Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004062

Physical Location & Seq

Genomic Coordinates Forward (+)

21523969 .. 21526035

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTCAAGAAGTTAATTATTTGGGGAGGATGGTTAGGGTTTTCTACTGAAGAGGTGTCTGCACAAAATCAAGTTAAGGCATCTGTCCAGCGCAAAATTCGGCAGAGTATTGCAGATGAGTACCCGGGACTCGAACAGGTGTTGGAAGATTTGATCCCAAAGAAATCTCCTCTTATTGTGGCTAAATGTCAGAACCATCTAAATTTGGTAGTGGTAAACAACGTGCCACTATTTTTCAACATTCGTGATGGACCATATATGCCTACCCTAAGACTTCTTCATCAATATCCAGACATAATGAAAAAGTTGCAAGTAGATAGGGGTGCCATAAGGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCAGGTCTAACTTCTCCCGGTGGTGCTTTGGATGATGAAGTTGGTGCAGAAACTCCCGTGGCAATAATGGCAGAAGGAAAACAACATGCTCTTGCAATTGGCTTCACAAAAATGTCAGCAAAAGAAATAAGAGATATCAACAAGGGAATCGGAGTTGACAACATGCACTATCTTAACGATGGCCTTTGGAAGATGGAACATCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016032 GO:0016043 GO:0019080 GO:0019081 GO:0019538 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0032790 GO:0032984 GO:0032988 GO:0034622 GO:0034641 GO:0034645 GO:0042127 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051704 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0075522 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PUA

Protein Analysis

191

Amino Acids

21.15

Weight (kDa)

6.97

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-PUA	PF17832	16 - 97	5.2e-29	Pre-PUA-like domain
PUA	PF01472	101 - 179	5.4e-17	PUA domain
PUA_elF2D	PF26292	109 - 181	2.4e-12	elF2D, PUA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09150
fragaria_vesca	FvH4_6g06770
malus_domestica	MD04G1083700.v1.1 MD04G1198400.v1.1 MD12G1211900.v1.1
prunus_persica	Prupe.6G319400_v2.0.a1 Prupe.6G319400_v2.0.a1
pyrus_communis	pycom04g17550 pycom12g19810
rosa_chinensis	RchiOBHm_Chr3g0456101 RchiOBHm_Chr3g0483991
rosa_laevigata	RLG00000002518 RLG00000002522 RLG00000018859 RLG00000019929 RLG00000025319 RLG00000028850
rosa_multiflora	Rmu_sc0000279.1_g000047 Rmu_sc0001861.1_g000005
rosa_roxburghii	Rroxscaffold_1G00004160 Rroxscaffold_3G00240820 Rroxscaffold_6G00423210 Rroxscaffold_6G00423740
rosa_rugosa	Rorug03G0011800
rosa_samantha	Rh3AG072000 Rh3BG073900 Rh3CG073200 Rh3DG075400 Rh5AG495100 Rh5CG230500
rosa_wichuraiana	Rw0G001790 Rw3G005820 Rw3G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	96, 202
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	7, 238
AjnI	CCWGG	1 cut(s)	364
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	544
ApoI	RAATTY	2 cut(s)	96, 202
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	3 cut(s)	125, 126, 381
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	323
BccI	CCATC	5 cut(s)	24, 204, 242, 536, 550
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	3 cut(s)	125, 126, 381
BfaI	CTAG	1 cut(s)	566
Bme1390I	CCNGG	4 cut(s)	125, 126, 366, 381
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	4 cut(s)	125, 126, 366, 381
BmsI	GCATC	1 cut(s)	89
BpuMI	CCSGG	3 cut(s)	125, 126, 381
BsaJI	CCNNGG	2 cut(s)	124, 420
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	124, 420
BseGI	GGATG	2 cut(s)	35, 400
BseRI	GAGGAG	1 cut(s)	159
BsgI	GTGCAG	2 cut(s)	45, 429
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	125, 381
BslFI	GGGAC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	124, 420
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	35, 400
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	2 cut(s)	452, 529
BstSCI	CCNGG	4 cut(s)	123, 124, 364, 379
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	35, 400
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	251
Cfr9I	CCCGGG	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	449, 526
CviJI	RGCY	3 cut(s)	182, 465, 546
CviKI_1	RGCY	3 cut(s)	182, 465, 546
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	499
FaeI	CATG	2 cut(s)	452, 529
FaiI	YATR	8 cut(s)	256, 258, 260, 296, 329, 356, 450, 527
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	448, 525
FokI	GGATG	2 cut(s)	42, 407
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	2 cut(s)	125, 381
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	452, 529
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	129, 510
HpaII	CCGG	2 cut(s)	125, 381
Hpy166II	GTNNAC	2 cut(s)	217, 520
Hpy188I	TCNGA	2 cut(s)	192, 515
Hpy188III	TCNNGA	4 cut(s)	7, 245, 290, 566
Hpy8I	GTNNAC	2 cut(s)	217, 520
HpyAV	CCTTC	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	7 cut(s)	62, 113, 310, 350, 410, 458, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	452, 529
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	101, 122, 138, 303, 330, 351, 378, 394
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	222
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	4 cut(s)	62, 158, 269, 565
MfeI	CAATTG	1 cut(s)	459
MluCI	AATT	4 cut(s)	15, 96, 202, 459
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	3 cut(s)	20, 46, 180
MseI	TTAA	3 cut(s)	14, 75, 537
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	2 cut(s)	125, 381
MspR9I	CCNGG	4 cut(s)	125, 126, 366, 381
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	3 cut(s)	125, 126, 381
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	452, 529
NlaIV	GGNNCC	1 cut(s)	325
NspI	RCATGY	2 cut(s)	452, 529
PfeI	GAWTC	1 cut(s)	510
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	14, 75, 537
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	4 cut(s)	125, 126, 366, 381
SetI	ASST	5 cut(s)	57, 141, 225, 335, 370
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	251
SmaI	CCCGGG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	4 cut(s)	15, 96, 202, 459
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	4 cut(s)	123, 124, 364, 379
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	132
TasI	AATT	4 cut(s)	15, 96, 202, 459
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	3 cut(s)	14, 75, 537
Tru9I	TTAA	3 cut(s)	14, 75, 537
TspDTI	ATGAA	3 cut(s)	269, 314, 414
TspMI	CCCGGG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	2 cut(s)	96, 202
XbaI	TCTAGA	1 cut(s)	565
XceI	RCATGY	2 cut(s)	452, 529
XmaI	CCCGGG	1 cut(s)	124
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.