DnaJ molecular chaperone homology domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G69060 |
| fragaria_vesca | FvH4_4g29350 FvH4_4g29350 FvH4_4g29350 |
| malus_domestica | MD13G1056900.v1.1 MD16G1056300.v1.1 |
| prunus_persica | Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 |
| pyrus_communis | pycom13g05080 pycom16g04930 |
| rosa_chinensis | RchiOBHm_Chr4g0437421 |
| rosa_laevigata | RLG00000006438 |
| rosa_multiflora | Rmu_co8026288.1_g000001 Rmu_co8466195.1_g000001 Rmu_sc0006744.1_g000002 Rmu_sc0008352.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00378660 |
| rosa_rugosa | Rorug04G0301400 Rorug04G0301500 |
| rosa_samantha | Rh4AG355500 Rh4BG365900 Rh4CG380000 Rh4DG359600 |
| rosa_wichuraiana | Rw4G031210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1088 |
| AccIII | TCCGGA | 1 cut(s) | 730 |
| AciI | CCGC | 6 cut(s) | 340, 943, 1027, 1081, 1147, 1165 |
| AclI | AACGTT | 1 cut(s) | 959 |
| AclWI | GGATC | 7 cut(s) | 615, 628, 634, 1086, 1122, 1133, 1216 |
| AcoI | YGGCCR | 2 cut(s) | 593, 1357 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AcyI | GRCGYC | 1 cut(s) | 297 |
| AfaI | GTAC | 2 cut(s) | 181, 208 |
| AfeI | AGCGCT | 1 cut(s) | 1119 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 38, 388, 404, 432, 737, 1199, 1241 |
| AflIII | ACRYGT | 1 cut(s) | 574 |
| AgsI | TTSAA | 3 cut(s) | 272, 693, 1021 |
| AjnI | CCWGG | 6 cut(s) | 31, 285, 381, 847, 918, 1359 |
| AluBI | AGCT | 6 cut(s) | 440, 557, 614, 857, 983, 999 |
| AluI | AGCT | 6 cut(s) | 440, 557, 614, 857, 983, 999 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AlwI | GGATC | 7 cut(s) | 615, 628, 634, 1086, 1122, 1133, 1216 |
| Ama87I | CYCGRG | 2 cut(s) | 168, 984 |
| Aor13HI | TCCGGA | 1 cut(s) | 730 |
| Aor51HI | AGCGCT | 1 cut(s) | 1119 |
| ApaI | GGGCCC | 1 cut(s) | 1403 |
| ApeKI | GCWGC | 5 cut(s) | 157, 1120, 1153, 1214, 1379 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 836, 868 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 46 |
| AspLEI | GCGC | 2 cut(s) | 1089, 1120 |
| AsuC2I | CCSGG | 2 cut(s) | 597, 1331 |
| AsuHPI | GGTGA | 4 cut(s) | 647, 1175, 1189, 1337 |
| AvaI | CYCGRG | 2 cut(s) | 168, 984 |
| AvaII | GGWCC | 2 cut(s) | 283, 599 |
| AxyI | CCTNAGG | 1 cut(s) | 1404 |
| BaeGI | GKGCMC | 1 cut(s) | 1403 |
| BalI | TGGCCA | 1 cut(s) | 1359 |
| BanII | GRGCYC | 2 cut(s) | 1107, 1403 |
| BbvI | GCAGC | 5 cut(s) | 169, 1107, 1165, 1226, 1391 |
| BccI | CCATC | 4 cut(s) | 353, 406, 755, 1243 |
| BceAI | ACGGC | 1 cut(s) | 899 |
| BciT130I | CCWGG | 6 cut(s) | 33, 287, 383, 849, 920, 1361 |
| BcnI | CCSGG | 2 cut(s) | 597, 1331 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 5 cut(s) | 306, 615, 926, 954, 996 |
| BfmI | CTRYAG | 4 cut(s) | 63, 334, 1151, 1212 |
| BfoI | RGCGCY | 1 cut(s) | 1121 |
| BisI | GCNGC | 6 cut(s) | 158, 943, 1121, 1154, 1215, 1380 |
| BlsI | GCNGC | 6 cut(s) | 159, 944, 1122, 1155, 1216, 1381 |
| Bme1390I | CCNGG | 8 cut(s) | 33, 287, 383, 597, 849, 920, 1331, 1361 |
| Bme18I | GGWCC | 2 cut(s) | 283, 599 |
| BmeT110I | CYCGRG | 2 cut(s) | 168, 984 |
| BmiI | GGNNCC | 9 cut(s) | 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401 |
| BmrFI | CCNGG | 8 cut(s) | 33, 287, 383, 597, 849, 920, 1331, 1361 |
| BmsI | GCATC | 2 cut(s) | 226, 977 |
| Bpu10I | CCTNAGC | 1 cut(s) | 822 |
| BpuMI | CCSGG | 2 cut(s) | 597, 1331 |
| Bsa29I | ATCGAT | 2 cut(s) | 111, 144 |
| BsaBI | GATNNNNATC | 1 cut(s) | 625 |
| BsaHI | GRCGYC | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 5 cut(s) | 32, 402, 848, 919, 947 |
| BsaWI | WCCGGW | 2 cut(s) | 730, 1199 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 38, 388, 404, 432, 737, 1199, 1241 |
| Bse118I | RCCGGY | 1 cut(s) | 1005 |
| Bse1I | ACTGG | 1 cut(s) | 177 |
| Bse21I | CCTNAGG | 1 cut(s) | 1404 |
| Bse8I | GATNNNNATC | 1 cut(s) | 625 |
| BseAI | TCCGGA | 1 cut(s) | 730 |
| BseBI | CCWGG | 6 cut(s) | 33, 287, 383, 849, 920, 1361 |
| BseCI | ATCGAT | 2 cut(s) | 111, 144 |
| BseDI | CCNNGG | 5 cut(s) | 32, 402, 848, 919, 947 |
| BseGI | GGATG | 2 cut(s) | 398, 1235 |
| BseJI | GATNNNNATC | 1 cut(s) | 625 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 38, 388, 404, 432, 737, 1199, 1241 |
| BseMII | CTCAG | 4 cut(s) | 369, 462, 468, 1395 |
| BseNI | ACTGG | 1 cut(s) | 177 |
| BseRI | GAGGAG | 1 cut(s) | 1065 |
| BseSI | GKGCMC | 1 cut(s) | 1403 |
| BseX3I | CGGCCG | 1 cut(s) | 593 |
| BseXI | GCAGC | 5 cut(s) | 169, 1107, 1165, 1226, 1391 |
| BseYI | CCCAGC | 3 cut(s) | 1106, 1114, 1227 |
| Bsh1285I | CGRYCG | 1 cut(s) | 596 |
| BshVI | ATCGAT | 2 cut(s) | 111, 144 |
| BsiEI | CGRYCG | 1 cut(s) | 596 |
| BsiHKCI | CYCGRG | 2 cut(s) | 168, 984 |
| BsiSI | CCGG | 6 cut(s) | 596, 731, 1006, 1200, 1242, 1331 |
| BslFI | GGGAC | 2 cut(s) | 296, 448 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 38, 388, 404, 432, 737, 1199, 1241 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| BsmFI | GGGAC | 2 cut(s) | 296, 448 |
| BsoBI | CYCGRG | 2 cut(s) | 168, 984 |
| Bsp120I | GGGCCC | 1 cut(s) | 1399 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1107, 1403 |
| Bsp13I | TCCGGA | 1 cut(s) | 730 |
| BspACI | CCGC | 6 cut(s) | 340, 943, 1027, 1081, 1147, 1165 |
| BspCNI | CTCAG | 4 cut(s) | 368, 463, 469, 1396 |
| BspDI | ATCGAT | 2 cut(s) | 111, 144 |
| BspEI | TCCGGA | 1 cut(s) | 730 |
| BspHI | TCATGA | 2 cut(s) | 538, 745 |
| BspLI | GGNNCC | 9 cut(s) | 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401 |
| BspMAI | CTGCAG | 2 cut(s) | 1155, 1216 |
| BspPI | GGATC | 7 cut(s) | 615, 628, 634, 1086, 1122, 1133, 1216 |
| BsrFI | RCCGGY | 1 cut(s) | 1005 |
| BsrI | ACTGG | 1 cut(s) | 177 |
| BssAI | RCCGGY | 1 cut(s) | 1005 |
| BssECI | CCNNGG | 5 cut(s) | 32, 402, 848, 919, 947 |
| BssNI | GRCGYC | 1 cut(s) | 297 |
| BssT1I | CCWWGG | 1 cut(s) | 402 |
| Bst2UI | CCWGG | 6 cut(s) | 33, 287, 383, 849, 920, 1361 |
| Bst4CI | ACNGT | 4 cut(s) | 211, 259, 293, 643 |
| Bst6I | CTCTTC | 1 cut(s) | 267 |
| BstACI | GRCGYC | 1 cut(s) | 297 |
| BstC8I | GCNNGC | 6 cut(s) | 419, 672, 966, 1001, 1085, 1151 |
| BstDEI | CTNAG | 5 cut(s) | 355, 471, 477, 822, 1404 |
| BstEII | GGTNACC | 1 cut(s) | 1325 |
| BstF5I | GGATG | 2 cut(s) | 398, 1235 |
| BstH2I | RGCGCY | 1 cut(s) | 1121 |
| BstHHI | GCGC | 2 cut(s) | 1089, 1120 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMCI | CGRYCG | 1 cut(s) | 596 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 942, 1211 |
| BstNI | CCWGG | 6 cut(s) | 33, 287, 383, 849, 920, 1361 |
| BstNSI | RCATGY | 2 cut(s) | 578, 674 |
| BstPI | GGTNACC | 1 cut(s) | 1325 |
| BstSCI | CCNGG | 8 cut(s) | 31, 285, 381, 595, 847, 918, 1329, 1359 |
| BstSFI | CTRYAG | 4 cut(s) | 63, 334, 1151, 1212 |
| BstSLI | GKGCMC | 1 cut(s) | 1403 |
| BstV1I | GCAGC | 5 cut(s) | 169, 1107, 1165, 1226, 1391 |
| BstX2I | RGATCY | 4 cut(s) | 620, 626, 1091, 1127 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 761 |
| BstYI | RGATCY | 4 cut(s) | 620, 626, 1091, 1127 |
| BstZI | CGGCCG | 1 cut(s) | 593 |
| Bsu15I | ATCGAT | 2 cut(s) | 111, 144 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1404 |
| BsuTUI | ATCGAT | 2 cut(s) | 111, 144 |
| BtsCI | GGATG | 2 cut(s) | 398, 1235 |
| BtsIMutI | CAGTG | 2 cut(s) | 298, 537 |
| Cac8I | GCNNGC | 6 cut(s) | 419, 672, 966, 1001, 1085, 1151 |
| CciI | TCATGA | 2 cut(s) | 538, 745 |
| CfoI | GCGC | 2 cut(s) | 1089, 1120 |
| Cfr10I | RCCGGY | 1 cut(s) | 1005 |
| ClaI | ATCGAT | 2 cut(s) | 111, 144 |
| CseI | GACGC | 1 cut(s) | 305 |
| Csp6I | GTAC | 2 cut(s) | 180, 207 |
| CviAII | CATG | 8 cut(s) | 539, 575, 632, 671, 704, 736, 746, 837 |
| CviQI | GTAC | 2 cut(s) | 180, 207 |
| DdeI | CTNAG | 5 cut(s) | 355, 471, 477, 822, 1404 |
| EaeI | YGGCCR | 2 cut(s) | 593, 1357 |
| EagI | CGGCCG | 1 cut(s) | 593 |
| Eam1104I | CTCTTC | 1 cut(s) | 267 |
| EarI | CTCTTC | 1 cut(s) | 267 |
| EciI | GGCGGA | 2 cut(s) | 355, 1154 |
| EclXI | CGGCCG | 1 cut(s) | 593 |
| Eco130I | CCWWGG | 1 cut(s) | 402 |
| Eco24I | GRGCYC | 2 cut(s) | 1107, 1403 |
| Eco32I | GATATC | 1 cut(s) | 151 |
| Eco47I | GGWCC | 2 cut(s) | 283, 599 |
| Eco47III | AGCGCT | 1 cut(s) | 1119 |
| Eco52I | CGGCCG | 1 cut(s) | 593 |
| Eco81I | CCTNAGG | 1 cut(s) | 1404 |
| Eco88I | CYCGRG | 2 cut(s) | 168, 984 |
| Eco91I | GGTNACC | 1 cut(s) | 1325 |
| EcoO109I | RGGNCCY | 3 cut(s) | 283, 1399, 1400 |
| EcoO65I | GGTNACC | 1 cut(s) | 1325 |
| EcoRII | CCWGG | 6 cut(s) | 31, 285, 381, 847, 918, 1359 |
| EcoRV | GATATC | 1 cut(s) | 151 |
| EcoT14I | CCWWGG | 1 cut(s) | 402 |
| EcoT38I | GRGCYC | 2 cut(s) | 1107, 1403 |
| ErhI | CCWWGG | 1 cut(s) | 402 |
| FaeI | CATG | 8 cut(s) | 542, 578, 635, 674, 707, 739, 749, 840 |
| FaqI | GGGAC | 2 cut(s) | 296, 448 |
| FatI | CATG | 8 cut(s) | 538, 574, 631, 670, 703, 735, 745, 836 |
| FauI | CCCGC | 1 cut(s) | 1088 |
| Fnu4HI | GCNGC | 6 cut(s) | 158, 943, 1121, 1154, 1215, 1380 |
| FokI | GGATG | 2 cut(s) | 385, 1222 |
| FriOI | GRGCYC | 2 cut(s) | 1107, 1403 |
| Fsp4HI | GCNGC | 6 cut(s) | 158, 943, 1121, 1154, 1215, 1380 |
| FspBI | CTAG | 5 cut(s) | 306, 615, 926, 954, 996 |
| FspI | TGCGCA | 1 cut(s) | 1088 |
| GlaI | GCGC | 2 cut(s) | 1088, 1119 |
| GluI | GCNGC | 6 cut(s) | 158, 943, 1121, 1154, 1215, 1380 |
| GsaI | CCCAGC | 3 cut(s) | 1110, 1118, 1231 |
| HaeII | RGCGCY | 1 cut(s) | 1121 |
| HapII | CCGG | 6 cut(s) | 596, 731, 1006, 1200, 1242, 1331 |
| HgaI | GACGC | 1 cut(s) | 305 |
| HhaI | GCGC | 2 cut(s) | 1089, 1120 |
| Hin1I | GRCGYC | 1 cut(s) | 297 |
| Hin1II | CATG | 8 cut(s) | 542, 578, 635, 674, 707, 739, 749, 840 |
| Hin6I | GCGC | 2 cut(s) | 1087, 1118 |
| HinP1I | GCGC | 2 cut(s) | 1087, 1118 |
| HindIII | AAGCTT | 1 cut(s) | 555 |
| HinfI | GANTC | 6 cut(s) | 24, 473, 479, 485, 803, 992 |
| HpaII | CCGG | 6 cut(s) | 596, 731, 1006, 1200, 1242, 1331 |
| HphI | GGTGA | 4 cut(s) | 647, 1175, 1189, 1337 |
| Hpy188I | TCNGA | 9 cut(s) | 358, 472, 478, 484, 493, 508, 700, 813, 1049 |
| Hpy188III | TCNNGA | 9 cut(s) | 21, 116, 168, 539, 602, 624, 731, 746, 954 |
| Hpy99I | CGWCG | 2 cut(s) | 125, 936 |
| HpyAV | CCTTC | 3 cut(s) | 518, 1204, 1278 |
| HpyCH4III | ACNGT | 4 cut(s) | 211, 259, 293, 643 |
| HpyCH4IV | ACGT | 2 cut(s) | 931, 959 |
| HpyCH4V | TGCA | 9 cut(s) | 75, 239, 674, 842, 968, 1003, 1153, 1172, 1214 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 942, 1211 |
| HpyF3I | CTNAG | 5 cut(s) | 355, 471, 477, 822, 1404 |
| HpySE526I | ACGT | 2 cut(s) | 931, 959 |
| Hsp92I | GRCGYC | 1 cut(s) | 297 |
| Hsp92II | CATG | 8 cut(s) | 542, 578, 635, 674, 707, 739, 749, 840 |
| HspAI | GCGC | 2 cut(s) | 1087, 1118 |
| Kpn2I | TCCGGA | 1 cut(s) | 730 |
| LmnI | GCTCC | 3 cut(s) | 445, 685, 1202 |
| Lsp1109I | GCAGC | 5 cut(s) | 169, 1107, 1165, 1226, 1391 |
| LweI | GCATC | 2 cut(s) | 226, 977 |
| MaeI | CTAG | 5 cut(s) | 306, 615, 926, 954, 996 |
| MaeII | ACGT | 2 cut(s) | 931, 959 |
| MaeIII | GTNAC | 2 cut(s) | 293, 1325 |
| MflI | RGATCY | 4 cut(s) | 620, 626, 1091, 1127 |
| MhlI | GDGCHC | 2 cut(s) | 1107, 1403 |
| MlsI | TGGCCA | 1 cut(s) | 1359 |
| MluCI | AATT | 4 cut(s) | 200, 261, 586, 709 |
| MluNI | TGGCCA | 1 cut(s) | 1359 |
| MlyI | GAGTC | 5 cut(s) | 33, 482, 488, 812, 986 |
| Mox20I | TGGCCA | 1 cut(s) | 1359 |
| MroI | TCCGGA | 1 cut(s) | 730 |
| MroXI | GAANNNNTTC | 1 cut(s) | 46 |
| MscI | TGGCCA | 1 cut(s) | 1359 |
| MseI | TTAA | 2 cut(s) | 81, 518 |
| MslI | CAYNNNNRTG | 2 cut(s) | 759, 882 |
| Msp20I | TGGCCA | 1 cut(s) | 1359 |
| MspI | CCGG | 6 cut(s) | 596, 731, 1006, 1200, 1242, 1331 |
| MspR9I | CCNGG | 8 cut(s) | 33, 287, 383, 597, 849, 920, 1331, 1361 |
| MvaI | CCWGG | 6 cut(s) | 33, 287, 383, 849, 920, 1361 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 942, 1211 |
| NciI | CCSGG | 2 cut(s) | 597, 1331 |
| NlaIII | CATG | 8 cut(s) | 542, 578, 635, 674, 707, 739, 749, 840 |
| NlaIV | GGNNCC | 9 cut(s) | 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401 |
| NmuCI | GTSAC | 2 cut(s) | 293, 1325 |
| NsbI | TGCGCA | 1 cut(s) | 1088 |
| NspI | RCATGY | 2 cut(s) | 578, 674 |
| PaeI | GCATGC | 1 cut(s) | 674 |
| PaeR7I | CTCGAG | 2 cut(s) | 168, 984 |
| PagI | TCATGA | 2 cut(s) | 538, 745 |
| PciI | ACATGT | 1 cut(s) | 574 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 117, 150, 912 |
| PdmI | GAANNNNTTC | 1 cut(s) | 46 |
| PfeI | GAWTC | 1 cut(s) | 485 |
| PfoI | TCCNGGA | 1 cut(s) | 381 |
| PkrI | GCNGC | 6 cut(s) | 159, 944, 1122, 1155, 1216, 1381 |
| PleI | GAGTC | 5 cut(s) | 32, 481, 487, 811, 986 |
| PpsI | GAGTC | 5 cut(s) | 32, 481, 487, 811, 986 |
| PpuMI | RGGWCCY | 1 cut(s) | 283 |
| PscI | ACATGT | 1 cut(s) | 574 |
| Psp1406I | AACGTT | 1 cut(s) | 959 |
| Psp5II | RGGWCCY | 1 cut(s) | 283 |
| Psp6I | CCWGG | 6 cut(s) | 31, 285, 381, 847, 918, 1359 |
| PspEI | GGTNACC | 1 cut(s) | 1325 |
| PspFI | CCCAGC | 3 cut(s) | 1106, 1114, 1227 |
| PspGI | CCWGG | 6 cut(s) | 31, 285, 381, 847, 918, 1359 |
| PspN4I | GGNNCC | 9 cut(s) | 175, 284, 320, 600, 681, 1056, 1204, 1400, 1401 |
| PspOMI | GGGCCC | 1 cut(s) | 1399 |
| PspPPI | RGGWCCY | 1 cut(s) | 283 |
| PspXI | VCTCGAGB | 1 cut(s) | 984 |
| PstI | CTGCAG | 2 cut(s) | 1155, 1216 |
| PsuI | RGATCY | 4 cut(s) | 620, 626, 1091, 1127 |
| RsaI | GTAC | 2 cut(s) | 181, 208 |
| RsaNI | GTAC | 2 cut(s) | 180, 207 |
| RseI | CAYNNNNRTG | 2 cut(s) | 759, 882 |
| SaqAI | TTAA | 2 cut(s) | 81, 518 |
| SatI | GCNGC | 6 cut(s) | 158, 943, 1121, 1154, 1215, 1380 |
| SchI | GAGTC | 5 cut(s) | 33, 482, 488, 812, 986 |
| ScrFI | CCNGG | 8 cut(s) | 33, 287, 383, 597, 849, 920, 1331, 1361 |
| SduI | GDGCHC | 2 cut(s) | 1107, 1403 |
| SfaNI | GCATC | 2 cut(s) | 226, 977 |
| SfcI | CTRYAG | 4 cut(s) | 63, 334, 1151, 1212 |
| Sfr274I | CTCGAG | 2 cut(s) | 168, 984 |
| SinI | GGWCC | 2 cut(s) | 283, 599 |
| SlaI | CTCGAG | 2 cut(s) | 168, 984 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 759, 882 |
| SmlI | CTYRAG | 2 cut(s) | 168, 984 |
| SmoI | CTYRAG | 2 cut(s) | 168, 984 |
| SphI | GCATGC | 1 cut(s) | 674 |
| Sse9I | AATT | 4 cut(s) | 200, 261, 586, 709 |
| SsiI | CCGC | 6 cut(s) | 340, 943, 1027, 1081, 1147, 1165 |
| SspMI | CTAG | 5 cut(s) | 306, 615, 926, 954, 996 |
| StyD4I | CCNGG | 8 cut(s) | 31, 285, 381, 595, 847, 918, 1329, 1359 |
| StyI | CCWWGG | 1 cut(s) | 402 |
| TaaI | ACNGT | 4 cut(s) | 211, 259, 293, 643 |
| TaiI | ACGT | 2 cut(s) | 934, 962 |
| TaqI | TCGA | 5 cut(s) | 111, 144, 153, 169, 985 |
| TaqII | GACCGA | 1 cut(s) | 939 |
| TasI | AATT | 4 cut(s) | 200, 261, 586, 709 |
| TatI | WGTACW | 1 cut(s) | 179 |
| TauI | GCSGC | 1 cut(s) | 945 |
| TfiI | GAWTC | 1 cut(s) | 485 |
| Tru1I | TTAA | 2 cut(s) | 81, 518 |
| Tru9I | TTAA | 2 cut(s) | 81, 518 |
| TscAI | CASTG | 2 cut(s) | 298, 537 |
| TseFI | GTSAC | 2 cut(s) | 293, 1325 |
| TseI | GCWGC | 5 cut(s) | 157, 1120, 1153, 1214, 1379 |
| Tsp45I | GTSAC | 2 cut(s) | 293, 1325 |
| TspDTI | ATGAA | 6 cut(s) | 381, 527, 555, 572, 729, 800 |
| TspRI | CASTG | 2 cut(s) | 298, 537 |
| VpaK11BI | GGWCC | 2 cut(s) | 283, 599 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XbaI | TCTAGA | 1 cut(s) | 953 |
| XceI | RCATGY | 2 cut(s) | 578, 674 |
| XhoI | CTCGAG | 2 cut(s) | 168, 984 |
| XmnI | GAANNNNTTC | 1 cut(s) | 46 |
| XspI | CTAG | 5 cut(s) | 306, 615, 926, 954, 996 |