RLG00000006438

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006214
Physical Location & Seq
Reverse (-)
7158100 .. 7159387
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006438

Sequence Viewer

Length: 456 bp
ATGGAAGAAGAAATGGAATCCAGGCGGCAAGTCTTACAAATTCAGGCAGAAGAGGCACAGAGATTGCGTAAGAGGAAAAAAGCTGAAAGCATGCGCTTATTGGACATGCAGAGAAGGCAAAAGCAACGTGTGGAAGAAGTTAGAGAAACTCAAAAGAAGGATGAAGAAAATTTGAACATGAAAGAGAAACTTCGTGCTGAAGTAAGGAAGGAACTCAACAGATTGGAATCGTCATGCAATAGCATGGCTTCTTTGCTTCGCGGCTTGGGAATACAAGTGGGGTCAGGTGTGCATCCTTTGCCACAGGAGGTGCATGCAGCTTATAAACGGGCATTATTGAAATTTCACCCTGATCGGGCATCAAGAACTGACATCCGCCAGATGGTTGAAGCTGAGGAAAAATTTAAGCTTATATCTCGCATGAAGGAGAAACTTATATCAACTACGTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.98

Weight (kDa)

9.89

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 102 - 145 8e-06 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 25, 261, 376
AcsI RAATTY 4 cut(s) 39, 169, 341, 401
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 355, 382
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 3 cut(s) 175, 340, 389
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 4 cut(s) 83, 320, 392, 409
AluI AGCT 4 cut(s) 83, 320, 392, 409
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 4 cut(s) 39, 169, 341, 401
AspLEI GCGC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 22
BisI GCNGC 3 cut(s) 26, 262, 318
BlsI GCNGC 3 cut(s) 27, 263, 319
Bme1390I CCNGG 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 2 cut(s) 301, 368
Bpu10I CCTNAGC 1 cut(s) 393
BsaAI YACGTR 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 382
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 166, 292, 372
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 355, 382
BseMII CTCAG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 355, 382
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 3 cut(s) 25, 261, 376
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 1 cut(s) 261
BssMI GATC 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 92, 315
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 166, 292, 372
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 3 cut(s) 53, 115, 298
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 3 cut(s) 94, 109, 317
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 329
BtsCI GGATG 3 cut(s) 166, 292, 372
Cac8I GCNNGC 2 cut(s) 92, 315
CfoI GCGC 1 cut(s) 96
CviAII CATG 7 cut(s) 91, 106, 178, 234, 244, 314, 421
CviJI RGCY 6 cut(s) 83, 248, 264, 320, 392, 409
CviKI_1 RGCY 6 cut(s) 83, 248, 264, 320, 392, 409
DdeI CTNAG 1 cut(s) 393
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 7 cut(s) 94, 109, 181, 237, 247, 317, 424
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 7 cut(s) 90, 105, 177, 233, 243, 313, 420
Fnu4HI GCNGC 3 cut(s) 26, 262, 318
FokI GGATG 3 cut(s) 173, 279, 359
Fsp4HI GCNGC 3 cut(s) 26, 262, 318
GlaI GCGC 1 cut(s) 95
GluI GCNGC 3 cut(s) 26, 262, 318
HhaI GCGC 1 cut(s) 96
Hin1II CATG 7 cut(s) 94, 109, 181, 237, 247, 317, 424
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 2 cut(s) 17, 227
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 455
Hpy188III TCNNGA 1 cut(s) 363
HpyAV CCTTC 4 cut(s) 108, 151, 202, 418
HpyCH4IV ACGT 2 cut(s) 127, 446
HpyCH4V TGCA 5 cut(s) 109, 237, 292, 313, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 115, 298
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 2 cut(s) 127, 446
Hsp92II CATG 7 cut(s) 94, 109, 181, 237, 247, 317, 424
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 7 cut(s) 7, 29, 34, 270, 290, 363, 392
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 301, 368
MaeII ACGT 2 cut(s) 127, 446
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 5 cut(s) 17, 20, 62, 146, 176
MluCI AATT 4 cut(s) 39, 169, 341, 401
MnlI CCTC 4 cut(s) 46, 66, 301, 388
MseI TTAA 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 53, 115, 298
NdeII GATC 1 cut(s) 352
NlaIII CATG 7 cut(s) 94, 109, 181, 237, 247, 317, 424
NspI RCATGY 3 cut(s) 94, 109, 317
PaeI GCATGC 2 cut(s) 94, 317
PfeI GAWTC 2 cut(s) 17, 227
PkrI GCNGC 3 cut(s) 27, 263, 319
Ppu21I YACGTR 1 cut(s) 447
PsiI TTATAA 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 3 cut(s) 26, 262, 318
Sau3AI GATC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 22
SetI ASST 8 cut(s) 85, 130, 289, 312, 322, 394, 411, 449
SfaNI GCATC 2 cut(s) 301, 368
SphI GCATGC 2 cut(s) 94, 317
Sse9I AATT 4 cut(s) 39, 169, 341, 401
SsiI CCGC 3 cut(s) 25, 261, 376
StyD4I CCNGG 1 cut(s) 20
TaiI ACGT 2 cut(s) 130, 449
TasI AATT 4 cut(s) 39, 169, 341, 401
TauI GCSGC 2 cut(s) 28, 264
TfiI GAWTC 2 cut(s) 17, 227
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 177, 194, 437
XapI RAATTY 4 cut(s) 39, 169, 341, 401
XceI RCATGY 3 cut(s) 94, 109, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.