	859, 1012, 1024, 1888, 1909
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	7 cut(s)	114, 489, 501, 619, 1204, 1608, 2085
BveI	ACCTGC	1 cut(s)	1780
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	1802
CciI	TCATGA	2 cut(s)	724, 1167
CfoI	GCGC	2 cut(s)	606, 1369
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	4 cut(s)	252, 679, 1022, 1104
ClaI	ATCGAT	1 cut(s)	2002
CseI	GACGC	1 cut(s)	517
CsiI	ACCWGGT	1 cut(s)	1631
Csp6I	GTAC	5 cut(s)	84, 225, 499, 739, 1410
CviAII	CATG	9 cut(s)	153, 478, 644, 725, 736, 1168, 1777, 1912, 2068
CviQI	GTAC	5 cut(s)	84, 225, 499, 739, 1410
DdeI	CTNAG	8 cut(s)	428, 780, 966, 1245, 1469, 1659, 1899, 1983
DinI	GGCGCC	1 cut(s)	1368
DpnI	GATC	7 cut(s)	351, 411, 923, 1148, 1474, 2001, 2005
DpnII	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	2 cut(s)	440, 1884
EarI	CTCTTC	2 cut(s)	440, 1884
Eco130I	CCWWGG	3 cut(s)	1107, 1338, 1776
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	722
Eco32I	GATATC	1 cut(s)	1068
Eco47I	GGWCC	3 cut(s)	252, 1022, 1104
Eco57I	CTGAAG	3 cut(s)	1362, 1473, 1584
Eco88I	CYCGRG	3 cut(s)	192, 291, 748
EcoRI	GAATTC	3 cut(s)	1430, 1766, 2054
EcoRII	CCWGG	3 cut(s)	1435, 1631, 1951
EcoRV	GATATC	1 cut(s)	1068
EcoT14I	CCWWGG	3 cut(s)	1107, 1338, 1776
EcoT38I	GRGCYC	1 cut(s)	72
EgeI	GGCGCC	1 cut(s)	1368
EheI	GGCGCC	1 cut(s)	1368
ErhI	CCWWGG	3 cut(s)	1107, 1338, 1776
FaeI	CATG	9 cut(s)	156, 481, 647, 728, 739, 1171, 1780, 1915, 2071
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	1 cut(s)	1008
FatI	CATG	9 cut(s)	152, 477, 643, 724, 735, 1167, 1776, 1911, 2067
FauI	CCCGC	4 cut(s)	581, 674, 680, 1127
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	8 cut(s)	458, 461, 464, 467, 470, 473, 625, 1940
FokI	GGATG	5 cut(s)	866, 1019, 1031, 1895, 1916
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	8 cut(s)	458, 461, 464, 467, 470, 473, 625, 1940
FspBI	CTAG	3 cut(s)	20, 1185, 1739
GlaI	GCGC	2 cut(s)	605, 1368
GluI	GCNGC	8 cut(s)	458, 461, 464, 467, 470, 473, 625, 1940
GsuI	CTGGAG	1 cut(s)	1833
HaeII	RGCGCY	1 cut(s)	1370
HaeIII	GGCC	2 cut(s)	557, 681
HapII	CCGG	2 cut(s)	558, 656
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	2 cut(s)	606, 1369
Hin1I	GRCGYC	3 cut(s)	528, 591, 1367
Hin1II	CATG	9 cut(s)	156, 481, 647, 728, 739, 1171, 1780, 1915, 2071
Hin6I	GCGC	2 cut(s)	604, 1367
HinP1I	GCGC	2 cut(s)	604, 1367
HincII	GTYRAC	1 cut(s)	1909
HindII	GTYRAC	1 cut(s)	1909
HinfI	GANTC	8 cut(s)	341, 368, 659, 1256, 1289, 1757, 1817, 1979
HpaII	CCGG	2 cut(s)	558, 656
HphI	GGTGA	2 cut(s)	1451, 2026
Hpy166II	GTNNAC	3 cut(s)	499, 715, 1909
Hpy188III	TCNNGA	9 cut(s)	267, 656, 725, 838, 1168, 1314, 1361, 1812, 1871
Hpy8I	GTNNAC	3 cut(s)	499, 715, 1909
Hpy99I	CGWCG	4 cut(s)	225, 527, 593, 596
HpyAV	CCTTC	7 cut(s)	731, 826, 1132, 1380, 1497, 1528, 1608
HpyCH4III	ACNGT	4 cut(s)	118, 211, 496, 1199
HpyCH4IV	ACGT	5 cut(s)	128, 220, 591, 1750, 1867
HpyCH4V	TGCA	5 cut(s)	997, 1693, 1700, 1808, 1939
HpyF10VI	GCNNNNNNNGC	7 cut(s)	296, 463, 466, 469, 472, 687, 750
HpyF3I	CTNAG	8 cut(s)	428, 780, 966, 1245, 1469, 1659, 1899, 1983
HpySE526I	ACGT	5 cut(s)	128, 220, 591, 1750, 1867
Hsp92I	GRCGYC	3 cut(s)	528, 591, 1367
Hsp92II	CATG	9 cut(s)	156, 481, 647, 728, 739, 1171, 1780, 1915, 2071
HspAI	GCGC	2 cut(s)	604, 1367
KasI	GGCGCC	1 cut(s)	1366
Kpn2I	TCCGGA	1 cut(s)	655
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
Kzo9I	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
LguI	GCTCTTC	2 cut(s)	440, 1884
LmnI	GCTCC	6 cut(s)	510, 581, 601, 703, 749, 1936
Lsp1109I	GCAGC	5 cut(s)	475, 478, 481, 484, 1951
LweI	GCATC	2 cut(s)	1817, 1822
MabI	ACCWGGT	1 cut(s)	1631
MaeI	CTAG	3 cut(s)	20, 1185, 1739
MaeII	ACGT	5 cut(s)	128, 220, 591, 1750, 1867
MaeIII	GTNAC	4 cut(s)	205, 595, 1516, 1627
MalI	GATC	7 cut(s)	351, 411, 923, 1148, 1474, 2001, 2005
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
MflI	RGATCY	1 cut(s)	1472
MhlI	GDGCHC	3 cut(s)	72, 292, 708
Mly113I	GGCGCC	1 cut(s)	1367
MlyI	GAGTC	2 cut(s)	377, 1973
MmeI	TCCRAC	1 cut(s)	532
MroI	TCCGGA	1 cut(s)	655
MroNI	GCCGGC	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	1063
MspI	CCGG	2 cut(s)	558, 656
MspR9I	CCNGG	3 cut(s)	1437, 1633, 1953
Mva1269I	GAATGC	1 cut(s)	1356
MvaI	CCWGG	3 cut(s)	1437, 1633, 1953
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	7 cut(s)	296, 463, 466, 469, 472, 687, 750
NaeI	GCCGGC	1 cut(s)	559
NarI	GGCGCC	1 cut(s)	1367
NcoI	CCATGG	1 cut(s)	1776
NdeII	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
NgoMIV	GCCGGC	1 cut(s)	557
NlaIII	CATG	9 cut(s)	156, 481, 647, 728, 739, 1171, 1780, 1915, 2071
NlaIV	GGNNCC	3 cut(s)	1024, 1105, 1368
NmuCI	GTSAC	2 cut(s)	205, 595
NspI	RCATGY	3 cut(s)	156, 739, 1915
NspV	TTCGAA	2 cut(s)	911, 1085
PaeR7I	CTCGAG	1 cut(s)	748
PagI	TCATGA	2 cut(s)	724, 1167
PciI	ACATGT	2 cut(s)	152, 735
PciSI	GCTCTTC	2 cut(s)	440, 1884
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	1 cut(s)	1356
PdiI	GCCGGC	1 cut(s)	559
PfeI	GAWTC	6 cut(s)	341, 659, 1256, 1289, 1757, 1817
PflFI	GACNNNGTC	3 cut(s)	367, 527, 593
PflMI	CCANNNNNTGG	1 cut(s)	1223
PfoI	TCCNGGA	1 cut(s)	1951
PkrI	GCNGC	8 cut(s)	459, 462, 465, 468, 471, 474, 626, 1941
Ple19I	CGATCG	1 cut(s)	412
PleI	GAGTC	2 cut(s)	376, 1973
PluTI	GGCGCC	1 cut(s)	1370
PpsI	GAGTC	2 cut(s)	376, 1973
PscI	ACATGT	2 cut(s)	152, 735
Psp1406I	AACGTT	1 cut(s)	1750
Psp6I	CCWGG	3 cut(s)	1435, 1631, 1951
PspGI	CCWGG	3 cut(s)	1435, 1631, 1951
PspN4I	GGNNCC	3 cut(s)	1024, 1105, 1368
PspPI	GGNCC	4 cut(s)	252, 679, 1022, 1104
PspXI	VCTCGAGB	1 cut(s)	748
PstI	CTGCAG	1 cut(s)	1941
PstNI	CAGNNNCTG	1 cut(s)	1802
PsuI	RGATCY	1 cut(s)	1472
PsyI	GACNNNGTC	3 cut(s)	367, 527, 593
PvuI	CGATCG	1 cut(s)	412
RsaI	GTAC	5 cut(s)	85, 226, 500, 740, 1411
RsaNI	GTAC	5 cut(s)	84, 225, 499, 739, 1410
RseI	CAYNNNNRTG	1 cut(s)	482
SapI	GCTCTTC	2 cut(s)	440, 1884
SatI	GCNGC	8 cut(s)	458, 461, 464, 467, 470, 473, 625, 1940
Sau3AI	GATC	7 cut(s)	349, 409, 921, 1146, 1472, 1999, 2003
Sau96I	GGNCC	4 cut(s)	252, 679, 1022, 1104
ScaI	AGTACT	1 cut(s)	1411
SchI	GAGTC	2 cut(s)	377, 1973
ScrFI	CCNGG	3 cut(s)	1437, 1633, 1953
SduI	GDGCHC	3 cut(s)	72, 292, 708
SexAI	ACCWGGT	1 cut(s)	1631
SfaNI	GCATC	2 cut(s)	1817, 1822
SfcI	CTRYAG	1 cut(s)	1937
SfoI	GGCGCC	1 cut(s)	1368
Sfr274I	CTCGAG	1 cut(s)	748
SfuI	TTCGAA	2 cut(s)	911, 1085
SinI	GGWCC	3 cut(s)	252, 1022, 1104
SlaI	CTCGAG	1 cut(s)	748
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	3 cut(s)	698, 748, 838
SmoI	CTYRAG	3 cut(s)	698, 748, 838
SspDI	GGCGCC	1 cut(s)	1366
SspMI	CTAG	3 cut(s)	20, 1185, 1739
StyD4I	CCNGG	3 cut(s)	1435, 1631, 1951
StyI	CCWWGG	3 cut(s)	1107, 1338, 1776
TaaI	ACNGT	4 cut(s)	118, 211, 496, 1199
TaiI	ACGT	5 cut(s)	131, 223, 594, 1753, 1870
TaqI	TCGA	8 cut(s)	522, 749, 762, 911, 924, 1085, 1841, 2002
TatI	WGTACW	3 cut(s)	498, 738, 1409
TauI	GCSGC	3 cut(s)	460, 463, 627
TfiI	GAWTC	6 cut(s)	341, 659, 1256, 1289, 1757, 1817
TscAI	CASTG	7 cut(s)	121, 489, 501, 626, 1204, 1608, 2092
TseFI	GTSAC	2 cut(s)	205, 595
TseI	GCWGC	5 cut(s)	463, 466, 469, 472, 1939
Tsp45I	GTSAC	2 cut(s)	205, 595
TspDTI	ATGAA	8 cut(s)	153, 713, 1156, 1206, 1565, 1626, 1761, 1899
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	7 cut(s)	121, 489, 501, 626, 1204, 1608, 2092
Tth111I	GACNNNGTC	3 cut(s)	367, 527, 593
Van91I	CCANNNNNTGG	1 cut(s)	1223
VpaK11BI	GGWCC	3 cut(s)	252, 1022, 1104
XceI	RCATGY	3 cut(s)	156, 739, 1915
XhoI	CTCGAG	1 cut(s)	748
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	3 cut(s)	20, 1185, 1739
ZraI	GACGTC	1 cut(s)	592
ZrmI	AGTACT	1 cut(s)	1411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.