Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000467.1

Orthogroup ID

OG0001956

Physical Location & Seq

Genomic Coordinates Forward (+)

135890 .. 136492

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000467.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgattgagagtggtgtcattaagctcggtgagaagcaggctgacagcaaatgtgctctcgtgtacggtcaaatgaatgagccccctggtgcccgtgctcgtgttgggttgactggcctgactgtagcagaacatttccgtgatgctgaagggcaagacgtgctcctctttattgacaacattttccgatttacccaagctaactctgaggtgtctgctttgcttggtcgtatcccatctgccgtcggataccaacctactttagctactgatcttggaggtcttcaagagcgtatcacaaccaccaagaagggttccattacttctgtccaagctatttatgtgcctgctgatgacttgacagatcctgctcctgcaactacttttgctcacttggataccagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

135

Amino Acids

14.35

Weight (kDa)

4.87

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08670 AT5G08680 AT5G08690
fragaria_vesca	FvH4_4g26290 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960
malus_domestica	MD06G1223200.v1.1 MD13G1031500.v1.1 MD16G1033600.v1.1
prunus_persica	Prupe.1G320700_v2.0.a1 Prupe.5G228300_v2.0.a1
pyrus_communis	pycom06g19890 pycom13g02750 pycom16g02820
rosa_chinensis	RchiOBHm_Chr4g0433891 RchiOBHm_Chr7g0179061
rosa_laevigata	RLG00000005389 RLG00000006719
rosa_multiflora	Rmu_sc0000580.1_g000121 Rmu_sc0000888.1_g000014 Rmu_sc0026034.1_g000001 Rmu_ssc0000467.1_g000038
rosa_roxburghii	Rroxscaffold_3G00274430 Rroxscaffold_5G00375290
rosa_rugosa	Rorug04G0272100 Rorug06G0420600
rosa_samantha	Rh4AG326900 Rh4BG334400 Rh4CG350100 Rh4DG331100 Rh5AG180000 Rh5AG520200 Rh7AG020000 Rh7AG221100 Rh7BG019700 Rh7CG020900 Rh7DG020400 Rh7DG020500
rosa_wichuraiana	Rw2G024880 Rw4G028340 Rw6G005660 Rw7G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	5 cut(s)	25, 200, 266, 335, 405
AluI	AGCT	5 cut(s)	25, 200, 266, 335, 405
Alw21I	GWGCWC	3 cut(s)	58, 100, 165
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	2 cut(s)	59, 99
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	3 cut(s)	58, 100, 165
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	3 cut(s)	242, 242, 391
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	3 cut(s)	242, 242, 391
Bme1390I	CCNGG	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	91, 316
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	94
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	3 cut(s)	58, 100, 165
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	5 cut(s)	58, 84, 94, 100, 165
Bsp143I	GATC	2 cut(s)	271, 364
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	91, 316
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	271, 364
BssSI	CACGAG	2 cut(s)	59, 99
Bst2BI	CACGAG	2 cut(s)	59, 99
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	68, 124
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	39, 348
BstDEI	CTNAG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	274, 367
BstMBI	GATC	2 cut(s)	271, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	3 cut(s)	242, 242, 391
BsuRI	GGCC	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	39, 348
CaiI	CAGNNNCTG	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	8 cut(s)	25, 41, 82, 117, 200, 266, 335, 405
CviKI_1	RGCY	8 cut(s)	25, 41, 82, 117, 200, 266, 335, 405
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	273, 366
DpnII	GATC	2 cut(s)	271, 364
Eco24I	GRGCYC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	84
FaiI	YATR	1 cut(s)	342
FriOI	GRGCYC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	64, 111
Hpy188I	TCNGA	3 cut(s)	188, 208, 248
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	2 cut(s)	64, 111
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	143, 304
HpyCH4III	ACNGT	2 cut(s)	68, 124
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	271, 364
LmnI	GCTCC	2 cut(s)	168, 376
LpnPI	CCDG	8 cut(s)	23, 72, 99, 99, 131, 360, 381, 387
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	159
MalI	GATC	2 cut(s)	273, 366
MboI	GATC	2 cut(s)	271, 364
MboII	GAAGA	1 cut(s)	275
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	5 cut(s)	58, 84, 94, 100, 165
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	176, 202, 272
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	2 cut(s)	271, 364
NlaIV	GGNNCC	2 cut(s)	91, 316
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	91, 316
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	271, 364
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	5 cut(s)	58, 84, 94, 100, 165
SetI	ASST	9 cut(s)	27, 162, 202, 213, 259, 268, 283, 337, 407
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	68, 124
TaiI	ACGT	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.