Produces ATP from ADP in the presence of a proton gradient across the membrane
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08670 AT5G08680 AT5G08690 |
| fragaria_vesca | FvH4_4g26290 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 |
| malus_domestica | MD06G1223200.v1.1 MD13G1031500.v1.1 MD16G1033600.v1.1 |
| prunus_persica | Prupe.1G320700_v2.0.a1 Prupe.5G228300_v2.0.a1 |
| pyrus_communis | pycom06g19890 pycom13g02750 pycom16g02820 |
| rosa_chinensis | RchiOBHm_Chr4g0433891 RchiOBHm_Chr7g0179061 |
| rosa_laevigata | RLG00000005389 RLG00000006719 |
| rosa_multiflora | Rmu_sc0000580.1_g000121 Rmu_sc0000888.1_g000014 Rmu_sc0026034.1_g000001 Rmu_ssc0000467.1_g000038 |
| rosa_roxburghii | Rroxscaffold_3G00274430 Rroxscaffold_5G00375290 |
| rosa_rugosa | Rorug04G0272100 Rorug06G0420600 |
| rosa_samantha | Rh4AG326900 Rh4BG334400 Rh4CG350100 Rh4DG331100 Rh5AG180000 Rh5AG520200 Rh7AG020000 Rh7AG221100 Rh7BG019700 Rh7CG020900 Rh7DG020400 Rh7DG020500 |
| rosa_wichuraiana | Rw2G024880 Rw4G028340 Rw6G005660 Rw7G001660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 496 |
| Acc36I | ACCTGC | 1 cut(s) | 496 |
| AccB1I | GGYRCC | 2 cut(s) | 158, 284 |
| AccI | GTMKAC | 1 cut(s) | 930 |
| AccII | CGCG | 7 cut(s) | 242, 384, 398, 410, 575, 693, 1083 |
| AclI | AACGTT | 1 cut(s) | 1026 |
| AclWI | GGATC | 5 cut(s) | 30, 345, 592, 898, 1470 |
| AcoI | YGGCCR | 2 cut(s) | 411, 1174 |
| AcsI | RAATTY | 2 cut(s) | 479, 803 |
| AcuI | CTGAAG | 3 cut(s) | 239, 1275, 1376 |
| AcyI | GRCGYC | 1 cut(s) | 285 |
| AfaI | GTAC | 4 cut(s) | 145, 395, 1078, 1100 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 128, 244, 280 |
| AgeI | ACCGGT | 1 cut(s) | 704 |
| AgsI | TTSAA | 2 cut(s) | 104, 818 |
| AjnI | CCWGG | 2 cut(s) | 513, 1192 |
| AleI | CACNNNNGTG | 3 cut(s) | 630, 1245, 1518 |
| AluBI | AGCT | 5 cut(s) | 141, 869, 1132, 1373, 1442 |
| AluI | AGCT | 5 cut(s) | 141, 869, 1132, 1373, 1442 |
| Alw21I | GWGCWC | 5 cut(s) | 612, 699, 1165, 1201, 1207 |
| Alw26I | GTCTC | 1 cut(s) | 441 |
| AlwI | GGATC | 5 cut(s) | 30, 345, 592, 898, 1470 |
| Ama87I | CYCGRG | 2 cut(s) | 319, 611 |
| AoxI | GGCC | 3 cut(s) | 235, 411, 1174 |
| ApeKI | GCWGC | 2 cut(s) | 855, 898 |
| ApoI | RAATTY | 2 cut(s) | 479, 803 |
| AsiGI | ACCGGT | 1 cut(s) | 704 |
| AspLEI | GCGC | 3 cut(s) | 287, 577, 693 |
| AspS9I | GGNCC | 2 cut(s) | 268, 648 |
| AsuC2I | CCSGG | 4 cut(s) | 41, 282, 457, 487 |
| AsuHPI | GGTGA | 5 cut(s) | 463, 475, 529, 644, 1148 |
| AvaI | CYCGRG | 2 cut(s) | 319, 611 |
| AvaII | GGWCC | 2 cut(s) | 268, 648 |
| BalI | TGGCCA | 1 cut(s) | 1176 |
| BanI | GGYRCC | 2 cut(s) | 158, 284 |
| BanII | GRGCYC | 4 cut(s) | 420, 774, 1191, 1227 |
| BauI | CACGAG | 2 cut(s) | 1200, 1206 |
| BbsI | GAAGAC | 2 cut(s) | 336, 1382 |
| Bbv12I | GWGCWC | 5 cut(s) | 612, 699, 1165, 1201, 1207 |
| BbvI | GCAGC | 2 cut(s) | 842, 910 |
| BccI | CCATC | 6 cut(s) | 222, 343, 656, 829, 1351, 1433 |
| BceAI | ACGGC | 2 cut(s) | 272, 512 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 920, 954 |
| BciT130I | CCWGG | 2 cut(s) | 515, 1194 |
| BciVI | GTATCC | 2 cut(s) | 1349, 1349 |
| BcnI | CCSGG | 4 cut(s) | 41, 282, 457, 487 |
| BcoDI | GTCTC | 1 cut(s) | 441 |
| BfaI | CTAG | 3 cut(s) | 179, 1133, 1166 |
| BfoI | RGCGCY | 1 cut(s) | 288 |
| BfuAI | ACCTGC | 1 cut(s) | 496 |
| BfuI | GTATCC | 2 cut(s) | 1349, 1349 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 410 |
| BglII | AGATCT | 1 cut(s) | 1534 |
| BisI | GCNGC | 6 cut(s) | 367, 405, 408, 411, 856, 899 |
| BlpI | GCTNAGC | 1 cut(s) | 621 |
| BlsI | GCNGC | 6 cut(s) | 368, 406, 409, 412, 857, 900 |
| Bme1390I | CCNGG | 6 cut(s) | 41, 282, 457, 487, 515, 1194 |
| Bme18I | GGWCC | 2 cut(s) | 268, 648 |
| BmeT110I | CYCGRG | 2 cut(s) | 319, 611 |
| BmgT120I | GGNCC | 2 cut(s) | 268, 648 |
| BmiI | GGNNCC | 4 cut(s) | 160, 286, 526, 1423 |
| BmrFI | CCNGG | 6 cut(s) | 41, 282, 457, 487, 515, 1194 |
| BmrI | ACTGGG | 1 cut(s) | 1230 |
| BmsI | GCATC | 4 cut(s) | 162, 338, 1240, 1499 |
| BmuI | ACTGGG | 1 cut(s) | 1230 |
| BpiI | GAAGAC | 2 cut(s) | 336, 1382 |
| BpmI | CTGGAG | 1 cut(s) | 855 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1032 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 621 |
| BpuEI | CTTGAG | 1 cut(s) | 599 |
| BpuMI | CCSGG | 4 cut(s) | 41, 282, 457, 487 |
| Bsa29I | ATCGAT | 2 cut(s) | 304, 1474 |
| BsaHI | GRCGYC | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 5 cut(s) | 39, 320, 408, 742, 1192 |
| BsaWI | WCCGGW | 2 cut(s) | 600, 704 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 516, 546, 694, 724 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 128, 244, 280 |
| Bse118I | RCCGGY | 1 cut(s) | 704 |
| Bse1I | ACTGG | 2 cut(s) | 919, 1225 |
| Bse3DI | GCAATG | 1 cut(s) | 651 |
| BseBI | CCWGG | 2 cut(s) | 515, 1194 |
| BseCI | ATCGAT | 2 cut(s) | 304, 1474 |
| BseDI | CCNNGG | 5 cut(s) | 39, 320, 408, 742, 1192 |
| BseGI | GGATG | 3 cut(s) | 329, 667, 1514 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 128, 244, 280 |
| BseMI | GCAATG | 1 cut(s) | 651 |
| BseMII | CTCAG | 6 cut(s) | 125, 404, 635, 660, 885, 1326 |
| BseNI | ACTGG | 2 cut(s) | 919, 1225 |
| BseRI | GAGGAG | 2 cut(s) | 563, 969 |
| BseX3I | CGGCCG | 1 cut(s) | 411 |
| BseXI | GCAGC | 2 cut(s) | 842, 910 |
| Bsh1236I | CGCG | 7 cut(s) | 242, 384, 398, 410, 575, 693, 1083 |
| Bsh1285I | CGRYCG | 4 cut(s) | 304, 402, 414, 501 |
| BshFI | GGCC | 3 cut(s) | 237, 413, 1176 |
| BshNI | GGYRCC | 2 cut(s) | 158, 284 |
| BshTI | ACCGGT | 1 cut(s) | 704 |
| BshVI | ATCGAT | 2 cut(s) | 304, 1474 |
| BsiEI | CGRYCG | 4 cut(s) | 304, 402, 414, 501 |
| BsiHKAI | GWGCWC | 5 cut(s) | 612, 699, 1165, 1201, 1207 |
| BsiHKCI | CYCGRG | 2 cut(s) | 319, 611 |
| BsiSI | CCGG | 6 cut(s) | 41, 281, 456, 486, 601, 705 |
| BslFI | GGGAC | 1 cut(s) | 679 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 128, 244, 280 |
| BsmAI | GTCTC | 1 cut(s) | 441 |
| BsmBI | CGTCTC | 1 cut(s) | 441 |
| BsmFI | GGGAC | 1 cut(s) | 679 |
| BsnI | GGCC | 3 cut(s) | 237, 413, 1176 |
| BsoBI | CYCGRG | 2 cut(s) | 319, 611 |
| Bsp1286I | GDGCHC | 9 cut(s) | 420, 612, 699, 774, 1165, 1191, 1201, 1207, 1227 |
| Bsp1407I | TGTACA | 2 cut(s) | 143, 1098 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 621 |
| Bsp68I | TCGCGA | 2 cut(s) | 242, 1083 |
| BspANI | GGCC | 3 cut(s) | 237, 413, 1176 |
| BspCNI | CTCAG | 6 cut(s) | 126, 403, 634, 661, 886, 1325 |
| BspDI | ATCGAT | 2 cut(s) | 304, 1474 |
| BspFNI | CGCG | 7 cut(s) | 242, 384, 398, 410, 575, 693, 1083 |
| BspHI | TCATGA | 1 cut(s) | 753 |
| BspLI | GGNNCC | 4 cut(s) | 160, 286, 526, 1423 |
| BspMI | ACCTGC | 1 cut(s) | 496 |
| BspPI | GGATC | 5 cut(s) | 30, 345, 592, 898, 1470 |
| BspQI | GCTCTTC | 1 cut(s) | 437 |
| BspT107I | GGYRCC | 2 cut(s) | 158, 284 |
| BsrDI | GCAATG | 1 cut(s) | 651 |
| BsrFI | RCCGGY | 1 cut(s) | 704 |
| BsrGI | TGTACA | 2 cut(s) | 143, 1098 |
| BsrI | ACTGG | 2 cut(s) | 919, 1225 |
| BssAI | RCCGGY | 1 cut(s) | 704 |
| BssECI | CCNNGG | 5 cut(s) | 39, 320, 408, 742, 1192 |
| BssNI | GRCGYC | 1 cut(s) | 285 |
| BssSI | CACGAG | 2 cut(s) | 1200, 1206 |
| BssT1I | CCWWGG | 1 cut(s) | 742 |
| Bst2BI | CACGAG | 2 cut(s) | 1200, 1206 |
| Bst2UI | CCWGG | 2 cut(s) | 515, 1194 |
| Bst4CI | ACNGT | 6 cut(s) | 427, 721, 1000, 1043, 1231, 1520 |
| Bst6I | CTCTTC | 1 cut(s) | 437 |
| BstACI | GRCGYC | 1 cut(s) | 285 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1267 |
| BstAUI | TGTACA | 2 cut(s) | 143, 1098 |
| BstC8I | GCNNGC | 4 cut(s) | 695, 888, 1146, 1455 |
| BstDEI | CTNAG | 7 cut(s) | 134, 390, 621, 669, 894, 1032, 1312 |
| BstDSI | CCRYGG | 1 cut(s) | 408 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 242 |
| BstF5I | GGATG | 3 cut(s) | 329, 667, 1514 |
| BstFNI | CGCG | 7 cut(s) | 242, 384, 398, 410, 575, 693, 1083 |
| BstH2I | RGCGCY | 1 cut(s) | 288 |
| BstHHI | GCGC | 3 cut(s) | 287, 577, 693 |
| BstMAI | GTCTC | 1 cut(s) | 441 |
| BstMCI | CGRYCG | 4 cut(s) | 304, 402, 414, 501 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 395, 404, 410, 583, 1267 |
| BstNI | CCWGG | 2 cut(s) | 515, 1194 |
| BstSCI | CCNGG | 6 cut(s) | 39, 280, 455, 485, 513, 1192 |
| BstUI | CGCG | 7 cut(s) | 242, 384, 398, 410, 575, 693, 1083 |
| BstV1I | GCAGC | 2 cut(s) | 842, 910 |
| BstV2I | GAAGAC | 2 cut(s) | 336, 1382 |
| BstX2I | RGATCY | 2 cut(s) | 903, 1534 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 233, 658 |
| BstYI | RGATCY | 2 cut(s) | 903, 1534 |
| BstZI | CGGCCG | 1 cut(s) | 411 |
| Bsu15I | ATCGAT | 2 cut(s) | 304, 1474 |
| BsuI | GTATCC | 2 cut(s) | 1349, 1349 |
| BsuRI | GGCC | 3 cut(s) | 237, 413, 1176 |
| BsuTUI | ATCGAT | 2 cut(s) | 304, 1474 |
| BtgI | CCRYGG | 1 cut(s) | 408 |
| BtsCI | GGATG | 3 cut(s) | 329, 667, 1514 |
| BtsIMutI | CAGTG | 2 cut(s) | 717, 1227 |
| BtuMI | TCGCGA | 2 cut(s) | 242, 1083 |
| BveI | ACCTGC | 1 cut(s) | 496 |
| Cac8I | GCNNGC | 4 cut(s) | 695, 888, 1146, 1455 |
| CciI | TCATGA | 1 cut(s) | 753 |
| CfoI | GCGC | 3 cut(s) | 287, 577, 693 |
| Cfr10I | RCCGGY | 1 cut(s) | 704 |
| Cfr13I | GGNCC | 2 cut(s) | 268, 648 |
| Cfr42I | CCGCGG | 1 cut(s) | 411 |
| ClaI | ATCGAT | 2 cut(s) | 304, 1474 |
| CseI | GACGC | 2 cut(s) | 373, 423 |
| Csp6I | GTAC | 4 cut(s) | 144, 394, 1077, 1099 |
| CspAI | ACCGGT | 1 cut(s) | 704 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1478, 1513 |
| CviAII | CATG | 2 cut(s) | 640, 754 |
| CviQI | GTAC | 4 cut(s) | 144, 394, 1077, 1099 |
| DdeI | CTNAG | 7 cut(s) | 134, 390, 621, 669, 894, 1032, 1312 |
| DinI | GGCGCC | 1 cut(s) | 286 |
| EaeI | YGGCCR | 2 cut(s) | 411, 1174 |
| EagI | CGGCCG | 1 cut(s) | 411 |
| Eam1104I | CTCTTC | 1 cut(s) | 437 |
| EarI | CTCTTC | 1 cut(s) | 437 |
| EciI | GGCGGA | 1 cut(s) | 267 |
| EclXI | CGGCCG | 1 cut(s) | 411 |
| Eco130I | CCWWGG | 1 cut(s) | 742 |
| Eco24I | GRGCYC | 4 cut(s) | 420, 774, 1191, 1227 |
| Eco32I | GATATC | 1 cut(s) | 793 |
| Eco47I | GGWCC | 2 cut(s) | 268, 648 |
| Eco52I | CGGCCG | 1 cut(s) | 411 |
| Eco57I | CTGAAG | 3 cut(s) | 239, 1275, 1376 |
| Eco88I | CYCGRG | 2 cut(s) | 319, 611 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 242 |
| EcoRI | GAATTC | 1 cut(s) | 479 |
| EcoRII | CCWGG | 2 cut(s) | 513, 1192 |
| EcoRV | GATATC | 1 cut(s) | 793 |
| EcoT14I | CCWWGG | 1 cut(s) | 742 |
| EcoT38I | GRGCYC | 4 cut(s) | 420, 774, 1191, 1227 |
| EgeI | GGCGCC | 1 cut(s) | 286 |
| EheI | GGCGCC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 1 cut(s) | 742 |
| Esp3I | CGTCTC | 1 cut(s) | 441 |
| FaeI | CATG | 2 cut(s) | 643, 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1254, 1286 |
| FaqI | GGGAC | 1 cut(s) | 679 |
| FatI | CATG | 2 cut(s) | 639, 753 |
| FblI | GTMKAC | 1 cut(s) | 930 |
| Fnu4HI | GCNGC | 6 cut(s) | 367, 405, 408, 411, 856, 899 |
| FokI | GGATG | 3 cut(s) | 316, 674, 1521 |
| FriOI | GRGCYC | 4 cut(s) | 420, 774, 1191, 1227 |
| Fsp4HI | GCNGC | 6 cut(s) | 367, 405, 408, 411, 856, 899 |
| FspBI | CTAG | 3 cut(s) | 179, 1133, 1166 |
| GlaI | GCGC | 3 cut(s) | 286, 576, 692 |
| GluI | GCNGC | 6 cut(s) | 367, 405, 408, 411, 856, 899 |
| GsuI | CTGGAG | 1 cut(s) | 855 |
| HaeII | RGCGCY | 1 cut(s) | 288 |
| HaeIII | GGCC | 3 cut(s) | 237, 413, 1176 |
| HapII | CCGG | 6 cut(s) | 41, 281, 456, 486, 601, 705 |
| HgaI | GACGC | 2 cut(s) | 373, 423 |
| HhaI | GCGC | 3 cut(s) | 287, 577, 693 |
| Hin1I | GRCGYC | 1 cut(s) | 285 |
| Hin1II | CATG | 2 cut(s) | 643, 757 |
| Hin6I | GCGC | 3 cut(s) | 285, 575, 691 |
| HinP1I | GCGC | 3 cut(s) | 285, 575, 691 |
| HincII | GTYRAC | 1 cut(s) | 931 |
| HindII | GTYRAC | 1 cut(s) | 931 |
| HinfI | GANTC | 3 cut(s) | 166, 452, 918 |
| HpaII | CCGG | 6 cut(s) | 41, 281, 456, 486, 601, 705 |
| HphI | GGTGA | 5 cut(s) | 463, 475, 529, 644, 1148 |
| Hpy166II | GTNNAC | 1 cut(s) | 931 |
| Hpy188I | TCNGA | 9 cut(s) | 219, 441, 524, 714, 1070, 1295, 1315, 1355, 1541 |
| Hpy188III | TCNNGA | 8 cut(s) | 241, 348, 568, 646, 754, 1082, 1394, 1528 |
| Hpy8I | GTNNAC | 1 cut(s) | 931 |
| Hpy99I | CGWCG | 5 cut(s) | 389, 479, 533, 536, 932 |
| HpyAV | CCTTC | 6 cut(s) | 238, 454, 726, 944, 1250, 1411 |
| HpyCH4III | ACNGT | 6 cut(s) | 427, 721, 1000, 1043, 1231, 1520 |
| HpyCH4IV | ACGT | 3 cut(s) | 759, 1026, 1075 |
| HpyCH4V | TGCA | 1 cut(s) | 858 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 395, 404, 410, 583, 1267 |
| HpyF3I | CTNAG | 7 cut(s) | 134, 390, 621, 669, 894, 1032, 1312 |
| HpySE526I | ACGT | 3 cut(s) | 759, 1026, 1075 |
| Hsp92I | GRCGYC | 1 cut(s) | 285 |
| Hsp92II | CATG | 2 cut(s) | 643, 757 |
| HspAI | GCGC | 3 cut(s) | 285, 575, 691 |
| KasI | GGCGCC | 1 cut(s) | 284 |
| KspI | CCGCGG | 1 cut(s) | 411 |
| LguI | GCTCTTC | 1 cut(s) | 437 |
| LmnI | GCTCC | 5 cut(s) | 524, 874, 946, 1396, 1487 |
| Lsp1109I | GCAGC | 2 cut(s) | 842, 910 |
| LweI | GCATC | 4 cut(s) | 162, 338, 1240, 1499 |
| MaeI | CTAG | 3 cut(s) | 179, 1133, 1166 |
| MaeII | ACGT | 3 cut(s) | 759, 1026, 1075 |
| MaeIII | GTNAC | 2 cut(s) | 910, 1525 |
| MboII | GAAGA | 4 cut(s) | 289, 336, 454, 1382 |
| MflI | RGATCY | 2 cut(s) | 903, 1534 |
| MhlI | GDGCHC | 9 cut(s) | 420, 612, 699, 774, 1165, 1191, 1201, 1207, 1227 |
| MlsI | TGGCCA | 1 cut(s) | 1176 |
| MluCI | AATT | 6 cut(s) | 74, 99, 111, 123, 479, 803 |
| MluNI | TGGCCA | 1 cut(s) | 1176 |
| Mly113I | GGCGCC | 1 cut(s) | 285 |
| MlyI | GAGTC | 1 cut(s) | 160 |
| MmeI | TCCRAC | 4 cut(s) | 709, 970, 1048, 1333 |
| Mox20I | TGGCCA | 1 cut(s) | 1176 |
| MscI | TGGCCA | 1 cut(s) | 1176 |
| MseI | TTAA | 3 cut(s) | 47, 378, 1128 |
| MslI | CAYNNNNRTG | 5 cut(s) | 630, 656, 1245, 1507, 1518 |
| Msp20I | TGGCCA | 1 cut(s) | 1176 |
| MspA1I | CMGCKG | 1 cut(s) | 410 |
| MspI | CCGG | 6 cut(s) | 41, 281, 456, 486, 601, 705 |
| MspR9I | CCNGG | 6 cut(s) | 41, 282, 457, 487, 515, 1194 |
| MvaI | CCWGG | 2 cut(s) | 515, 1194 |
| MvnI | CGCG | 7 cut(s) | 242, 384, 398, 410, 575, 693, 1083 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 395, 404, 410, 583, 1267 |
| NarI | GGCGCC | 1 cut(s) | 285 |
| NciI | CCSGG | 4 cut(s) | 41, 282, 457, 487 |
| NlaIII | CATG | 2 cut(s) | 643, 757 |
| NlaIV | GGNNCC | 4 cut(s) | 160, 286, 526, 1423 |
| NmeAIII | GCCGAG | 1 cut(s) | 439 |
| NmuCI | GTSAC | 1 cut(s) | 1525 |
| NruI | TCGCGA | 2 cut(s) | 242, 1083 |
| OliI | CACNNNNGTG | 3 cut(s) | 630, 1245, 1518 |
| PaeR7I | CTCGAG | 1 cut(s) | 611 |
| PagI | TCATGA | 1 cut(s) | 753 |
| PaqCI | CACCTGC | 1 cut(s) | 496 |
| PciSI | GCTCTTC | 1 cut(s) | 437 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 317, 431, 528 |
| PfeI | GAWTC | 2 cut(s) | 452, 918 |
| PfoI | TCCNGGA | 1 cut(s) | 455 |
| PinAI | ACCGGT | 1 cut(s) | 704 |
| PkrI | GCNGC | 6 cut(s) | 368, 406, 409, 412, 857, 900 |
| Ple19I | CGATCG | 2 cut(s) | 304, 501 |
| PleI | GAGTC | 1 cut(s) | 160 |
| PluTI | GGCGCC | 1 cut(s) | 288 |
| PpsI | GAGTC | 1 cut(s) | 160 |
| Psp1406I | AACGTT | 1 cut(s) | 1026 |
| Psp6I | CCWGG | 2 cut(s) | 513, 1192 |
| PspGI | CCWGG | 2 cut(s) | 513, 1192 |
| PspN4I | GGNNCC | 4 cut(s) | 160, 286, 526, 1423 |
| PspPI | GGNCC | 2 cut(s) | 268, 648 |
| PspXI | VCTCGAGB | 1 cut(s) | 611 |
| PsuI | RGATCY | 2 cut(s) | 903, 1534 |
| PvuI | CGATCG | 2 cut(s) | 304, 501 |
| RruI | TCGCGA | 2 cut(s) | 242, 1083 |
| RsaI | GTAC | 4 cut(s) | 145, 395, 1078, 1100 |
| RsaNI | GTAC | 4 cut(s) | 144, 394, 1077, 1099 |
| RseI | CAYNNNNRTG | 5 cut(s) | 630, 656, 1245, 1507, 1518 |
| SacII | CCGCGG | 1 cut(s) | 411 |
| SalI | GTCGAC | 1 cut(s) | 929 |
| SapI | GCTCTTC | 1 cut(s) | 437 |
| SaqAI | TTAA | 3 cut(s) | 47, 378, 1128 |
| SatI | GCNGC | 6 cut(s) | 367, 405, 408, 411, 856, 899 |
| Sau96I | GGNCC | 2 cut(s) | 268, 648 |
| SchI | GAGTC | 1 cut(s) | 160 |
| ScrFI | CCNGG | 6 cut(s) | 41, 282, 457, 487, 515, 1194 |
| SduI | GDGCHC | 9 cut(s) | 420, 612, 699, 774, 1165, 1191, 1201, 1207, 1227 |
| SfaNI | GCATC | 4 cut(s) | 162, 338, 1240, 1499 |
| SfoI | GGCGCC | 1 cut(s) | 286 |
| Sfr274I | CTCGAG | 1 cut(s) | 611 |
| Sfr303I | CCGCGG | 1 cut(s) | 411 |
| SgrBI | CCGCGG | 1 cut(s) | 411 |
| SinI | GGWCC | 2 cut(s) | 268, 648 |
| SlaI | CTCGAG | 1 cut(s) | 611 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 630, 656, 1245, 1507, 1518 |
| SmlI | CTYRAG | 2 cut(s) | 578, 611 |
| SmoI | CTYRAG | 2 cut(s) | 578, 611 |
| Sse9I | AATT | 6 cut(s) | 74, 99, 111, 123, 479, 803 |
| SspDI | GGCGCC | 1 cut(s) | 284 |
| SspMI | CTAG | 3 cut(s) | 179, 1133, 1166 |
| StyD4I | CCNGG | 6 cut(s) | 39, 280, 455, 485, 513, 1192 |
| StyI | CCWWGG | 1 cut(s) | 742 |
| TaaI | ACNGT | 6 cut(s) | 427, 721, 1000, 1043, 1231, 1520 |
| TaiI | ACGT | 3 cut(s) | 762, 1029, 1078 |
| TaqII | GACCGA | 1 cut(s) | 256 |
| TasI | AATT | 6 cut(s) | 74, 99, 111, 123, 479, 803 |
| TatI | WGTACW | 2 cut(s) | 143, 1098 |
| TauI | GCSGC | 4 cut(s) | 369, 407, 410, 413 |
| TfiI | GAWTC | 2 cut(s) | 452, 918 |
| Tru1I | TTAA | 3 cut(s) | 47, 378, 1128 |
| Tru9I | TTAA | 3 cut(s) | 47, 378, 1128 |
| TscAI | CASTG | 2 cut(s) | 724, 1234 |
| TseFI | GTSAC | 1 cut(s) | 1525 |
| TseI | GCWGC | 2 cut(s) | 855, 898 |
| Tsp45I | GTSAC | 1 cut(s) | 1525 |
| TspDTI | ATGAA | 3 cut(s) | 17, 770, 1196 |
| TspGWI | ACGGA | 3 cut(s) | 263, 330, 1235 |
| TspRI | CASTG | 2 cut(s) | 724, 1234 |
| VpaK11BI | GGWCC | 2 cut(s) | 268, 648 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 242 |
| XapI | RAATTY | 2 cut(s) | 479, 803 |
| XhoI | CTCGAG | 1 cut(s) | 611 |
| XmiI | GTMKAC | 1 cut(s) | 930 |
| XspI | CTAG | 3 cut(s) | 179, 1133, 1166 |