Rorug04G0272100

Produces ATP from ADP in the presence of a proton gradient across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001956
Physical Location & Seq
Reverse (-)
44462502 .. 44470817
8316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0272100.1

Sequence Viewer

Length: 900 bp
ATGGTTCCAGAATTAGAGAAACCTCGGATTACCGAGATACATGTTCGGATGGATTGTAATGGATGTGTACAGAAGATTAAGAAAGCACTACATGGCATCAACGGTATATATGATCTCTACATTGACTTCCCTCAGCAAAAGTTAACAATAATAGGGTGGGCGGATCCAGAGAAGATAGTAAAAGCCATTAAAAAGACGAGGAAGATTGCCACCATATGTTCCCATATAGAACAACCAACAGAGCCTGCTTCTCCTCCAGCAGAACAACCCCCCGAAGGTGCCGCAGCACCACCTCCCGATGCAGCAAACCCTCCTCCAACAGAATCACCTCCACCAGCCGAACCAGCTCCACCTCCTGAAGCTGCCCCACCAGCCGAGCCACCAAAGGATCCGCCACCACCGGAACATCCACAACCAGAGGCACTACCAACACCTGTGGCTGCTGAGACCAATCTAGGCCAACAACATCCGGTGTACCACCACAGGCCAAGAGAAGTTGGGGAAGTTCATACCATATACCACCACCCAGCTGATTATGGCTACAGATACGGCTACCCCGGCTACTATAATAGATACCATAATAGTCAAGGACCTCCACCGGAACCAACTCCTCCCCCTGCCCCGGCTCCAGCTCCGGCTCCGGCTCCAGCTCAAGTTCCAGTCCATACACCACCGGTCTATGTGACACATAGCTACAACACATACAGGCCATCACCTTATGTCACTGAATATGAGTATGTTCAGCCACCCCCACCACAACAGACGCATTACAGTAGGGTCAGCCAATACCACCACTACAATCAGGATCAACCGTATCACAATATCAGCAATGGAAATGGAAATGGCAACATCACGTCGATTTTTAGCGACGAAAATCCGAATGCGTGTGCTGTAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

299

Amino Acids

32.96

Weight (kDa)

5.9

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 15 - 66 1.8e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 3 cut(s) 161, 282, 392
AclWI GGATC 5 cut(s) 158, 171, 383, 396, 813
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 69, 476
AfiI CCNNNNNNNGG 2 cut(s) 275, 622
AflIII ACRYGT 1 cut(s) 40
AgeI ACCGGT 1 cut(s) 673
AjiI CACGTC 1 cut(s) 855
AluBI AGCT 6 cut(s) 347, 362, 530, 632, 650, 693
AluI AGCT 6 cut(s) 347, 362, 530, 632, 650, 693
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 5 cut(s) 158, 171, 383, 396, 813
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 3 cut(s) 457, 485, 707
ApeKI GCWGC 4 cut(s) 284, 302, 362, 440
AsiGI ACCGGT 1 cut(s) 673
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 2 cut(s) 558, 623
AsuHPI GGTGA 2 cut(s) 318, 705
AvaII GGWCC 1 cut(s) 590
BamHI GGATCC 2 cut(s) 163, 388
BanI GGYRCC 1 cut(s) 278
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 296, 314, 349, 427
BccI CCATC 2 cut(s) 43, 718
BceAI ACGGC 1 cut(s) 565
BcnI CCSGG 2 cut(s) 558, 623
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 541
BisI GCNGC 5 cut(s) 282, 285, 303, 363, 441
BlsI GCNGC 5 cut(s) 283, 286, 304, 364, 442
Bme1390I CCNGG 2 cut(s) 558, 623
Bme18I GGWCC 1 cut(s) 590
BmgBI CACGTC 1 cut(s) 855
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 8 cut(s) 6, 165, 280, 390, 603, 627, 639, 645
BmrFI CCNGG 2 cut(s) 558, 623
BmsI GCATC 2 cut(s) 105, 289
BpmI CTGGAG 3 cut(s) 240, 612, 630
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 636
BpuMI CCSGG 2 cut(s) 558, 623
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 3 cut(s) 23, 556, 621
BsaWI WCCGGW 4 cut(s) 400, 469, 598, 673
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 622
Bse118I RCCGGY 1 cut(s) 673
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 835
BseDI CCNNGG 3 cut(s) 23, 556, 621
BseGI GGATG 4 cut(s) 54, 68, 406, 466
BseLI CCNNNNNNNGG 2 cut(s) 275, 622
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 2 cut(s) 146, 435
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 3 cut(s) 243, 303, 600
BseXI GCAGC 4 cut(s) 296, 314, 349, 427
BseYI CCCAGC 1 cut(s) 526
BshFI GGCC 3 cut(s) 459, 487, 709
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 673
BsiSI CCGG 8 cut(s) 401, 470, 558, 599, 623, 635, 641, 674
BslI CCNNNNNNNGG 2 cut(s) 275, 622
BsmAI GTCTC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 3 cut(s) 459, 487, 709
Bso31I GGTCTC 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 67
Bsp143I GATC 4 cut(s) 112, 163, 388, 805
BspACI CCGC 3 cut(s) 161, 282, 392
BspANI GGCC 3 cut(s) 459, 487, 709
BspCNI CTCAG 2 cut(s) 145, 436
BspLI GGNNCC 8 cut(s) 6, 165, 280, 390, 603, 627, 639, 645
BspPI GGATC 5 cut(s) 158, 171, 383, 396, 813
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 835
BsrFI RCCGGY 1 cut(s) 673
BsrGI TGTACA 1 cut(s) 67
BsrI ACTGG 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 673
BssECI CCNNGG 3 cut(s) 23, 556, 621
BssMI GATC 4 cut(s) 112, 163, 388, 805
Bst4CI ACNGT 3 cut(s) 104, 773, 813
BstAUI TGTACA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 132, 444
BstF5I GGATG 4 cut(s) 54, 68, 406, 466
BstKTI GATC 4 cut(s) 115, 166, 391, 808
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 4 cut(s) 112, 163, 388, 805
BstMWI GCNNNNNNNGC 3 cut(s) 344, 371, 558
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 556, 621
BstSFI CTRYAG 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 296, 314, 349, 427
BstX2I RGATCY 2 cut(s) 163, 388
BstYI RGATCY 2 cut(s) 163, 388
BsuRI GGCC 3 cut(s) 459, 487, 709
BtrI CACGTC 1 cut(s) 855
BtsCI GGATG 4 cut(s) 54, 68, 406, 466
BtsIMutI CAGTG 1 cut(s) 723
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 673
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 1 cut(s) 772
Csp6I GTAC 2 cut(s) 68, 475
CspAI ACCGGT 1 cut(s) 673
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 2 cut(s) 41, 92
CviQI GTAC 2 cut(s) 68, 475
DdeI CTNAG 2 cut(s) 132, 444
DpnI GATC 4 cut(s) 114, 165, 390, 807
DpnII GATC 4 cut(s) 112, 163, 388, 805
EciI GGCGGA 2 cut(s) 176, 381
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 590
FaeI CATG 2 cut(s) 44, 95
FatI CATG 2 cut(s) 40, 91
FauNDI CATATG 1 cut(s) 215
Fnu4HI GCNGC 5 cut(s) 282, 285, 303, 363, 441
FokI GGATG 4 cut(s) 61, 75, 393, 453
Fsp4HI GCNGC 5 cut(s) 282, 285, 303, 363, 441
FspBI CTAG 1 cut(s) 455
GluI GCNGC 5 cut(s) 282, 285, 303, 363, 441
GsaI CCCAGC 1 cut(s) 530
GsuI CTGGAG 3 cut(s) 240, 612, 630
HaeIII GGCC 3 cut(s) 459, 487, 709
HapII CCGG 8 cut(s) 401, 470, 558, 599, 623, 635, 641, 674
HgaI GACGC 1 cut(s) 772
Hin1II CATG 2 cut(s) 44, 95
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 323
HpaI GTTAAC 1 cut(s) 144
HpaII CCGG 8 cut(s) 401, 470, 558, 599, 623, 635, 641, 674
HphI GGTGA 2 cut(s) 318, 705
Hpy166II GTNNAC 3 cut(s) 68, 144, 475
Hpy188I TCNGA 3 cut(s) 27, 48, 879
Hpy188III TCNNGA 5 cut(s) 8, 167, 296, 356, 803
Hpy8I GTNNAC 3 cut(s) 68, 144, 475
Hpy99I CGWCG 2 cut(s) 859, 872
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 3 cut(s) 104, 773, 813
HpyCH4IV ACGT 1 cut(s) 854
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 371, 558
HpyF3I CTNAG 2 cut(s) 132, 444
HpySE526I ACGT 1 cut(s) 854
Hsp92II CATG 2 cut(s) 44, 95
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 112, 163, 388, 805
LmnI GCTCC 5 cut(s) 352, 631, 637, 643, 649
Lsp1109I GCAGC 4 cut(s) 296, 314, 349, 427
LweI GCATC 2 cut(s) 105, 289
MaeI CTAG 1 cut(s) 455
MaeII ACGT 1 cut(s) 854
MaeIII GTNAC 2 cut(s) 682, 721
MalI GATC 4 cut(s) 114, 165, 390, 807
MboI GATC 4 cut(s) 112, 163, 388, 805
MboII GAAGA 3 cut(s) 85, 184, 214
MflI RGATCY 2 cut(s) 163, 388
MluCI AATT 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 341
MseI TTAA 3 cut(s) 78, 143, 189
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 8 cut(s) 401, 470, 558, 599, 623, 635, 641, 674
MspR9I CCNGG 2 cut(s) 558, 623
Mva1269I GAATGC 1 cut(s) 886
MwoI GCNNNNNNNGC 3 cut(s) 344, 371, 558
NciI CCSGG 2 cut(s) 558, 623
NdeI CATATG 1 cut(s) 215
NdeII GATC 4 cut(s) 112, 163, 388, 805
NlaIII CATG 2 cut(s) 44, 95
NlaIV GGNNCC 8 cut(s) 6, 165, 280, 390, 603, 627, 639, 645
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 682, 721
NspI RCATGY 1 cut(s) 44
PciI ACATGT 1 cut(s) 40
PctI GAATGC 1 cut(s) 886
PfeI GAWTC 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 673
PkrI GCNGC 5 cut(s) 283, 286, 304, 364, 442
PpuMI RGGWCCY 1 cut(s) 590
PscI ACATGT 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 526
PspN4I GGNNCC 8 cut(s) 6, 165, 280, 390, 603, 627, 639, 645
PspPI GGNCC 1 cut(s) 590
PspPPI RGGWCCY 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 2 cut(s) 163, 388
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 2 cut(s) 69, 476
RsaNI GTAC 2 cut(s) 68, 475
SaqAI TTAA 3 cut(s) 78, 143, 189
SatI GCNGC 5 cut(s) 282, 285, 303, 363, 441
Sau3AI GATC 4 cut(s) 112, 163, 388, 805
Sau96I GGNCC 1 cut(s) 590
ScrFI CCNGG 2 cut(s) 558, 623
SfaNI GCATC 2 cut(s) 105, 289
SfcI CTRYAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
Sse9I AATT 1 cut(s) 11
SsiI CCGC 3 cut(s) 161, 282, 392
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 556, 621
TaaI ACNGT 3 cut(s) 104, 773, 813
TaiI ACGT 1 cut(s) 857
TaqI TCGA 1 cut(s) 857
TasI AATT 1 cut(s) 11
TatI WGTACW 1 cut(s) 67
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 78, 143, 189
Tru9I TTAA 3 cut(s) 78, 143, 189
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 2 cut(s) 682, 721
TseI GCWGC 4 cut(s) 284, 302, 362, 440
Tsp45I GTSAC 2 cut(s) 682, 721
TspDTI ATGAA 1 cut(s) 497
TspRI CASTG 1 cut(s) 730
VpaK11BI GGWCC 1 cut(s) 590
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.