Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006214

Physical Location & Seq

Genomic Coordinates Forward (+)

3419097 .. 3421133

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGTACTCATGATGGCAACACTGAGGGTAGTTCTTTGGATCCCCAAATGGATGGTCCTTTTGTTGAATCCAATCAGAATGCCGCTAAAGAAGATCCTCTTATTTATGAGTGGCAGGGTTTCCAAACTGATGGCATGGCTGGTTTATGGAATGAAGGAGAACAAACTCCTGAAGAGCATCCCTTGTCATCAGAACTAGGCGGTAAACGACCTAAACATCCAGGGACTTGTTTTATGGATAACGGGCAATTTGGGGGTGAAACCAATGATGATCAAAGAAAAGCTACTGTTTTGAATAAGGAAGAATCTGTTGGCAAGAACCAACTTTGTGATGAAATGCCTAGTGACAACGATAGAGTTGAACGAAGGGGCAAGGTTGATGAATTTCATGATGCTCCTTCTAGTTCTGAGGAAAAAGATAATGCAGTTTCTGGTCAACAATTTGATGAAATGCAGATGGATAGTGGGCGTGCTCCTTCCGAAGACAAACTTGGCGCTGTTCATAAAAAAACTTATTCCCAGGATAAAGCTAGTGCTAACTTTGAGGAAGTATCTTTGGGCAACACCTCATGTCAGGGAACTAGTTATCAGGGGGGATTTGATTCAGCAAGAGGGAAAGAATCATGTGATTTGAGGGATCGGTTACCTGCCGAGGATGGCTATGTGAGTCCTGTTCAAAGAGATACAGCCATTGTTGGAAGTGATATAATCACTGATCGAGAAAAGCACAAGGAGACTGCTGAATACAAGCGAGCAATAGAAGAAGAAATGGAATCCAGGAAGCGAGTCTTACAAATTCAGGCAGAAGAGGCACAAAGATTACGGAAAAGGAGAAAGGCAGAAAGCATGCGTTTATTGGATATGCAGAGAAGGCAAAAGCAACGTGTGGAAGAAGTAAGAGAGACGCAAAAGAAGGATGAAGAAAATTTAAATTTGAAAGACCAACTTCGTGCTGAAGTAAGGAAGGAGCTTAAAAGATTGGAATTGACATGCATAGATATGGCTTCTTTGCTTCGTGGCTTAGGCATACAAGTGGGGGCTGATTTCCGTCCTTTGCCCAATGAGGTGCATGCAGCGTATAAACGGGCACTGCTGAAATTTCACCCAGACCGGGCATCAAGAAGTGACATACGCCAGCAAGTTGAAGCTGAGGAGAAGTTTAAGCTTATATCACGCATGAAGGAAAAACTTCTACCGACTTCATGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

45.74

Weight (kDa)

5.3

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69060
fragaria_vesca	FvH4_4g29350 FvH4_4g29350 FvH4_4g29350
malus_domestica	MD13G1056900.v1.1 MD16G1056300.v1.1
prunus_persica	Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1
pyrus_communis	pycom13g05080 pycom16g04930
rosa_chinensis	RchiOBHm_Chr4g0437421
rosa_laevigata	RLG00000006438
rosa_multiflora	Rmu_co8026288.1_g000001 Rmu_co8466195.1_g000001 Rmu_sc0006744.1_g000002 Rmu_sc0008352.1_g000003
rosa_roxburghii	Rroxscaffold_5G00378660
rosa_rugosa	Rorug04G0301400 Rorug04G0301500
rosa_samantha	Rh4AG355500 Rh4BG365900 Rh4CG380000 Rh4DG359600
rosa_wichuraiana	Rw4G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	655
AciI	CCGC	2 cut(s)	84, 201
AclWI	GGATC	4 cut(s)	35, 48, 89, 645
AcsI	RAATTY	5 cut(s)	383, 795, 925, 931, 1097
AcuI	CTGAAG	2 cut(s)	192, 975
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	1111
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	6 cut(s)	68, 295, 362, 677, 937, 1145
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	3 cut(s)	220, 519, 776
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 474, 506
AluBI	AGCT	5 cut(s)	284, 530, 970, 1148, 1165
AluI	AGCT	5 cut(s)	284, 530, 970, 1148, 1165
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	2 cut(s)	728, 896
AlwI	GGATC	4 cut(s)	35, 48, 89, 645
AlwNI	CAGNNNCTG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	1073
ApoI	RAATTY	5 cut(s)	383, 795, 925, 931, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
Asp700I	GAANNNNTTC	1 cut(s)	1188
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	1112
AsuHPI	GGTGA	2 cut(s)	269, 1094
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	1090
BamHI	GGATCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	475
BbvCI	CCTCAGC	1 cut(s)	1149
BbvI	GCAGC	1 cut(s)	1085
BccI	CCATC	5 cut(s)	8, 47, 125, 451, 650
BciT130I	CCWGG	3 cut(s)	222, 521, 778
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	1112
BcoDI	GTCTC	2 cut(s)	728, 896
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	5 cut(s)	197, 342, 402, 531, 582
BfoI	RGCGCY	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	2 cut(s)	84, 1074
BlsI	GCNGC	2 cut(s)	85, 1075
Bme1390I	CCNGG	4 cut(s)	222, 521, 778, 1112
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	4 cut(s)	222, 521, 778, 1112
BmsI	GCATC	3 cut(s)	187, 382, 1124
BpiI	GAAGAC	1 cut(s)	489
Bpu10I	CCTNAGC	2 cut(s)	1021, 1149
BpuMI	CCSGG	1 cut(s)	1112
BsaJI	CCNNGG	3 cut(s)	221, 519, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	1111
BseBI	CCWGG	3 cut(s)	222, 521, 778
BseDI	CCNNGG	3 cut(s)	221, 519, 651
BseGI	GGATG	5 cut(s)	58, 178, 217, 661, 922
BseLI	CCNNNNNNNGG	1 cut(s)	1111
BseMII	CTCAG	3 cut(s)	15, 399, 1140
BseRI	GAGGAG	1 cut(s)	1166
BseSI	GKGCMC	1 cut(s)	1090
BseXI	GCAGC	1 cut(s)	1085
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	1111
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	1111
BsmAI	GTCTC	2 cut(s)	728, 896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	475, 1090
Bsp143I	GATC	5 cut(s)	40, 94, 271, 637, 715
BspACI	CCGC	2 cut(s)	84, 201
BspCNI	CTCAG	3 cut(s)	16, 400, 1141
BspHI	TCATGA	2 cut(s)	10, 388
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	4 cut(s)	35, 48, 89, 645
BspQI	GCTCTTC	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	221, 519, 651
BssMI	GATC	5 cut(s)	40, 94, 271, 637, 715
Bst2UI	CCWGG	3 cut(s)	222, 521, 778
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	168, 801
BstC8I	GCNNGC	5 cut(s)	471, 753, 848, 1071, 1136
BstDEI	CTNAG	4 cut(s)	24, 408, 1021, 1149
BstEII	GGTNACC	1 cut(s)	642
BstF5I	GGATG	5 cut(s)	58, 178, 217, 661, 922
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	5 cut(s)	43, 97, 274, 640, 718
BstMAI	GTCTC	2 cut(s)	728, 896
BstMBI	GATC	5 cut(s)	40, 94, 271, 637, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	809, 871
BstNI	CCWGG	3 cut(s)	222, 521, 778
BstNSI	RCATGY	3 cut(s)	850, 993, 1073
BstPI	GGTNACC	1 cut(s)	642
BstSCI	CCNGG	4 cut(s)	220, 519, 776, 1110
BstSLI	GKGCMC	1 cut(s)	1090
BstV1I	GCAGC	1 cut(s)	1085
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	2 cut(s)	40, 94
BstXI	CCANNNNNNTGG	2 cut(s)	53, 131
BstYI	RGATCY	2 cut(s)	40, 94
BtsCI	GGATG	5 cut(s)	58, 178, 217, 661, 922
BtsI	GCAGTG	1 cut(s)	1088
BtsIMutI	CAGTG	3 cut(s)	21, 711, 1088
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	5 cut(s)	471, 753, 848, 1071, 1136
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	2 cut(s)	10, 388
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	6
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	4 cut(s)	24, 408, 1021, 1149
DpnI	GATC	5 cut(s)	42, 96, 273, 639, 717
DpnII	GATC	5 cut(s)	40, 94, 271, 637, 715
DraI	TTTAAA	1 cut(s)	930
Eam1104I	CTCTTC	2 cut(s)	168, 801
EarI	CTCTTC	2 cut(s)	168, 801
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	2 cut(s)	192, 975
Eco91I	GGTNACC	1 cut(s)	642
EcoO65I	GGTNACC	1 cut(s)	642
EcoRII	CCWGG	3 cut(s)	220, 519, 776
EcoT22I	ATGCAT	1 cut(s)	995
Esp3I	CGTCTC	1 cut(s)	896
FalI	AAGNNNNNCTT	8 cut(s)	84, 116, 474, 506, 773, 805, 930, 962
FaqI	GGGAC	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	84, 1074
FokI	GGATG	5 cut(s)	65, 165, 204, 668, 929
Fsp4HI	GCNGC	2 cut(s)	84, 1074
FspBI	CTAG	5 cut(s)	197, 342, 402, 531, 582
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	2 cut(s)	84, 1074
HaeII	RGCGCY	1 cut(s)	498
HapII	CCGG	1 cut(s)	1111
HgaI	GACGC	1 cut(s)	913
HhaI	GCGC	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HindIII	AAGCTT	1 cut(s)	1163
HinfI	GANTC	7 cut(s)	68, 305, 602, 620, 667, 773, 786
HpaII	CCGG	1 cut(s)	1111
HphI	GGTGA	2 cut(s)	269, 1094
Hpy166II	GTNNAC	2 cut(s)	206, 437
Hpy188I	TCNGA	4 cut(s)	78, 193, 409, 481
Hpy188III	TCNNGA	5 cut(s)	11, 170, 389, 719, 1119
Hpy8I	GTNNAC	2 cut(s)	206, 437
HpyAV	CCTTC	8 cut(s)	149, 360, 408, 486, 864, 907, 958, 1174
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	883
HpyCH4V	TGCA	6 cut(s)	425, 454, 865, 993, 1069, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	809, 871
HpyF3I	CTNAG	4 cut(s)	24, 408, 1021, 1149
HpySE526I	ACGT	1 cut(s)	883
HspAI	GCGC	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	40, 94, 271, 637, 715
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	3 cut(s)	400, 478, 967
Lsp1109I	GCAGC	1 cut(s)	1085
LweI	GCATC	3 cut(s)	187, 382, 1124
MaeI	CTAG	5 cut(s)	197, 342, 402, 531, 582
MaeII	ACGT	1 cut(s)	883
MaeIII	GTNAC	4 cut(s)	344, 642, 1124, 1205
MalI	GATC	5 cut(s)	42, 96, 273, 639, 717
MboI	GATC	5 cut(s)	40, 94, 271, 637, 715
MboII	GAAGA	9 cut(s)	104, 185, 314, 494, 773, 776, 818, 902, 932
MflI	RGATCY	2 cut(s)	40, 94
MhlI	GDGCHC	2 cut(s)	475, 1090
MluCI	AATT	8 cut(s)	248, 383, 440, 795, 925, 931, 983, 1097
MlyI	GAGTC	2 cut(s)	676, 795
MmeI	TCCRAC	1 cut(s)	676
Mph1103I	ATGCAT	1 cut(s)	995
MroXI	GAANNNNTTC	1 cut(s)	1188
MseI	TTAA	3 cut(s)	929, 972, 1161
MslI	CAYNNNNRTG	2 cut(s)	998, 1031
MspI	CCGG	1 cut(s)	1111
MspR9I	CCNGG	4 cut(s)	222, 521, 778, 1112
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	3 cut(s)	222, 521, 778
MwoI	GCNNNNNNNGC	2 cut(s)	809, 871
NciI	CCSGG	1 cut(s)	1112
NdeII	GATC	5 cut(s)	40, 94, 271, 637, 715
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	2 cut(s)	344, 1124
NsiI	ATGCAT	1 cut(s)	995
NspI	RCATGY	3 cut(s)	850, 993, 1073
PaeI	GCATGC	2 cut(s)	850, 1073
PagI	TCATGA	2 cut(s)	10, 388
PciSI	GCTCTTC	1 cut(s)	168
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	1188
PfeI	GAWTC	5 cut(s)	68, 305, 602, 620, 773
PfoI	TCCNGGA	1 cut(s)	776
PkrI	GCNGC	2 cut(s)	85, 1075
PleI	GAGTC	2 cut(s)	675, 794
PpsI	GAGTC	2 cut(s)	675, 794
Psp6I	CCWGG	3 cut(s)	220, 519, 776
PspEI	GGTNACC	1 cut(s)	642
PspGI	CCWGG	3 cut(s)	220, 519, 776
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	2 cut(s)	40, 94
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	998, 1031
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	929, 972, 1161
SatI	GCNGC	2 cut(s)	84, 1074
Sau3AI	GATC	5 cut(s)	40, 94, 271, 637, 715
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	2 cut(s)	676, 795
ScrFI	CCNGG	4 cut(s)	222, 521, 778, 1112
SduI	GDGCHC	2 cut(s)	475, 1090
SfaNI	GCATC	3 cut(s)	187, 382, 1124
SinI	GGWCC	1 cut(s)	56
SmiI	ATTTAAAT	1 cut(s)	930
SmiMI	CAYNNNNRTG	2 cut(s)	998, 1031
SpeI	ACTAGT	1 cut(s)	581
SphI	GCATGC	2 cut(s)	850, 1073
Sse9I	AATT	8 cut(s)	248, 383, 440, 795, 925, 931, 983, 1097
SsiI	CCGC	2 cut(s)	84, 201
SspMI	CTAG	5 cut(s)	197, 342, 402, 531, 582
StyD4I	CCNGG	4 cut(s)	220, 519, 776, 1110
SwaI	ATTTAAAT	1 cut(s)	930
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	886
TaqI	TCGA	1 cut(s)	718
TasI	AATT	8 cut(s)	248, 383, 440, 795, 925, 931, 983, 1097
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	5 cut(s)	68, 305, 602, 620, 773
Tru1I	TTAA	3 cut(s)	929, 972, 1161
Tru9I	TTAA	3 cut(s)	929, 972, 1161
TscAI	CASTG	3 cut(s)	28, 718, 1095
TseFI	GTSAC	2 cut(s)	344, 1124
TseI	GCWGC	1 cut(s)	1073
Tsp45I	GTSAC	2 cut(s)	344, 1124
TspDTI	ATGAA	9 cut(s)	168, 348, 377, 396, 462, 491, 933, 1191, 1193
TspGWI	ACGGA	2 cut(s)	838, 1037
TspRI	CASTG	3 cut(s)	28, 718, 1095
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	5 cut(s)	383, 795, 925, 931, 1097
XceI	RCATGY	3 cut(s)	850, 993, 1073
XmnI	GAANNNNTTC	1 cut(s)	1188
XspI	CTAG	5 cut(s)	197, 342, 402, 531, 582
Zsp2I	ATGCAT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.