Rw2G024880

Produces ATP from ADP in the presence of a proton gradient across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001956
Physical Location & Seq
Reverse (-)
37020851 .. 37021453
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024880.1

Sequence Viewer

Length: 408 bp
ATGATTGAGAGTGGTGTCATTAAGCTCGGTGAGAAGCAGGCTGACAGCAAATGTGCTCTCGTGTACGGTCAAATGAATGAGCCCCCTGGTGCCCGTGCTCGTGTTGGGTTGACTGGCCTGACTGTAGCAGAACATTTCCGTGATGCTGAAGGGCAAGACGTGCTCCTCTTTATTGACAACATTTTCCGATTTACCCAAGCTAACTCTGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGATACCAACCTACTTTAGCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACCAAGAAGGGTTCCATTACTTCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCAACTACTTTTGCTCACTTGGATACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

135

Amino Acids

14.35

Weight (kDa)

4.87

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 9 - 134 7.3e-39 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AclWI GGATC 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 1 cut(s) 287
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 5 cut(s) 25, 200, 266, 335, 405
AluI AGCT 5 cut(s) 25, 200, 266, 335, 405
Alw21I GWGCWC 3 cut(s) 58, 100, 165
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 84
BauI CACGAG 2 cut(s) 59, 99
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 3 cut(s) 58, 100, 165
BccI CCATC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 87
BciVI GTATCC 3 cut(s) 242, 242, 391
BfmI CTRYAG 1 cut(s) 123
BfuI GTATCC 3 cut(s) 242, 242, 391
Bme1390I CCNGG 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 91, 316
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 94
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 89
BsiHKAI GWGCWC 3 cut(s) 58, 100, 165
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 5 cut(s) 58, 84, 94, 100, 165
Bsp143I GATC 2 cut(s) 271, 364
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 91, 316
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 271, 364
BssSI CACGAG 2 cut(s) 59, 99
Bst2BI CACGAG 2 cut(s) 59, 99
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 68, 124
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 39, 348
BstDEI CTNAG 1 cut(s) 207
BstKTI GATC 2 cut(s) 274, 367
BstMBI GATC 2 cut(s) 271, 364
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 3 cut(s) 242, 242, 391
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 39, 348
CaiI CAGNNNCTG 1 cut(s) 368
Csp6I GTAC 1 cut(s) 64
CviJI RGCY 8 cut(s) 25, 41, 82, 117, 200, 266, 335, 405
CviKI_1 RGCY 8 cut(s) 25, 41, 82, 117, 200, 266, 335, 405
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 273, 366
DpnII GATC 2 cut(s) 271, 364
Eco24I GRGCYC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 84
FaiI YATR 1 cut(s) 342
FriOI GRGCYC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 64, 111
Hpy188I TCNGA 3 cut(s) 188, 208, 248
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 2 cut(s) 64, 111
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 143, 304
HpyCH4III ACNGT 2 cut(s) 68, 124
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 159
Kzo9I GATC 2 cut(s) 271, 364
LmnI GCTCC 2 cut(s) 168, 376
LpnPI CCDG 8 cut(s) 23, 72, 99, 99, 131, 360, 381, 387
LweI GCATC 1 cut(s) 133
MaeII ACGT 1 cut(s) 159
MalI GATC 2 cut(s) 273, 366
MboI GATC 2 cut(s) 271, 364
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 5 cut(s) 58, 84, 94, 100, 165
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 3 cut(s) 176, 202, 272
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 2 cut(s) 271, 364
NlaIV GGNNCC 2 cut(s) 91, 316
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 91, 316
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 2 cut(s) 271, 364
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 5 cut(s) 58, 84, 94, 100, 165
SetI ASST 9 cut(s) 27, 162, 202, 213, 259, 268, 283, 337, 407
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 68, 124
TaiI ACGT 1 cut(s) 162
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.