Rh5AG180000

Produces ATP from ADP in the presence of a proton gradient across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001956
Physical Location & Seq
Reverse (-)
20299640 .. 20305094
5455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG180000.1

Sequence Viewer

Length: 474 bp
ATGATGATTGATGGCTTCTATGGTGGTTTGTTACCACATGAGAGGAGGAGGGTTGATGTTGCTGCACAAGGTTCACTTCATAGTCATGGTCAAACTGAGGCATGGGATATACTTGAGCACTTGGGTCAACAATTGAGGCAATGGGATGATCATGACTCTAGGAGAGAAACATTGAGGAAAGATCCATATTATGACACCAAGAGCACTCATGAGACACGGGTGGTTTCTCCGTGTTTGCTGGTGTTGGAGAACGCACTCGTGAGGGCTAACTTTGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGATACCAACCTACTTTAGCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACCAAGAAGGGTTCCATTACTTCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCAACTACTTTTGCTCACTTGGATACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017076 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0034220 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:0098655 GO:0098660 GO:0098662 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

157

Amino Acids

17.41

Weight (kDa)

5.56

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 87 - 156 6.1e-18 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 176, 425
AgsI TTSAA 1 cut(s) 353
AluBI AGCT 3 cut(s) 332, 401, 471
AluI AGCT 3 cut(s) 332, 401, 471
Alw21I GWGCWC 2 cut(s) 120, 206
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 176, 425
AlwNI CAGNNNCTG 1 cut(s) 434
ApeKI GCWGC 1 cut(s) 62
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 120, 206
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 5, 310
BceAI ACGGC 1 cut(s) 293
BciVI GTATCC 3 cut(s) 308, 308, 457
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 159
BfuI GTATCC 3 cut(s) 308, 308, 457
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 146
BseGI GGATG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 2 cut(s) 58, 61
BseXI GCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 120, 206
BsmAI GTCTC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 120, 206
Bsp143I GATC 4 cut(s) 148, 181, 337, 430
BspCNI CTCAG 1 cut(s) 88
BspHI TCATGA 2 cut(s) 151, 208
BspLI GGNNCC 1 cut(s) 382
BspPI GGATC 2 cut(s) 176, 425
BsrDI GCAATG 1 cut(s) 146
BssMI GATC 4 cut(s) 148, 181, 337, 430
BssSI CACGAG 1 cut(s) 257
Bst2BI CACGAG 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 4 cut(s) 151, 184, 340, 433
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 4 cut(s) 148, 181, 337, 430
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 2 cut(s) 181, 430
BstYI RGATCY 2 cut(s) 181, 430
BsuI GTATCC 3 cut(s) 308, 308, 457
BtsCI GGATG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 414
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 2 cut(s) 151, 208
CviAII CATG 5 cut(s) 38, 86, 102, 152, 209
CviJI RGCY 5 cut(s) 15, 266, 332, 401, 471
CviKI_1 RGCY 5 cut(s) 15, 266, 332, 401, 471
DdeI CTNAG 1 cut(s) 96
DpnI GATC 4 cut(s) 150, 183, 339, 432
DpnII GATC 4 cut(s) 148, 181, 337, 430
FaeI CATG 5 cut(s) 41, 89, 105, 155, 212
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 5 cut(s) 37, 85, 101, 151, 208
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 63
Hin1II CATG 5 cut(s) 41, 89, 105, 155, 212
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HinfI GANTC 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 74, 128
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 4 cut(s) 152, 209, 259, 353
Hpy8I GTNNAC 2 cut(s) 74, 128
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 370
HpyCH4V TGCA 2 cut(s) 65, 443
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 5 cut(s) 41, 89, 105, 155, 212
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 4 cut(s) 148, 181, 337, 430
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 4 cut(s) 224, 426, 447, 453
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 30
MalI GATC 4 cut(s) 150, 183, 339, 432
MboI GATC 4 cut(s) 148, 181, 337, 430
MboII GAAGA 1 cut(s) 341
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 2 cut(s) 181, 430
MhlI GDGCHC 2 cut(s) 120, 206
MluCI AATT 1 cut(s) 131
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 225, 292
MnlI CCTC 9 cut(s) 36, 39, 42, 91, 129, 168, 255, 268, 338
MslI CAYNNNNRTG 1 cut(s) 84
MunI CAATTG 1 cut(s) 131
NdeII GATC 4 cut(s) 148, 181, 337, 430
NlaIII CATG 5 cut(s) 41, 89, 105, 155, 212
NlaIV GGNNCC 1 cut(s) 382
PagI TCATGA 2 cut(s) 151, 208
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 2 cut(s) 181, 430
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 148, 181, 337, 430
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 2 cut(s) 120, 206
SetI ASST 7 cut(s) 73, 279, 325, 334, 349, 403, 473
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 1 cut(s) 131
SspMI CTAG 1 cut(s) 159
TasI AATT 1 cut(s) 131
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 219
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.