Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002749

Physical Location & Seq

Genomic Coordinates Forward (+)

1799030 .. 1801748

Gene Structure 2719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTCAACACGAAAAACAGAGTTCAGAAGAAGGGAGGTTGGTGGAGGCAATTCCGGTTGCTCCTAAAGCGTGCATGGATGCAGGCTTCTCGTGATGGACCAACAAATAAAGTTCGGGCAAGAATGTCAGTTGCATCAGCAGTCATATTTGGTTCAGTTTTTTGGAGAATGGGAAGATCTCAGACATCAATACAAGACAGAATGGGATTGCTTCAGGTTGCTGTAATAAACACAGCAATGGCTGCTCTCACAAAGACTGTGGGTGTGTTCCCGAAGGAGCGTGCAATAGTAAATAGAGAACACGCTAAAGGGTCTTATACATTAGGACCCTATCTTCTATCTAAGTTGTTGGCTGAGATTCCTGTTGGGTCAGCATTTCCATTAATGTTCGGAGCCATTTTGTACCCCATGGCTCGTCTTCATCCTACTTTATCCAGATTTGGGAAGTTTTGTGGTATTGTGACGGTGGAATCTTTTGCGGCCTCTGCTATGGGTCTAACTGTTGGCGCTATGGTTCCAACCACTGAAGCAGCTATGGCCGTGGGACCCTCACTTATGACAGTTTTTCTTGTATTTGGAGGCTATTATGTCAATGCAGAGAATACACCAATCATCTTTCGTTGGATTCCTAGTGTCTCTCTAATTAGATGGGCCTTTCAAGGTCTTTGCATCAATGAGTTTAGGGGTCTTCAATTTGATCATCAGCATTCTTACGATATTCAAAACGGAGAGCAGGCACTTGAACGCATCTCTTTCGGAGGAAGTCACATTAGGGAGACATTGGTAGCTCAAAGTAGAATACTGTTGTTTTGGTATAGCACCACTTACCTTCTCCTTCAGAAAAACAAACCGAAACACCAGCTGCTGGAGGCCGCACCTCTTGACCAAATCCAACCAGCGGTGCAACTTGAGCTCTTAAATACCGAACAAGATGAACAAAACGAGCCAAATGAAGATAATGAACAACCTGTAACAGTTGAAAAAGTCGAATTAAACCAGCCACCAAGTGAATCACCTCCGATTGACTTTGTCCTAGAAGGTGCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031967 GO:0031975 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

350

Amino Acids

39.08

Weight (kDa)

9.28

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	16 - 227	2.2e-49	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320 AT2G01320
fragaria_vesca	FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200 FvH4_4g32200
malus_domestica	MD13G1027300.v1.1 MD16G1030400.v1.1
prunus_persica	Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1 Prupe.1G322600_v2.0.a1
pyrus_communis	pycom13g02600 pycom13g02610 pycom16g02600 pycom16g02640
rosa_chinensis	RchiOBHm_Chr4g0440941
rosa_laevigata	RLG00000006138 RLG00000036411
rosa_multiflora	Rmu_co8376807.1_g000001 Rmu_sc0000424.1_g000024 Rmu_sc0005054.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381800 Rroxscaffold_6G00425080
rosa_rugosa	Rorug04G0329400 Rorug04G0329500
rosa_samantha	Rh2AG107500 Rh4AG381300 Rh4BG394500 Rh4CG052700 Rh4CG409400 Rh4DG387800
rosa_wichuraiana	Rw4G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	865
AciI	CCGC	3 cut(s)	479, 873, 899
AcoI	YGGCCR	1 cut(s)	537
AcuI	CTGAAG	3 cut(s)	197, 546, 821
AdeI	CACNNNGTG	1 cut(s)	1007
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	441, 865, 898
AgsI	TTSAA	6 cut(s)	7, 659, 692, 722, 743, 980
AluBI	AGCT	4 cut(s)	533, 788, 862, 913
AluI	AGCT	4 cut(s)	533, 788, 862, 913
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	2 cut(s)	640, 770
AlwNI	CAGNNNCTG	1 cut(s)	865
AoxI	GGCC	4 cut(s)	480, 537, 651, 870
ApeKI	GCWGC	3 cut(s)	242, 530, 862
AseI	ATTAAT	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	4 cut(s)	98, 326, 545, 651
AsuHPI	GGTGA	1 cut(s)	1005
AvaII	GGWCC	3 cut(s)	98, 326, 545
BanII	GRGCYC	1 cut(s)	915
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	410, 680
Bbv12I	GWGCWC	1 cut(s)	915
BbvI	GCAGC	3 cut(s)	229, 542, 849
BccI	CCATC	2 cut(s)	89, 642
BceAI	ACGGC	1 cut(s)	524
BcgI	CGANNNNNNTGC	4 cut(s)	71, 105, 736, 770
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	640, 770
BfaI	CTAG	2 cut(s)	630, 1034
BfoI	RGCGCY	1 cut(s)	510
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	5 cut(s)	243, 480, 531, 863, 873
BlsI	GCNGC	5 cut(s)	244, 481, 532, 864, 874
Bme18I	GGWCC	3 cut(s)	98, 326, 545
BmgT120I	GGNCC	4 cut(s)	98, 326, 545, 651
BmiI	GGNNCC	5 cut(s)	328, 394, 516, 546, 547
BmsI	GCATC	4 cut(s)	69, 143, 678, 756
BpiI	GAAGAC	2 cut(s)	410, 680
BpmI	CTGGAG	1 cut(s)	887
BpuEI	CTTGAG	1 cut(s)	929
BsaJI	CCNNGG	2 cut(s)	408, 540
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 865, 898
Bse3DI	GCAATG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	408, 540
BseGI	GGATG	2 cut(s)	84, 421
BseLI	CCNNNNNNNGG	3 cut(s)	441, 865, 898
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	194, 345
BseXI	GCAGC	3 cut(s)	229, 542, 849
BshFI	GGCC	4 cut(s)	482, 539, 653, 872
BsiHKAI	GWGCWC	1 cut(s)	915
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	441, 865, 898
BsmAI	GTCTC	2 cut(s)	640, 770
BsmFI	GGGAC	1 cut(s)	558
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	4 cut(s)	482, 539, 653, 872
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp143I	GATC	2 cut(s)	176, 697
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	3 cut(s)	479, 873, 899
BspANI	GGCC	4 cut(s)	482, 539, 653, 872
BspCNI	CTCAG	2 cut(s)	193, 346
BspLI	GGNNCC	5 cut(s)	328, 394, 516, 546, 547
BsrDI	GCAATG	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	408, 540
BssMI	GATC	2 cut(s)	176, 697
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	6 cut(s)	259, 466, 502, 562, 804, 976
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	4 cut(s)	72, 84, 282, 735
BstDEI	CTNAG	4 cut(s)	180, 342, 354, 1044
BstDSI	CCRYGG	2 cut(s)	408, 540
BstF5I	GGATG	2 cut(s)	84, 421
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	179, 700
BstMAI	GTCTC	2 cut(s)	640, 770
BstMBI	GATC	2 cut(s)	176, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 242, 485, 536, 910
BstV1I	GCAGC	3 cut(s)	229, 542, 849
BstV2I	GAAGAC	2 cut(s)	410, 680
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	482, 539, 653, 872
BtgI	CCRYGG	2 cut(s)	408, 540
BtsCI	GGATG	2 cut(s)	84, 421
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	4 cut(s)	72, 84, 282, 735
CaiI	CAGNNNCTG	1 cut(s)	865
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	4 cut(s)	98, 326, 545, 651
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	2 cut(s)	75, 409
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	4 cut(s)	180, 342, 354, 1044
DpnI	GATC	2 cut(s)	178, 699
DpnII	GATC	2 cut(s)	176, 697
DraIII	CACNNNGTG	1 cut(s)	1007
EaeI	YGGCCR	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	915
Eco47I	GGWCC	3 cut(s)	98, 326, 545
Eco53kI	GAGCTC	1 cut(s)	913
Eco57I	CTGAAG	3 cut(s)	197, 546, 821
EcoICRI	GAGCTC	1 cut(s)	913
EcoO109I	RGGNCCY	2 cut(s)	326, 545
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	78, 412
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	2 cut(s)	74, 408
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	5 cut(s)	243, 480, 531, 863, 873
FokI	GGATG	2 cut(s)	91, 408
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	5 cut(s)	243, 480, 531, 863, 873
FspBI	CTAG	2 cut(s)	630, 1034
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	5 cut(s)	243, 480, 531, 863, 873
GsuI	CTGGAG	1 cut(s)	887
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	482, 539, 653, 872
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	2 cut(s)	78, 412
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	4 cut(s)	358, 470, 625, 1010
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	1005
Hpy188I	TCNGA	6 cut(s)	27, 183, 392, 758, 840, 1020
Hpy188III	TCNNGA	4 cut(s)	92, 271, 435, 881
HpyAV	CCTTC	5 cut(s)	25, 268, 839, 845, 1031
HpyCH4III	ACNGT	6 cut(s)	259, 466, 502, 562, 804, 976
HpyCH4V	TGCA	7 cut(s)	74, 82, 134, 284, 596, 669, 904
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 242, 485, 536, 910
HpyF3I	CTNAG	4 cut(s)	180, 342, 354, 1044
Hsp92II	CATG	2 cut(s)	78, 412
HspAI	GCGC	1 cut(s)	507
KflI	GGGWCCC	1 cut(s)	545
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	176, 697
LmnI	GCTCC	3 cut(s)	66, 277, 392
Lsp1109I	GCAGC	3 cut(s)	229, 542, 849
LweI	GCATC	4 cut(s)	69, 143, 678, 756
MaeI	CTAG	2 cut(s)	630, 1034
MaeIII	GTNAC	3 cut(s)	460, 764, 970
MalI	GATC	2 cut(s)	178, 699
MboI	GATC	2 cut(s)	176, 697
MboII	GAAGA	6 cut(s)	40, 186, 326, 410, 680, 965
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	915
MluCI	AATT	4 cut(s)	50, 642, 692, 989
MmeI	TCCRAC	3 cut(s)	542, 602, 916
MnlI	CCTC	9 cut(s)	29, 39, 493, 559, 572, 752, 862, 888, 1026
MseI	TTAA	3 cut(s)	383, 917, 992
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	862, 899
MspI	CCGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	706
MwoI	GCNNNNNNNGC	5 cut(s)	67, 242, 485, 536, 910
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	2 cut(s)	176, 697
NlaIII	CATG	2 cut(s)	78, 412
NlaIV	GGNNCC	5 cut(s)	328, 394, 516, 546, 547
NmuCI	GTSAC	2 cut(s)	460, 764
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	4 cut(s)	358, 470, 625, 1010
PflFI	GACNNNGTC	1 cut(s)	1028
PflMI	CCANNNNNTGG	1 cut(s)	865
PkrI	GCNGC	5 cut(s)	244, 481, 532, 864, 874
PpuMI	RGGWCCY	2 cut(s)	326, 545
PshBI	ATTAAT	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	915
Psp5II	RGGWCCY	2 cut(s)	326, 545
PspN4I	GGNNCC	5 cut(s)	328, 394, 516, 546, 547
PspPI	GGNCC	4 cut(s)	98, 326, 545, 651
PspPPI	RGGWCCY	2 cut(s)	326, 545
PstNI	CAGNNNCTG	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	1028
PvuII	CAGCTG	1 cut(s)	862
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	3 cut(s)	383, 917, 992
SatI	GCNGC	5 cut(s)	243, 480, 531, 863, 873
Sau3AI	GATC	2 cut(s)	176, 697
Sau96I	GGNCC	4 cut(s)	98, 326, 545, 651
SduI	GDGCHC	1 cut(s)	915
SfaNI	GCATC	4 cut(s)	69, 143, 678, 756
SinI	GGWCC	3 cut(s)	98, 326, 545
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
Sse9I	AATT	4 cut(s)	50, 642, 692, 989
SsiI	CCGC	3 cut(s)	479, 873, 899
SspMI	CTAG	2 cut(s)	630, 1034
SstI	GAGCTC	1 cut(s)	915
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	6 cut(s)	259, 466, 502, 562, 804, 976
TaqI	TCGA	1 cut(s)	987
TasI	AATT	4 cut(s)	50, 642, 692, 989
TauI	GCSGC	2 cut(s)	482, 875
TfiI	GAWTC	4 cut(s)	358, 470, 625, 1010
Tru1I	TTAA	3 cut(s)	383, 917, 992
Tru9I	TTAA	3 cut(s)	383, 917, 992
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	460, 764
TseI	GCWGC	3 cut(s)	242, 530, 862
Tsp45I	GTSAC	2 cut(s)	460, 764
TspDTI	ATGAA	4 cut(s)	410, 948, 966, 975
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	1 cut(s)	529
Tth111I	GACNNNGTC	1 cut(s)	1028
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	3 cut(s)	98, 326, 545
VspI	ATTAAT	1 cut(s)	383
XspI	CTAG	2 cut(s)	630, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.