Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Reverse (-)

21316090 .. 21318884

Gene Structure 2795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCGGCAATAATGGTGCTGGAGTAGATAATACTTTCAGAAGGAAATTCGATCGAGAAGAGTTCTTGGAGCGAGCTCGTGAGCGTGAAAGACAGGAGGAGGAGGGAGGACCGCATAAATCCAAATCGAAAGGCCCGCCAGTGCAAAGGAAGCCATTGAAGCACAGGGATTATGAAGTGGATCTCAATTCTCGCTTGGGGAAAACACAGGTTGTTACTCCAATAGCACCTCTAAGCCAGCAGGCTGGATACTATTGTTCGGTTTGTGAGTGTGTTGTAAAAGATTCTGCAAACTACTTGGATCGATATCAATGGCAAGAAACATCAAAGAGCTTTGGGTATGTCTATGCGGGTGGAGCGGGCATCTCTCCAACAGGTTCAGGAACGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

131

Amino Acids

14.53

Weight (kDa)

8.77

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	4 cut(s)	113, 137, 350, 359
AclWI	GGATC	2 cut(s)	189, 309
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	2 cut(s)	77, 333
AluI	AGCT	2 cut(s)	77, 333
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	189, 309
AoxI	GGCC	2 cut(s)	3, 133
ApoI	RAATTY	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	110, 134
AvaII	GGWCC	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	110, 134
BmsI	GCATC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	42
Bsa29I	ATCGAT	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	113, 116
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	5, 135
BshVI	ATCGAT	1 cut(s)	304
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	6
BsnI	GGCC	2 cut(s)	5, 135
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	52, 181, 301
BspACI	CCGC	4 cut(s)	113, 137, 350, 359
BspANI	GGCC	2 cut(s)	5, 135
BspDI	ATCGAT	1 cut(s)	304
BspPI	GGATC	2 cut(s)	189, 309
BsrBI	CCGCTC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	3 cut(s)	52, 181, 301
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	6 cut(s)	7, 75, 137, 239, 243, 361
BstDEI	CTNAG	1 cut(s)	233
BstKTI	GATC	3 cut(s)	55, 184, 304
BstMBI	GATC	3 cut(s)	52, 181, 301
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 160, 356
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	5, 135
BsuTUI	ATCGAT	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	6 cut(s)	7, 75, 137, 239, 243, 361
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	110, 134
ClaI	ATCGAT	1 cut(s)	304
CviJI	RGCY	7 cut(s)	5, 77, 135, 154, 237, 245, 333
CviKI_1	RGCY	7 cut(s)	5, 77, 135, 154, 237, 245, 333
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	3 cut(s)	54, 183, 303
DpnII	GATC	3 cut(s)	52, 181, 301
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	79
FaiI	YATR	4 cut(s)	117, 174, 342, 348
FauI	CCCGC	3 cut(s)	144, 343, 352
FriOI	GRGCYC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	5, 135
HapII	CCGG	1 cut(s)	6
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	56, 80, 381
HpyAV	CCTTC	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	145, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 160, 356
HpyF3I	CTNAG	1 cut(s)	233
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	52, 181, 301
LmnI	GCTCC	2 cut(s)	70, 356
LweI	GCATC	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	3 cut(s)	54, 183, 303
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	3 cut(s)	52, 181, 301
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	47, 187
MnlI	CCTC	5 cut(s)	91, 94, 97, 101, 240
MroNI	GCCGGC	1 cut(s)	5
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	151, 160, 356
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	3 cut(s)	52, 181, 301
NgoMIV	GCCGGC	1 cut(s)	5
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	284
Ple19I	CGATCG	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	110, 134
PsuI	RGATCY	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	79
Sau3AI	GATC	3 cut(s)	52, 181, 301
Sau96I	GGNCC	2 cut(s)	110, 134
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	5 cut(s)	79, 213, 232, 335, 379
SfaNI	GCATC	1 cut(s)	372
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	2 cut(s)	47, 187
SsiI	CCGC	4 cut(s)	113, 137, 350, 359
SstI	GAGCTC	1 cut(s)	79
TaqI	TCGA	4 cut(s)	51, 55, 128, 304
TasI	AATT	2 cut(s)	47, 187
TfiI	GAWTC	1 cut(s)	284
TscAI	CASTG	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.