Rmu_sc0006744.1_g000002

DnaJ molecular chaperone homology domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006744.1
Physical Location & Seq
Forward (+)
12518 .. 20714
8197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006744.1_g000002.1.cds

Sequence Viewer

Length: 1419 bp
atgagaggggcaaaatcatcaagagtctttcctgggcttggaagatgttctgggaaaaagcctgtagaaagttgcaaggttaataagggtgttagcaaagttgagatcatcgatcttgacgacgatgatgatgtcattgacatcgatgatatcgagcagccacaatctcgaggttccagtacattgagacaaaacagagaatttagtaccgtcattgatatagatgatgacgatgatgcaagtagtgataccgataccgtaatttctgttgaagaggttggggacctggacagtgacgccacctctagcaaaagttggttccccacttctaactataggcggagttccttacgctcagatggagatgaatgtgaagttgtccaggaaaagggttttccatccaaggggtcaaaaggcaagcaaacccattctgggacagctccccgtagatatggttatggtttatattctgagtctgagtccgattcctctgatactgattattctgattgtgagttaatagaaggttcagtgcttcatgaacattggaaaaaagcttcccaaaagagaaaacatgttgttcataattgtcggccgggtccagaggatcaagctagtggatctggatctcatggtgatactgttgatgtggagaataggacagaacagcatgcagaggctcctgtttgttcaagttcagagcatggaaattatgaaaaagaaagccctccggacatgggaactcatgatgaccactttgatggtagttcttttgaggccaaaatgaaaactgcttctgtggagtccaatcagaatgttgctaaggatagttttccatgtgcaaaaccagggtcagctaaagaaacagaaagcatacataggaatgatgattttcagcataacctcgcagtcgccgtcctgggcctagaacgtcgcagtcgccgccctcggtctagaacgttgcctgcatctcctgtcgtagctcgagccgactctagcttgcaccggcctctcctattcaactaccgcaaagttccacagcctgtcagatcggcccctgccctttaccgacctcctccccgcctgcgcagatcctacaccgagcccagcaacccagcgctgcgtagatcccacaccgatcccaaccgcctgcagcaccacctccgccttgcaccagagcctcacctgttccccttcaccggagcctcatctgcagcaccgatcccccagcctccatcctccggcccagaagaagaacagagaaccaaaagaagaagaacacgaaggaagaagaagaagaaaaaaagaaaaaagaaaaaaaagggtgacccggcccaaaagaaaaaaaaagagtgtggccaggcccaaagaaaagaggcagcccaacaaaaaaaaaggggccctgaggcccacagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

472

Amino Acids

52.6

Weight (kDa)

9.09

Isoelectric Point (pI)

69.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1088
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 6 cut(s) 340, 943, 1027, 1081, 1147, 1165
AclI AACGTT 1 cut(s) 959
AclWI GGATC 7 cut(s) 615, 628, 634, 1086, 1122, 1133, 1216
AcoI YGGCCR 2 cut(s) 593, 1357
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 181, 208
AfeI AGCGCT 1 cut(s) 1119
AfiI CCNNNNNNNGG 7 cut(s) 38, 388, 404, 432, 737, 1199, 1241
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 3 cut(s) 272, 693, 1021
AjnI CCWGG 6 cut(s) 31, 285, 381, 847, 918, 1359
AluBI AGCT 6 cut(s) 440, 557, 614, 857, 983, 999
AluI AGCT 6 cut(s) 440, 557, 614, 857, 983, 999
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 7 cut(s) 615, 628, 634, 1086, 1122, 1133, 1216
Ama87I CYCGRG 2 cut(s) 168, 984
Aor13HI TCCGGA 1 cut(s) 730
Aor51HI AGCGCT 1 cut(s) 1119
ApaI GGGCCC 1 cut(s) 1403
ApeKI GCWGC 5 cut(s) 157, 1120, 1153, 1214, 1379
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
Asp700I GAANNNNTTC 1 cut(s) 46
AspLEI GCGC 2 cut(s) 1089, 1120
AsuC2I CCSGG 2 cut(s) 597, 1331
AsuHPI GGTGA 4 cut(s) 647, 1175, 1189, 1337
AvaI CYCGRG 2 cut(s) 168, 984
AvaII GGWCC 2 cut(s) 283, 599
AxyI CCTNAGG 1 cut(s) 1404
BaeGI GKGCMC 1 cut(s) 1403
BalI TGGCCA 1 cut(s) 1359
BanII GRGCYC 2 cut(s) 1107, 1403
BbvI GCAGC 5 cut(s) 169, 1107, 1165, 1226, 1391
BccI CCATC 4 cut(s) 353, 406, 755, 1243
BceAI ACGGC 1 cut(s) 899
BciT130I CCWGG 6 cut(s) 33, 287, 383, 849, 920, 1361
BcnI CCSGG 2 cut(s) 597, 1331
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 5 cut(s) 306, 615, 926, 954, 996
BfmI CTRYAG 4 cut(s) 63, 334, 1151, 1212
BfoI RGCGCY 1 cut(s) 1121
BisI GCNGC 6 cut(s) 158, 943, 1121, 1154, 1215, 1380
BlsI GCNGC 6 cut(s) 159, 944, 1122, 1155, 1216, 1381
Bme1390I CCNGG 8 cut(s) 33, 287, 383, 597, 849, 920, 1331, 1361
Bme18I GGWCC 2 cut(s) 283, 599
BmeT110I CYCGRG 2 cut(s) 168, 984
BmiI GGNNCC 9 cut(s) 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401
BmrFI CCNGG 8 cut(s) 33, 287, 383, 597, 849, 920, 1331, 1361
BmsI GCATC 2 cut(s) 226, 977
Bpu10I CCTNAGC 1 cut(s) 822
BpuMI CCSGG 2 cut(s) 597, 1331
Bsa29I ATCGAT 2 cut(s) 111, 144
BsaBI GATNNNNATC 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 5 cut(s) 32, 402, 848, 919, 947
BsaWI WCCGGW 2 cut(s) 730, 1199
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 388, 404, 432, 737, 1199, 1241
Bse118I RCCGGY 1 cut(s) 1005
Bse1I ACTGG 1 cut(s) 177
Bse21I CCTNAGG 1 cut(s) 1404
Bse8I GATNNNNATC 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 6 cut(s) 33, 287, 383, 849, 920, 1361
BseCI ATCGAT 2 cut(s) 111, 144
BseDI CCNNGG 5 cut(s) 32, 402, 848, 919, 947
BseGI GGATG 2 cut(s) 398, 1235
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 7 cut(s) 38, 388, 404, 432, 737, 1199, 1241
BseMII CTCAG 4 cut(s) 369, 462, 468, 1395
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 1065
BseSI GKGCMC 1 cut(s) 1403
BseX3I CGGCCG 1 cut(s) 593
BseXI GCAGC 5 cut(s) 169, 1107, 1165, 1226, 1391
BseYI CCCAGC 3 cut(s) 1106, 1114, 1227
Bsh1285I CGRYCG 1 cut(s) 596
BshVI ATCGAT 2 cut(s) 111, 144
BsiEI CGRYCG 1 cut(s) 596
BsiHKCI CYCGRG 2 cut(s) 168, 984
BsiSI CCGG 6 cut(s) 596, 731, 1006, 1200, 1242, 1331
BslFI GGGAC 2 cut(s) 296, 448
BslI CCNNNNNNNGG 7 cut(s) 38, 388, 404, 432, 737, 1199, 1241
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 296, 448
BsoBI CYCGRG 2 cut(s) 168, 984
Bsp120I GGGCCC 1 cut(s) 1399
Bsp1286I GDGCHC 2 cut(s) 1107, 1403
Bsp13I TCCGGA 1 cut(s) 730
BspACI CCGC 6 cut(s) 340, 943, 1027, 1081, 1147, 1165
BspCNI CTCAG 4 cut(s) 368, 463, 469, 1396
BspDI ATCGAT 2 cut(s) 111, 144
BspEI TCCGGA 1 cut(s) 730
BspHI TCATGA 2 cut(s) 538, 745
BspLI GGNNCC 9 cut(s) 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401
BspMAI CTGCAG 2 cut(s) 1155, 1216
BspPI GGATC 7 cut(s) 615, 628, 634, 1086, 1122, 1133, 1216
BsrFI RCCGGY 1 cut(s) 1005
BsrI ACTGG 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 1005
BssECI CCNNGG 5 cut(s) 32, 402, 848, 919, 947
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 6 cut(s) 33, 287, 383, 849, 920, 1361
Bst4CI ACNGT 4 cut(s) 211, 259, 293, 643
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 6 cut(s) 419, 672, 966, 1001, 1085, 1151
BstDEI CTNAG 5 cut(s) 355, 471, 477, 822, 1404
BstEII GGTNACC 1 cut(s) 1325
BstF5I GGATG 2 cut(s) 398, 1235
BstH2I RGCGCY 1 cut(s) 1121
BstHHI GCGC 2 cut(s) 1089, 1120
BstMAI GTCTC 1 cut(s) 181
BstMCI CGRYCG 1 cut(s) 596
BstMWI GCNNNNNNNGC 2 cut(s) 942, 1211
BstNI CCWGG 6 cut(s) 33, 287, 383, 849, 920, 1361
BstNSI RCATGY 2 cut(s) 578, 674
BstPI GGTNACC 1 cut(s) 1325
BstSCI CCNGG 8 cut(s) 31, 285, 381, 595, 847, 918, 1329, 1359
BstSFI CTRYAG 4 cut(s) 63, 334, 1151, 1212
BstSLI GKGCMC 1 cut(s) 1403
BstV1I GCAGC 5 cut(s) 169, 1107, 1165, 1226, 1391
BstX2I RGATCY 4 cut(s) 620, 626, 1091, 1127
BstXI CCANNNNNNTGG 1 cut(s) 761
BstYI RGATCY 4 cut(s) 620, 626, 1091, 1127
BstZI CGGCCG 1 cut(s) 593
Bsu15I ATCGAT 2 cut(s) 111, 144
Bsu36I CCTNAGG 1 cut(s) 1404
BsuTUI ATCGAT 2 cut(s) 111, 144
BtsCI GGATG 2 cut(s) 398, 1235
BtsIMutI CAGTG 2 cut(s) 298, 537
Cac8I GCNNGC 6 cut(s) 419, 672, 966, 1001, 1085, 1151
CciI TCATGA 2 cut(s) 538, 745
CfoI GCGC 2 cut(s) 1089, 1120
Cfr10I RCCGGY 1 cut(s) 1005
ClaI ATCGAT 2 cut(s) 111, 144
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 180, 207
CviAII CATG 8 cut(s) 539, 575, 632, 671, 704, 736, 746, 837
CviQI GTAC 2 cut(s) 180, 207
DdeI CTNAG 5 cut(s) 355, 471, 477, 822, 1404
EaeI YGGCCR 2 cut(s) 593, 1357
EagI CGGCCG 1 cut(s) 593
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 2 cut(s) 355, 1154
EclXI CGGCCG 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 2 cut(s) 1107, 1403
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 283, 599
Eco47III AGCGCT 1 cut(s) 1119
Eco52I CGGCCG 1 cut(s) 593
Eco81I CCTNAGG 1 cut(s) 1404
Eco88I CYCGRG 2 cut(s) 168, 984
Eco91I GGTNACC 1 cut(s) 1325
EcoO109I RGGNCCY 3 cut(s) 283, 1399, 1400
EcoO65I GGTNACC 1 cut(s) 1325
EcoRII CCWGG 6 cut(s) 31, 285, 381, 847, 918, 1359
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 2 cut(s) 1107, 1403
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 8 cut(s) 542, 578, 635, 674, 707, 739, 749, 840
FaqI GGGAC 2 cut(s) 296, 448
FatI CATG 8 cut(s) 538, 574, 631, 670, 703, 735, 745, 836
FauI CCCGC 1 cut(s) 1088
Fnu4HI GCNGC 6 cut(s) 158, 943, 1121, 1154, 1215, 1380
FokI GGATG 2 cut(s) 385, 1222
FriOI GRGCYC 2 cut(s) 1107, 1403
Fsp4HI GCNGC 6 cut(s) 158, 943, 1121, 1154, 1215, 1380
FspBI CTAG 5 cut(s) 306, 615, 926, 954, 996
FspI TGCGCA 1 cut(s) 1088
GlaI GCGC 2 cut(s) 1088, 1119
GluI GCNGC 6 cut(s) 158, 943, 1121, 1154, 1215, 1380
GsaI CCCAGC 3 cut(s) 1110, 1118, 1231
HaeII RGCGCY 1 cut(s) 1121
HapII CCGG 6 cut(s) 596, 731, 1006, 1200, 1242, 1331
HgaI GACGC 1 cut(s) 305
HhaI GCGC 2 cut(s) 1089, 1120
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 8 cut(s) 542, 578, 635, 674, 707, 739, 749, 840
Hin6I GCGC 2 cut(s) 1087, 1118
HinP1I GCGC 2 cut(s) 1087, 1118
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 6 cut(s) 24, 473, 479, 485, 803, 992
HpaII CCGG 6 cut(s) 596, 731, 1006, 1200, 1242, 1331
HphI GGTGA 4 cut(s) 647, 1175, 1189, 1337
Hpy188I TCNGA 9 cut(s) 358, 472, 478, 484, 493, 508, 700, 813, 1049
Hpy188III TCNNGA 9 cut(s) 21, 116, 168, 539, 602, 624, 731, 746, 954
Hpy99I CGWCG 2 cut(s) 125, 936
HpyAV CCTTC 3 cut(s) 518, 1204, 1278
HpyCH4III ACNGT 4 cut(s) 211, 259, 293, 643
HpyCH4IV ACGT 2 cut(s) 931, 959
HpyCH4V TGCA 9 cut(s) 75, 239, 674, 842, 968, 1003, 1153, 1172, 1214
HpyF10VI GCNNNNNNNGC 2 cut(s) 942, 1211
HpyF3I CTNAG 5 cut(s) 355, 471, 477, 822, 1404
HpySE526I ACGT 2 cut(s) 931, 959
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 8 cut(s) 542, 578, 635, 674, 707, 739, 749, 840
HspAI GCGC 2 cut(s) 1087, 1118
Kpn2I TCCGGA 1 cut(s) 730
LmnI GCTCC 3 cut(s) 445, 685, 1202
Lsp1109I GCAGC 5 cut(s) 169, 1107, 1165, 1226, 1391
LweI GCATC 2 cut(s) 226, 977
MaeI CTAG 5 cut(s) 306, 615, 926, 954, 996
MaeII ACGT 2 cut(s) 931, 959
MaeIII GTNAC 2 cut(s) 293, 1325
MflI RGATCY 4 cut(s) 620, 626, 1091, 1127
MhlI GDGCHC 2 cut(s) 1107, 1403
MlsI TGGCCA 1 cut(s) 1359
MluCI AATT 4 cut(s) 200, 261, 586, 709
MluNI TGGCCA 1 cut(s) 1359
MlyI GAGTC 5 cut(s) 33, 482, 488, 812, 986
Mox20I TGGCCA 1 cut(s) 1359
MroI TCCGGA 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 46
MscI TGGCCA 1 cut(s) 1359
MseI TTAA 2 cut(s) 81, 518
MslI CAYNNNNRTG 2 cut(s) 759, 882
Msp20I TGGCCA 1 cut(s) 1359
MspI CCGG 6 cut(s) 596, 731, 1006, 1200, 1242, 1331
MspR9I CCNGG 8 cut(s) 33, 287, 383, 597, 849, 920, 1331, 1361
MvaI CCWGG 6 cut(s) 33, 287, 383, 849, 920, 1361
MwoI GCNNNNNNNGC 2 cut(s) 942, 1211
NciI CCSGG 2 cut(s) 597, 1331
NlaIII CATG 8 cut(s) 542, 578, 635, 674, 707, 739, 749, 840
NlaIV GGNNCC 9 cut(s) 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401
NmuCI GTSAC 2 cut(s) 293, 1325
NsbI TGCGCA 1 cut(s) 1088
NspI RCATGY 2 cut(s) 578, 674
PaeI GCATGC 1 cut(s) 674
PaeR7I CTCGAG 2 cut(s) 168, 984
PagI TCATGA 2 cut(s) 538, 745
PciI ACATGT 1 cut(s) 574
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 150, 912
PdmI GAANNNNTTC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 485
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 6 cut(s) 159, 944, 1122, 1155, 1216, 1381
PleI GAGTC 5 cut(s) 32, 481, 487, 811, 986
PpsI GAGTC 5 cut(s) 32, 481, 487, 811, 986
PpuMI RGGWCCY 1 cut(s) 283
PscI ACATGT 1 cut(s) 574
Psp1406I AACGTT 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 6 cut(s) 31, 285, 381, 847, 918, 1359
PspEI GGTNACC 1 cut(s) 1325
PspFI CCCAGC 3 cut(s) 1106, 1114, 1227
PspGI CCWGG 6 cut(s) 31, 285, 381, 847, 918, 1359
PspN4I GGNNCC 9 cut(s) 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401
PspOMI GGGCCC 1 cut(s) 1399
PspPPI RGGWCCY 1 cut(s) 283
PspXI VCTCGAGB 1 cut(s) 984
PstI CTGCAG 2 cut(s) 1155, 1216
PsuI RGATCY 4 cut(s) 620, 626, 1091, 1127
RsaI GTAC 2 cut(s) 181, 208
RsaNI GTAC 2 cut(s) 180, 207
RseI CAYNNNNRTG 2 cut(s) 759, 882
SaqAI TTAA 2 cut(s) 81, 518
SatI GCNGC 6 cut(s) 158, 943, 1121, 1154, 1215, 1380
SchI GAGTC 5 cut(s) 33, 482, 488, 812, 986
ScrFI CCNGG 8 cut(s) 33, 287, 383, 597, 849, 920, 1331, 1361
SduI GDGCHC 2 cut(s) 1107, 1403
SfaNI GCATC 2 cut(s) 226, 977
SfcI CTRYAG 4 cut(s) 63, 334, 1151, 1212
Sfr274I CTCGAG 2 cut(s) 168, 984
SinI GGWCC 2 cut(s) 283, 599
SlaI CTCGAG 2 cut(s) 168, 984
SmiMI CAYNNNNRTG 2 cut(s) 759, 882
SmlI CTYRAG 2 cut(s) 168, 984
SmoI CTYRAG 2 cut(s) 168, 984
SphI GCATGC 1 cut(s) 674
Sse9I AATT 4 cut(s) 200, 261, 586, 709
SsiI CCGC 6 cut(s) 340, 943, 1027, 1081, 1147, 1165
SspMI CTAG 5 cut(s) 306, 615, 926, 954, 996
StyD4I CCNGG 8 cut(s) 31, 285, 381, 595, 847, 918, 1329, 1359
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 4 cut(s) 211, 259, 293, 643
TaiI ACGT 2 cut(s) 934, 962
TaqI TCGA 5 cut(s) 111, 144, 153, 169, 985
TaqII GACCGA 1 cut(s) 939
TasI AATT 4 cut(s) 200, 261, 586, 709
TatI WGTACW 1 cut(s) 179
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 2 cut(s) 81, 518
Tru9I TTAA 2 cut(s) 81, 518
TscAI CASTG 2 cut(s) 298, 537
TseFI GTSAC 2 cut(s) 293, 1325
TseI GCWGC 5 cut(s) 157, 1120, 1153, 1214, 1379
Tsp45I GTSAC 2 cut(s) 293, 1325
TspDTI ATGAA 6 cut(s) 381, 527, 555, 572, 729, 800
TspRI CASTG 2 cut(s) 298, 537
VpaK11BI GGWCC 2 cut(s) 283, 599
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 953
XceI RCATGY 2 cut(s) 578, 674
XhoI CTCGAG 2 cut(s) 168, 984
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 5 cut(s) 306, 615, 926, 954, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.