Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026034.1

Orthogroup ID

OG0001956

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2733

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026034.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

gatgggactgaagggcttgttagaggacagcgcgtgctcaacaccggctctcccatcactgtgcctgttggtaggtctaccctgggtcgaatcatgaacgttattggagagcccattgatcataggggcgatatcaaaaccgatcactttctgcccattcatagagaagctccagcctttgttgagcaagctactgagcaagagatccttgttactggaattaaggttgttgaccttcttgctccataccaaagaggaggaaagattgggttgtttggtggtgctggtgtaggaaagactgtccttattatggaactcatcaacaatgttgcaaaagctcatggtggtttctccgtgtttgctggtgttggagaacgcactcgtgagggtaatgatttgtacagggaaatgattgagagtggtgtcattaagcttggtgaaaagcaggctgacagcaaatgtgctctcgtgtacggtcaaatgaatgagccccctggtgcccgtgctcgtgttgggttgactggcctgactgtagcagaacatttccgtgatgctgaagggcaagatgtgctcctgtttatcgacaacattttccgatttacccaagctaactctgaggtgtctgctttgcttggtcgtatcccatctgccgtcggataccaacctactttagctactgatcttggaggtcttcaagagcgtatcacaaccaccaagaagggttccattacttctgtccaagctatttatgtgcctgctgatgacttgacagatcctgctcctgcaactacttttgctcacttggatgccacaactgtgttgtctagacagatctctgagcttggtatctatcctgctgtcgatccccttgattctacatctcgtatgctctctccccatattttgggcgaggaacattacaacactgctcgtggagtgcagaaggttcttcagaactacaagaatttgcaagatatcattgctattttgggaatggatgagcttagtgaagatgataaattgactgttgcccgtgctcgtaaaattcaacgtttcttgagccagccgttccatgttgcagaagttttcaccggtgccccgggaaagtacgtagagttgaaagaaagcattaccagcttccagggagtgttggatggtaagtacgatgaccttccagaacaatcgttctacatggttggaggtattgaggaggtcattgctaaggctgagaagattgccaaggaaaatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

417

Amino Acids

45.14

Weight (kDa)

5.33

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08670 AT5G08680 AT5G08690
fragaria_vesca	FvH4_4g26290 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960
malus_domestica	MD06G1223200.v1.1 MD13G1031500.v1.1 MD16G1033600.v1.1
prunus_persica	Prupe.1G320700_v2.0.a1 Prupe.5G228300_v2.0.a1
pyrus_communis	pycom06g19890 pycom13g02750 pycom16g02820
rosa_chinensis	RchiOBHm_Chr4g0433891 RchiOBHm_Chr7g0179061
rosa_laevigata	RLG00000005389 RLG00000006719
rosa_multiflora	Rmu_sc0000580.1_g000121 Rmu_sc0000888.1_g000014 Rmu_sc0026034.1_g000001 Rmu_ssc0000467.1_g000038
rosa_roxburghii	Rroxscaffold_3G00274430 Rroxscaffold_5G00375290
rosa_rugosa	Rorug04G0272100 Rorug06G0420600
rosa_samantha	Rh4AG326900 Rh4BG334400 Rh4CG350100 Rh4DG331100 Rh5AG180000 Rh5AG520200 Rh7AG020000 Rh7AG221100 Rh7BG019700 Rh7CG020900 Rh7DG020400 Rh7DG020500
rosa_wichuraiana	Rw2G024880 Rw4G028340 Rw6G005660 Rw7G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	497, 1094
AccB7I	CCANNNNNTGG	1 cut(s)	904
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	33
AclI	AACGTT	2 cut(s)	99, 1051
AclWI	GGATC	3 cut(s)	199, 767, 857
AcsI	RAATTY	2 cut(s)	964, 1044
AcuI	CTGAAG	3 cut(s)	30, 576, 935
AfaI	GTAC	4 cut(s)	401, 473, 1109, 1163
AfiI	CCNNNNNNNGG	2 cut(s)	310, 904
AgeI	ACCGGT	1 cut(s)	1091
AgsI	TTSAA	3 cut(s)	695, 1049, 1120
AjnI	CCWGG	3 cut(s)	81, 493, 1140
AleI	CACNNNNGTG	1 cut(s)	815
Alw21I	GWGCWC	5 cut(s)	39, 466, 508, 573, 1039
AlwI	GGATC	3 cut(s)	199, 767, 857
AlwNI	CAGNNNCTG	1 cut(s)	776
Ama87I	CYCGRG	1 cut(s)	1099
AoxI	GGCC	1 cut(s)	523
ApoI	RAATTY	2 cut(s)	964, 1044
AsiGI	ACCGGT	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	33
AsuC2I	CCSGG	2 cut(s)	1100, 1101
AsuHPI	GGTGA	2 cut(s)	449, 1081
AvaI	CYCGRG	1 cut(s)	1099
BaeGI	GKGCMC	2 cut(s)	502, 1099
BanI	GGYRCC	2 cut(s)	497, 1094
BanII	GRGCYC	2 cut(s)	114, 492
BauI	CACGAG	4 cut(s)	381, 467, 507, 930
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	5 cut(s)	39, 466, 508, 573, 1039
BccI	CCATC	3 cut(s)	62, 652, 1148
BceAI	ACGGC	2 cut(s)	635, 1051
BciT130I	CCWGG	3 cut(s)	83, 495, 1142
BciVI	GTATCC	2 cut(s)	650, 650
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	1100, 1101
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	1 cut(s)	531
BfuI	GTATCC	2 cut(s)	650, 650
BglII	AGATCT	1 cut(s)	831
Bme1390I	CCNGG	5 cut(s)	83, 495, 1100, 1101, 1142
BmeT110I	CYCGRG	1 cut(s)	1099
BmiI	GGNNCC	3 cut(s)	499, 724, 1096
BmrFI	CCNGG	5 cut(s)	83, 495, 1100, 1101, 1142
BmsI	GCATC	2 cut(s)	541, 796
BpiI	GAAGAC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	1221
BpuEI	CTTGAG	1 cut(s)	1078
BpuMI	CCSGG	2 cut(s)	1100, 1101
BsaAI	YACGTR	1 cut(s)	1111
BsaJI	CCNNGG	7 cut(s)	81, 82, 493, 1098, 1099, 1141, 1239
BsaWI	WCCGGW	1 cut(s)	1091
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 904
Bse118I	RCCGGY	2 cut(s)	44, 1091
Bse1I	ACTGG	2 cut(s)	220, 526
Bse3DI	GCAATG	2 cut(s)	978, 1215
BseBI	CCWGG	3 cut(s)	83, 495, 1142
BseDI	CCNNGG	7 cut(s)	81, 82, 493, 1098, 1099, 1141, 1239
BseGI	GGATG	3 cut(s)	811, 1003, 1159
BseLI	CCNNNNNNNGG	2 cut(s)	310, 904
BseMI	GCAATG	2 cut(s)	978, 1215
BseMII	CTCAG	4 cut(s)	186, 606, 828, 1218
BseNI	ACTGG	2 cut(s)	220, 526
BseRI	GAGGAG	2 cut(s)	270, 1223
BseSI	GKGCMC	2 cut(s)	502, 1099
BsgI	GTGCAG	1 cut(s)	959
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	525
BshNI	GGYRCC	2 cut(s)	497, 1094
BshTI	ACCGGT	1 cut(s)	1091
BsiHKAI	GWGCWC	5 cut(s)	39, 466, 508, 573, 1039
BsiHKCI	CYCGRG	1 cut(s)	1099
BsiSI	CCGG	3 cut(s)	45, 1092, 1100
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	310, 904
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	525
BsoBI	CYCGRG	1 cut(s)	1099
Bsp1286I	GDGCHC	9 cut(s)	39, 114, 466, 492, 502, 508, 573, 1039, 1099
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	4 cut(s)	187, 607, 829, 1219
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	499, 724, 1096
BspPI	GGATC	3 cut(s)	199, 767, 857
BspT107I	GGYRCC	2 cut(s)	497, 1094
BsrDI	GCAATG	2 cut(s)	978, 1215
BsrFI	RCCGGY	2 cut(s)	44, 1091
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	220, 526
BssAI	RCCGGY	2 cut(s)	44, 1091
BssECI	CCNNGG	7 cut(s)	81, 82, 493, 1098, 1099, 1141, 1239
BssMI	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
BssSI	CACGAG	4 cut(s)	381, 467, 507, 930
BssT1I	CCWWGG	1 cut(s)	1239
Bst2BI	CACGAG	4 cut(s)	381, 467, 507, 930
Bst2UI	CCWGG	3 cut(s)	83, 495, 1142
Bst4CI	ACNGT	6 cut(s)	61, 301, 476, 532, 817, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	1111
BstC8I	GCNNGC	5 cut(s)	35, 189, 447, 756, 1064
BstDEI	CTNAG	6 cut(s)	195, 615, 837, 1004, 1221, 1227
BstF5I	GGATG	3 cut(s)	811, 1003, 1159
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	7 cut(s)	121, 145, 207, 682, 775, 834, 865
BstMBI	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	568, 1134
BstNI	CCWGG	3 cut(s)	83, 495, 1142
BstSCI	CCNGG	5 cut(s)	81, 493, 1098, 1099, 1140
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	2 cut(s)	502, 1099
BstSNI	TACGTA	1 cut(s)	1111
BstUI	CGCG	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	3 cut(s)	204, 772, 831
BstYI	RGATCY	3 cut(s)	204, 772, 831
BsuI	GTATCC	2 cut(s)	650, 650
BsuRI	GGCC	1 cut(s)	525
BtsCI	GGATG	3 cut(s)	811, 1003, 1159
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	2 cut(s)	57, 924
Cac8I	GCNNGC	5 cut(s)	35, 189, 447, 756, 1064
CaiI	CAGNNNCTG	1 cut(s)	776
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	2 cut(s)	44, 1091
Cfr9I	CCCGGG	1 cut(s)	1099
Csp6I	GTAC	4 cut(s)	400, 472, 1108, 1162
CspAI	ACCGGT	1 cut(s)	1091
CviAII	CATG	4 cut(s)	94, 341, 1073, 1192
CviQI	GTAC	4 cut(s)	400, 472, 1108, 1162
DdeI	CTNAG	6 cut(s)	195, 615, 837, 1004, 1221, 1227
DpnI	GATC	7 cut(s)	120, 144, 206, 681, 774, 833, 864
DpnII	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
Eco105I	TACGTA	1 cut(s)	1111
Eco130I	CCWWGG	1 cut(s)	1239
Eco24I	GRGCYC	2 cut(s)	114, 492
Eco32I	GATATC	2 cut(s)	133, 976
Eco57I	CTGAAG	3 cut(s)	30, 576, 935
Eco88I	CYCGRG	1 cut(s)	1099
EcoRII	CCWGG	3 cut(s)	81, 493, 1140
EcoRV	GATATC	2 cut(s)	133, 976
EcoT14I	CCWWGG	1 cut(s)	1239
EcoT38I	GRGCYC	2 cut(s)	114, 492
ErhI	CCWWGG	1 cut(s)	1239
FaeI	CATG	4 cut(s)	97, 344, 1076, 1195
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	4 cut(s)	93, 340, 1072, 1191
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	77
FokI	GGATG	3 cut(s)	818, 1010, 1166
FriOI	GRGCYC	2 cut(s)	114, 492
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	525
HapII	CCGG	3 cut(s)	45, 1092, 1100
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	97, 344, 1076, 1195
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	2 cut(s)	232, 519
HindII	GTYRAC	2 cut(s)	232, 519
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	2 cut(s)	90, 872
HpaII	CCGG	3 cut(s)	45, 1092, 1100
HphI	GGTGA	2 cut(s)	449, 1081
Hpy166II	GTNNAC	4 cut(s)	78, 232, 472, 519
Hpy188I	TCNGA	5 cut(s)	596, 616, 656, 838, 954
Hpy188III	TCNNGA	6 cut(s)	94, 383, 695, 825, 1057, 1175
Hpy8I	GTNNAC	4 cut(s)	78, 232, 472, 519
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	6 cut(s)	5, 245, 551, 712, 937, 1181
HpyCH4III	ACNGT	6 cut(s)	61, 301, 476, 532, 817, 1027
HpyCH4IV	ACGT	3 cut(s)	99, 1051, 1110
HpyCH4V	TGCA	5 cut(s)	332, 785, 940, 970, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	568, 1134
HpyF3I	CTNAG	6 cut(s)	195, 615, 837, 1004, 1221, 1227
HpySE526I	ACGT	3 cut(s)	99, 1051, 1110
Hsp92II	CATG	4 cut(s)	97, 344, 1076, 1195
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
LmnI	GCTCC	4 cut(s)	175, 247, 576, 784
LweI	GCATC	2 cut(s)	541, 796
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	3 cut(s)	99, 1051, 1110
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	7 cut(s)	120, 144, 206, 681, 774, 833, 864
MboI	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
MboII	GAAGA	4 cut(s)	683, 941, 1022, 1243
MflI	RGATCY	3 cut(s)	204, 772, 831
MhlI	GDGCHC	9 cut(s)	39, 114, 466, 492, 502, 508, 573, 1039, 1099
MluCI	AATT	4 cut(s)	219, 964, 1019, 1044
MmeI	TCCRAC	4 cut(s)	349, 634, 1131, 1177
MseI	TTAA	3 cut(s)	222, 429, 1252
MslI	CAYNNNNRTG	4 cut(s)	59, 546, 804, 815
MspI	CCGG	3 cut(s)	45, 1092, 1100
MspR9I	CCNGG	5 cut(s)	83, 495, 1100, 1101, 1142
MvaI	CCWGG	3 cut(s)	83, 495, 1142
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	568, 1134
NciI	CCSGG	2 cut(s)	1100, 1101
NdeII	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
NlaIII	CATG	4 cut(s)	97, 344, 1076, 1195
NlaIV	GGNNCC	3 cut(s)	499, 724, 1096
OliI	CACNNNNGTG	1 cut(s)	815
PagI	TCATGA	1 cut(s)	93
PasI	CCCWGGG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	90, 872
PflMI	CCANNNNNTGG	1 cut(s)	904
PinAI	ACCGGT	1 cut(s)	1091
Ppu21I	YACGTR	1 cut(s)	1111
Psp1406I	AACGTT	2 cut(s)	99, 1051
Psp6I	CCWGG	3 cut(s)	81, 493, 1140
PspGI	CCWGG	3 cut(s)	81, 493, 1140
PspN4I	GGNNCC	3 cut(s)	499, 724, 1096
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	3 cut(s)	204, 772, 831
RsaI	GTAC	4 cut(s)	401, 473, 1109, 1163
RsaNI	GTAC	4 cut(s)	400, 472, 1108, 1162
RseI	CAYNNNNRTG	4 cut(s)	59, 546, 804, 815
SaqAI	TTAA	3 cut(s)	222, 429, 1252
Sau3AI	GATC	7 cut(s)	118, 142, 204, 679, 772, 831, 862
ScrFI	CCNGG	5 cut(s)	83, 495, 1100, 1101, 1142
SduI	GDGCHC	9 cut(s)	39, 114, 466, 492, 502, 508, 573, 1039, 1099
SfaNI	GCATC	2 cut(s)	541, 796
SfcI	CTRYAG	1 cut(s)	531
SgrAI	CRCCGGYG	1 cut(s)	1091
SmaI	CCCGGG	1 cut(s)	1101
SmiMI	CAYNNNNRTG	4 cut(s)	59, 546, 804, 815
SmlI	CTYRAG	1 cut(s)	1057
SmoI	CTYRAG	1 cut(s)	1057
SnaBI	TACGTA	1 cut(s)	1111
Sse9I	AATT	4 cut(s)	219, 964, 1019, 1044
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	5 cut(s)	81, 493, 1098, 1099, 1140
StyI	CCWWGG	1 cut(s)	1239
TaaI	ACNGT	6 cut(s)	61, 301, 476, 532, 817, 1027
TaiI	ACGT	3 cut(s)	102, 1054, 1113
TaqI	TCGA	3 cut(s)	88, 582, 861
TasI	AATT	4 cut(s)	219, 964, 1019, 1044
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	90, 872
Tru1I	TTAA	3 cut(s)	222, 429, 1252
Tru9I	TTAA	3 cut(s)	222, 429, 1252
TscAI	CASTG	2 cut(s)	64, 931
TspDTI	ATGAA	3 cut(s)	110, 149, 497
TspGWI	ACGGA	2 cut(s)	343, 536
TspMI	CCCGGG	1 cut(s)	1099
TspRI	CASTG	2 cut(s)	64, 931
Van91I	CCANNNNNTGG	1 cut(s)	904
XapI	RAATTY	2 cut(s)	964, 1044
XbaI	TCTAGA	1 cut(s)	824
XmaI	CCCGGG	1 cut(s)	1099
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.