Rh7DG020400

Produces ATP from ADP in the presence of a proton gradient across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001956
Physical Location & Seq
Reverse (-)
1655372 .. 1659346
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG020400.1

Sequence Viewer

Length: 1086 bp
ATGAGGAGTGGGCATGTTCTGTTAGGTCCCTTCCCTTGTGCAATAAGGTATGCACTTGTTGTTGATCTTCTTGCTCCTTACCAAAGAGGAGGAAAGATTGGGCTCTTTGGTGGAGCTGGTGTTGGAAAGACCGTGCTTATTATGGAACTTATCAACAATGTTGCCAAAGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTGGGAGAACGTACGAGAGAGGGTAATGATTTATACCGAGAAATGATTGAAAGTGGTGTCATTAAGCTTGGAGAAAAGCAGAGTGATAGTAAGTGTGCTCTTGTATATGGTCAAATGAATGAACCTCCTGGTGCCCGTGCTCGTGTTGGGCTCACTGGCTTGACTGTGGCTGAGCATTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTGTTCATTGATAACATATTCCGCTTTACTCAAGCTAACTCAGAAGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCAACCTACGTTAGCTACTGATCTTGGAGGACTTCAAGAGCGTATTACTACAACCAAGAAGGGTTCTATTACGTCTGTTCAAGCTATTTACGTACCTGCTGATGACTTGACAGATCCGGCTCCTGCAACCACTTTTGCCCATCTTGATGCCACTACTGTGCTGTCACGACAAATATCTGAGCTTGGAATCTATCCTGCGGTTGACCCCTTGGATTCTACATCTCGCATGCTCTCGCCTCATATTCTAGGAGAAGAACACTACAACACTGCTCGTGGTGTTCAGAAAGTTCTTCAAAACTATAAGAATCTGCAAGATATTATTGCAATTTTGGGGATGGATGAGCTTAGTGAAGATGACAAATTGACTGTTGCTCGTGCTCGTAAAATTCAACGGTTCTTGAGCCAACCTTTCCATGTGGCAGAAGTGTTCACGGGAGCTCCCGGAAAATATGTGGAGTTGAAAGAGAGCATTACCAGTTTCCAGGGAGTTCTGGATGGGAAATATGATGATCTTCCTGAGCAATCGTTCTATATGGTTGGTGGAATTGAAGAAGTCATTGCTAAGGCAGAGAAGATTGCCAAGGAAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017076 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0034220 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:0098655 GO:0098660 GO:0098662 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

361

Amino Acids

39.1

Weight (kDa)

5.49

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 20 - 238 5.2e-67 ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_VA_C PF22919 245 - 319 2.3e-15 C-terminal domain of V and A type ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 329
AciI CCGC 2 cut(s) 427, 689
AclWI GGATC 1 cut(s) 599
AcsI RAATTY 1 cut(s) 876
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 2 cut(s) 211, 585
AgsI TTSAA 7 cut(s) 248, 527, 572, 785, 881, 952, 1040
AjnI CCWGG 2 cut(s) 325, 972
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 9 cut(s) 116, 170, 265, 440, 506, 575, 673, 835, 929
AluI AGCT 9 cut(s) 116, 170, 265, 440, 506, 575, 673, 835, 929
Alw21I GWGCWC 4 cut(s) 298, 340, 871, 931
AlwI GGATC 1 cut(s) 599
ApoI RAATTY 1 cut(s) 876
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 933
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 3 cut(s) 105, 351, 931
BauI CACGAG 3 cut(s) 339, 762, 864
Bbv12I GWGCWC 4 cut(s) 298, 340, 871, 931
BccI CCATC 4 cut(s) 484, 639, 820, 980
BciT130I CCWGG 2 cut(s) 327, 974
BciVI GTATCC 1 cut(s) 482
BcnI CCSGG 1 cut(s) 933
BfaI CTAG 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 595
BfuI GTATCC 1 cut(s) 482
BlpI GCTNAGC 1 cut(s) 369
Bme1390I CCNGG 3 cut(s) 327, 933, 974
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 3 cut(s) 28, 331, 612
BmrFI CCNGG 3 cut(s) 327, 933, 974
BmsI GCATC 2 cut(s) 373, 628
Bpu10I CCTNAGC 2 cut(s) 1008, 1053
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 420, 910
BpuMI CCSGG 1 cut(s) 933
BsaAI YACGTR 1 cut(s) 583
BsaJI CCNNGG 3 cut(s) 699, 973, 1071
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 913, 943
Bse1I ACTGG 2 cut(s) 358, 966
Bse3DI GCAATG 1 cut(s) 1047
BseBI CCWGG 2 cut(s) 327, 974
BseDI CCNNGG 3 cut(s) 699, 973, 1071
BseGI GGATG 3 cut(s) 831, 835, 991
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 4 cut(s) 360, 459, 660, 999
BseNI ACTGG 2 cut(s) 358, 966
BseRI GAGGAG 2 cut(s) 19, 102
BseSI GKGCMC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 4 cut(s) 298, 340, 871, 931
BsiSI CCGG 2 cut(s) 608, 933
BsiWI CGTACG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 12
Bsp1286I GDGCHC 7 cut(s) 105, 298, 334, 340, 351, 871, 931
Bsp143I GATC 4 cut(s) 64, 511, 604, 1000
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 2 cut(s) 427, 689
BspCNI CTCAG 4 cut(s) 361, 458, 661, 1000
BspLI GGNNCC 3 cut(s) 28, 331, 612
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 1047
BsrI ACTGG 2 cut(s) 358, 966
BssECI CCNNGG 3 cut(s) 699, 973, 1071
BssMI GATC 4 cut(s) 64, 511, 604, 1000
BssSI CACGAG 3 cut(s) 339, 762, 864
BssT1I CCWWGG 2 cut(s) 699, 1071
Bst2BI CACGAG 3 cut(s) 339, 762, 864
Bst2UI CCWGG 2 cut(s) 327, 974
Bst4CI ACNGT 5 cut(s) 133, 364, 649, 859, 885
BstAPI GCANNNNNTGC 1 cut(s) 400
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 719
BstDEI CTNAG 6 cut(s) 369, 445, 669, 836, 1008, 1053
BstEII GGTNACC 1 cut(s) 488
BstF5I GGATG 3 cut(s) 831, 835, 991
BstKTI GATC 4 cut(s) 67, 514, 607, 1003
BstMBI GATC 4 cut(s) 64, 511, 604, 1000
BstMWI GCNNNNNNNGC 1 cut(s) 400
BstNI CCWGG 2 cut(s) 327, 974
BstNSI RCATGY 2 cut(s) 17, 721
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 3 cut(s) 325, 931, 972
BstSLI GKGCMC 1 cut(s) 334
BstSNI TACGTA 1 cut(s) 583
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuI GTATCC 1 cut(s) 482
BtsCI GGATG 3 cut(s) 831, 835, 991
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 351, 756
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 210, 584
CviAII CATG 4 cut(s) 14, 173, 718, 905
CviQI GTAC 2 cut(s) 210, 584
DdeI CTNAG 6 cut(s) 369, 445, 669, 836, 1008, 1053
DpnI GATC 4 cut(s) 66, 513, 606, 1002
DpnII GATC 4 cut(s) 64, 511, 604, 1000
Ecl136II GAGCTC 1 cut(s) 929
Eco105I TACGTA 1 cut(s) 583
Eco130I CCWWGG 2 cut(s) 699, 1071
Eco24I GRGCYC 3 cut(s) 105, 351, 931
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 929
Eco57I CTGAAG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 929
EcoO109I RGGNCCY 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 325, 972
EcoT14I CCWWGG 2 cut(s) 699, 1071
EcoT38I GRGCYC 3 cut(s) 105, 351, 931
ErhI CCWWGG 2 cut(s) 699, 1071
FaeI CATG 4 cut(s) 17, 176, 721, 908
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 12
FatI CATG 4 cut(s) 13, 172, 717, 904
FokI GGATG 3 cut(s) 838, 842, 998
FriOI GRGCYC 3 cut(s) 105, 351, 931
FspBI CTAG 1 cut(s) 737
HapII CCGG 2 cut(s) 608, 933
Hin1II CATG 4 cut(s) 17, 176, 721, 908
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 3 cut(s) 678, 704, 796
HpaII CCGG 2 cut(s) 608, 933
Hpy166II GTNNAC 2 cut(s) 694, 921
Hpy188I TCNGA 3 cut(s) 448, 670, 774
Hpy188III TCNNGA 6 cut(s) 527, 635, 657, 889, 983, 1007
Hpy8I GTNNAC 2 cut(s) 694, 921
HpyAV CCTTC 3 cut(s) 40, 383, 544
HpyCH4III ACNGT 5 cut(s) 133, 364, 649, 859, 885
HpyCH4IV ACGT 4 cut(s) 208, 500, 563, 582
HpyCH4V TGCA 5 cut(s) 41, 53, 617, 802, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 400
HpyF3I CTNAG 6 cut(s) 369, 445, 669, 836, 1008, 1053
HpySE526I ACGT 4 cut(s) 208, 500, 563, 582
Hsp92II CATG 4 cut(s) 17, 176, 721, 908
Kzo9I GATC 4 cut(s) 64, 511, 604, 1000
LmnI GCTCC 5 cut(s) 79, 113, 616, 926, 934
LweI GCATC 2 cut(s) 373, 628
MaeI CTAG 1 cut(s) 737
MaeII ACGT 4 cut(s) 208, 500, 563, 582
MaeIII GTNAC 2 cut(s) 488, 654
MalI GATC 4 cut(s) 66, 513, 606, 1002
MboI GATC 4 cut(s) 64, 511, 604, 1000
MboII GAAGA 7 cut(s) 59, 755, 773, 854, 995, 1052, 1075
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 7 cut(s) 105, 298, 334, 340, 351, 871, 931
MluCI AATT 4 cut(s) 816, 851, 876, 1035
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 6 cut(s) 80, 83, 211, 333, 512, 738
MseI TTAA 2 cut(s) 261, 1084
MslI CAYNNNNRTG 3 cut(s) 378, 636, 647
MspI CCGG 2 cut(s) 608, 933
MspR9I CCNGG 3 cut(s) 327, 933, 974
MvaI CCWGG 2 cut(s) 327, 974
MwoI GCNNNNNNNGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 933
NdeII GATC 4 cut(s) 64, 511, 604, 1000
NlaIII CATG 4 cut(s) 17, 176, 721, 908
NlaIV GGNNCC 3 cut(s) 28, 331, 612
NmuCI GTSAC 1 cut(s) 654
NspI RCATGY 2 cut(s) 17, 721
OliI CACNNNNGTG 1 cut(s) 647
PaeI GCATGC 1 cut(s) 721
PfeI GAWTC 3 cut(s) 678, 704, 796
Pfl23II CGTACG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 931
Ppu21I YACGTR 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 931
Psp5II RGGWCCY 1 cut(s) 26
Psp6I CCWGG 2 cut(s) 325, 972
PspEI GGTNACC 1 cut(s) 488
PspGI CCWGG 2 cut(s) 325, 972
PspLI CGTACG 1 cut(s) 209
PspN4I GGNNCC 3 cut(s) 28, 331, 612
PspPI GGNCC 1 cut(s) 26
PspPPI RGGWCCY 1 cut(s) 26
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 2 cut(s) 211, 585
RsaNI GTAC 2 cut(s) 210, 584
RseI CAYNNNNRTG 3 cut(s) 378, 636, 647
SacI GAGCTC 1 cut(s) 931
SaqAI TTAA 2 cut(s) 261, 1084
Sau3AI GATC 4 cut(s) 64, 511, 604, 1000
Sau96I GGNCC 1 cut(s) 26
ScrFI CCNGG 3 cut(s) 327, 933, 974
SduI GDGCHC 7 cut(s) 105, 298, 334, 340, 351, 871, 931
SfaNI GCATC 2 cut(s) 373, 628
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 3 cut(s) 378, 636, 647
SmlI CTYRAG 2 cut(s) 435, 889
SmoI CTYRAG 2 cut(s) 435, 889
SnaBI TACGTA 1 cut(s) 583
SphI GCATGC 1 cut(s) 721
Sse9I AATT 4 cut(s) 816, 851, 876, 1035
SsiI CCGC 2 cut(s) 427, 689
SspMI CTAG 1 cut(s) 737
SstI GAGCTC 1 cut(s) 931
StyD4I CCNGG 3 cut(s) 325, 931, 972
StyI CCWWGG 2 cut(s) 699, 1071
TaaI ACNGT 5 cut(s) 133, 364, 649, 859, 885
TaiI ACGT 4 cut(s) 211, 503, 566, 585
TasI AATT 4 cut(s) 816, 851, 876, 1035
TfiI GAWTC 3 cut(s) 678, 704, 796
Tru1I TTAA 2 cut(s) 261, 1084
Tru9I TTAA 2 cut(s) 261, 1084
TscAI CASTG 2 cut(s) 358, 763
TseFI GTSAC 1 cut(s) 654
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 3 cut(s) 329, 333, 400
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 2 cut(s) 358, 763
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 876
XceI RCATGY 2 cut(s) 17, 721
XspI CTAG 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.