Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001956

Physical Location & Seq

Genomic Coordinates Reverse (-)

88962026 .. 88963043

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG520200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATTCACACTAAACCTATCTTTGTTGATCAGGTGGTTTCTCCGTGTTTGCTGGTGTTGGAGAACGCACTCGTGAGGGCTAACTCTGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGATACCAACCTACTTTAGCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACCAAGAAGGGTTCCATTACTTCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCAACTACTTTTGCTCACTTGGATACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017076 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0034220 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:0098655 GO:0098660 GO:0098662 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_ab ATP-synt_ab_N Synthase_beta

Protein Analysis

95

Amino Acids

10.03

Weight (kDa)

5.03

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	24 - 94	3.3e-19	ATP synthase alpha/beta family, nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08670 AT5G08680 AT5G08690
fragaria_vesca	FvH4_4g26290 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960 FvH4_5g16960
malus_domestica	MD06G1223200.v1.1 MD13G1031500.v1.1 MD16G1033600.v1.1
prunus_persica	Prupe.1G320700_v2.0.a1 Prupe.5G228300_v2.0.a1
pyrus_communis	pycom06g19890 pycom13g02750 pycom16g02820
rosa_chinensis	RchiOBHm_Chr4g0433891 RchiOBHm_Chr7g0179061
rosa_laevigata	RLG00000005389 RLG00000006719
rosa_multiflora	Rmu_sc0000580.1_g000121 Rmu_sc0000888.1_g000014 Rmu_sc0026034.1_g000001 Rmu_ssc0000467.1_g000038
rosa_roxburghii	Rroxscaffold_3G00274430 Rroxscaffold_5G00375290
rosa_rugosa	Rorug04G0272100 Rorug06G0420600
rosa_samantha	Rh4AG326900 Rh4BG334400 Rh4CG350100 Rh4DG331100 Rh5AG180000 Rh5AG520200 Rh7AG020000 Rh7AG221100 Rh7BG019700 Rh7CG020900 Rh7DG020400 Rh7DG020500
rosa_wichuraiana	Rw2G024880 Rw4G028340 Rw6G005660 Rw7G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	3 cut(s)	146, 215, 285
AluI	AGCT	3 cut(s)	146, 215, 285
AlwI	GGATC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	248
BauI	CACGAG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	155
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	107
BciVI	GTATCC	3 cut(s)	122, 122, 271
BclI	TGATCA	1 cut(s)	28
BfuI	GTATCC	3 cut(s)	122, 122, 271
BmiI	GGNNCC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	28, 151, 244
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	239
BssMI	GATC	3 cut(s)	28, 151, 244
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	31, 154, 247
BstMBI	GATC	3 cut(s)	28, 151, 244
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	3 cut(s)	122, 122, 271
Cac8I	GCNNGC	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	248
CviJI	RGCY	4 cut(s)	80, 146, 215, 285
CviKI_1	RGCY	4 cut(s)	80, 146, 215, 285
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	30, 153, 246
DpnII	GATC	3 cut(s)	28, 151, 244
FaiI	YATR	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	28
HinfI	GANTC	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	88, 128
Hpy188III	TCNNGA	2 cut(s)	73, 167
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	28, 151, 244
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	5 cut(s)	17, 38, 240, 261, 267
MalI	GATC	3 cut(s)	30, 153, 246
MboI	GATC	3 cut(s)	28, 151, 244
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	39, 106
MnlI	CCTC	3 cut(s)	69, 82, 152
NdeII	GATC	3 cut(s)	28, 151, 244
NlaIV	GGNNCC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	244
Sau3AI	GATC	3 cut(s)	28, 151, 244
SetI	ASST	8 cut(s)	19, 36, 93, 139, 148, 163, 217, 287
TfiI	GAWTC	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.