DnaJ molecular chaperone homology domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC_tran | PF00005 | 145 - 326 | 4.8e-17 | ABC transporter |
| ABC2_membrane | PF01061 | 480 - 691 | 5.7e-42 | ABC-2 type transporter |
| PDR_assoc | PF08370 | 696 - 754 | 2.4e-25 | Plant PDR ABC transporter associated |
| ABC_tran | PF00005 | 833 - 985 | 1.5e-20 | ABC transporter |
| ABC2_membrane | PF01061 | 1131 - 1344 | 2.9e-57 | ABC-2 type transporter |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 958 |
| Acc65I | GGTACC | 1 cut(s) | 3768 |
| AccB1I | GGYRCC | 3 cut(s) | 2077, 3175, 3768 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 351, 2954, 3380 |
| AccII | CGCG | 1 cut(s) | 2139 |
| AccIII | TCCGGA | 2 cut(s) | 376, 598 |
| AciI | CCGC | 8 cut(s) | 41, 1837, 2137, 2139, 2556, 2752, 2972, 3367 |
| AclWI | GGATC | 7 cut(s) | 77, 875, 1365, 1573, 1723, 3454, 3467 |
| AcoI | YGGCCR | 1 cut(s) | 3118 |
| AcuI | CTGAAG | 5 cut(s) | 203, 1058, 1211, 1884, 3529 |
| AfaI | GTAC | 7 cut(s) | 814, 2285, 2430, 2611, 3503, 3770, 3822 |
| AgeI | ACCGGT | 2 cut(s) | 2345, 2603 |
| AhlI | ACTAGT | 2 cut(s) | 391, 2360 |
| AjnI | CCWGG | 5 cut(s) | 2248, 2524, 3169, 3337, 3699 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3234, 3266, 4086, 4118 |
| AleI | CACNNNNGTG | 1 cut(s) | 2083 |
| Alw21I | GWGCWC | 2 cut(s) | 163, 3543 |
| AlwI | GGATC | 7 cut(s) | 77, 875, 1365, 1573, 1723, 3454, 3467 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3245, 3700 |
| Ama87I | CYCGRG | 1 cut(s) | 707 |
| Aor13HI | TCCGGA | 2 cut(s) | 376, 598 |
| AoxI | GGCC | 9 cut(s) | 481, 622, 786, 847, 2522, 3118, 3285, 3678, 4126 |
| ApeKI | GCWGC | 5 cut(s) | 38, 1736, 2975, 3884, 4082 |
| AseI | ATTAAT | 1 cut(s) | 2543 |
| AsiGI | ACCGGT | 2 cut(s) | 2345, 2603 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 594, 1487 |
| Asp718I | GGTACC | 1 cut(s) | 3768 |
| AspA2I | CCTAGG | 1 cut(s) | 3841 |
| AspLEI | GCGC | 2 cut(s) | 104, 520 |
| AspS9I | GGNCC | 7 cut(s) | 482, 947, 1148, 1919, 3678, 3697, 3947 |
| AsuC2I | CCSGG | 4 cut(s) | 459, 489, 758, 3945 |
| AsuHPI | GGTGA | 4 cut(s) | 2212, 2360, 3321, 4103 |
| AsuII | TTCGAA | 1 cut(s) | 1555 |
| AvaI | CYCGRG | 1 cut(s) | 707 |
| AvaII | GGWCC | 5 cut(s) | 947, 1148, 1919, 3697, 3947 |
| AvrII | CCTAGG | 1 cut(s) | 3841 |
| AxyI | CCTNAGG | 2 cut(s) | 1818, 2646 |
| BaeGI | GKGCMC | 2 cut(s) | 3180, 4006 |
| BalI | TGGCCA | 1 cut(s) | 3120 |
| BamHI | GGATCC | 1 cut(s) | 3459 |
| BanI | GGYRCC | 3 cut(s) | 2077, 3175, 3768 |
| BanII | GRGCYC | 4 cut(s) | 163, 1604, 2406, 3543 |
| BbsI | GAAGAC | 1 cut(s) | 1016 |
| Bbv12I | GWGCWC | 2 cut(s) | 163, 3543 |
| BbvCI | CCTCAGC | 1 cut(s) | 610 |
| BbvI | GCAGC | 5 cut(s) | 25, 1723, 2962, 3871, 4069 |
| BceAI | ACGGC | 4 cut(s) | 185, 346, 1285, 3146 |
| BciT130I | CCWGG | 5 cut(s) | 2250, 2526, 3171, 3339, 3701 |
| BciVI | GTATCC | 2 cut(s) | 2652, 3176 |
| BclI | TGATCA | 2 cut(s) | 91, 1303 |
| BcnI | CCSGG | 4 cut(s) | 459, 489, 758, 3945 |
| BcuI | ACTAGT | 2 cut(s) | 391, 2360 |
| BfaI | CTAG | 9 cut(s) | 132, 392, 668, 1242, 1349, 1517, 2361, 2900, 3842 |
| BfmI | CTRYAG | 4 cut(s) | 678, 927, 3237, 3805 |
| BfoI | RGCGCY | 1 cut(s) | 521 |
| BfuAI | ACCTGC | 1 cut(s) | 958 |
| BfuI | GTATCC | 2 cut(s) | 2652, 3176 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1338 |
| BisI | GCNGC | 8 cut(s) | 39, 1737, 2137, 2753, 2973, 2976, 3885, 4083 |
| BlnI | CCTAGG | 1 cut(s) | 3841 |
| BlpI | GCTNAGC | 1 cut(s) | 533 |
| BlsI | GCNGC | 8 cut(s) | 40, 1738, 2138, 2754, 2974, 2977, 3886, 4084 |
| Bme1390I | CCNGG | 9 cut(s) | 459, 489, 758, 2250, 2526, 3171, 3339, 3701, 3945 |
| Bme18I | GGWCC | 5 cut(s) | 947, 1148, 1919, 3697, 3947 |
| BmeT110I | CYCGRG | 1 cut(s) | 707 |
| BmgT120I | GGNCC | 7 cut(s) | 482, 947, 1148, 1919, 3678, 3697, 3947 |
| BmiI | GGNNCC | 8 cut(s) | 1752, 2079, 2756, 3177, 3461, 3711, 3770, 3948 |
| BmrFI | CCNGG | 9 cut(s) | 459, 489, 758, 2250, 2526, 3171, 3339, 3701, 3945 |
| BmsI | GCATC | 8 cut(s) | 113, 435, 763, 1387, 2317, 2953, 3837, 3905 |
| BpiI | GAAGAC | 1 cut(s) | 1016 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 593, 625, 1223, 1255 |
| BpmI | CTGGAG | 1 cut(s) | 2474 |
| Bpu10I | CCTNAGC | 1 cut(s) | 610 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 533 |
| Bpu14I | TTCGAA | 1 cut(s) | 1555 |
| BpuEI | CTTGAG | 5 cut(s) | 147, 530, 1651, 3179, 3711 |
| BpuMI | CCSGG | 4 cut(s) | 459, 489, 758, 3945 |
| Bsa29I | ATCGAT | 1 cut(s) | 1874 |
| BsaBI | GATNNNNATC | 3 cut(s) | 425, 1332, 1356 |
| BsaWI | WCCGGW | 4 cut(s) | 376, 598, 2345, 2603 |
| Bse118I | RCCGGY | 3 cut(s) | 1916, 2345, 2603 |
| Bse1I | ACTGG | 4 cut(s) | 2000, 3509, 3779, 3858 |
| Bse21I | CCTNAGG | 2 cut(s) | 1818, 2646 |
| Bse3DI | GCAATG | 1 cut(s) | 38 |
| Bse8I | GATNNNNATC | 3 cut(s) | 425, 1332, 1356 |
| BseAI | TCCGGA | 2 cut(s) | 376, 598 |
| BseBI | CCWGG | 5 cut(s) | 2250, 2526, 3171, 3339, 3701 |
| BseCI | ATCGAT | 1 cut(s) | 1874 |
| BseGI | GGATG | 8 cut(s) | 976, 1740, 2391, 2587, 2947, 3036, 3219, 3852 |
| BseJI | GATNNNNATC | 3 cut(s) | 425, 1332, 1356 |
| BseMI | GCAATG | 1 cut(s) | 38 |
| BseMII | CTCAG | 7 cut(s) | 537, 624, 1377, 1809, 2777, 2868, 3492 |
| BseNI | ACTGG | 4 cut(s) | 2000, 3509, 3779, 3858 |
| BseRI | GAGGAG | 1 cut(s) | 1193 |
| BseSI | GKGCMC | 2 cut(s) | 3180, 4006 |
| BseXI | GCAGC | 5 cut(s) | 25, 1723, 2962, 3871, 4069 |
| BseYI | CCCAGC | 1 cut(s) | 1732 |
| BsgI | GTGCAG | 2 cut(s) | 1065, 4061 |
| Bsh1236I | CGCG | 1 cut(s) | 2139 |
| BshFI | GGCC | 9 cut(s) | 483, 624, 788, 849, 2524, 3120, 3287, 3680, 4128 |
| BshNI | GGYRCC | 3 cut(s) | 2077, 3175, 3768 |
| BshTI | ACCGGT | 2 cut(s) | 2345, 2603 |
| BshVI | ATCGAT | 1 cut(s) | 1874 |
| BsiHKAI | GWGCWC | 2 cut(s) | 163, 3543 |
| BsiHKCI | CYCGRG | 1 cut(s) | 707 |
| BslFI | GGGAC | 6 cut(s) | 142, 740, 1280, 2242, 3423, 3960 |
| BsmBI | CGTCTC | 5 cut(s) | 1082, 2301, 2766, 3339, 4061 |
| BsmFI | GGGAC | 6 cut(s) | 142, 740, 1280, 2242, 3423, 3960 |
| BsmI | GAATGC | 2 cut(s) | 2516, 4020 |
| BsnI | GGCC | 9 cut(s) | 483, 624, 788, 849, 2524, 3120, 3287, 3680, 4128 |
| BsoBI | CYCGRG | 1 cut(s) | 707 |
| Bsp119I | TTCGAA | 1 cut(s) | 1555 |
| Bsp1286I | GDGCHC | 6 cut(s) | 163, 1604, 2406, 3180, 3543, 4006 |
| Bsp13I | TCCGGA | 2 cut(s) | 376, 598 |
| Bsp1407I | TGTACA | 1 cut(s) | 2428 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 533 |
| Bsp19I | CCATGG | 1 cut(s) | 3141 |
| BspACI | CCGC | 8 cut(s) | 41, 1837, 2137, 2139, 2556, 2752, 2972, 3367 |
| BspANI | GGCC | 9 cut(s) | 483, 624, 788, 849, 2524, 3120, 3287, 3680, 4128 |
| BspCNI | CTCAG | 7 cut(s) | 536, 623, 1376, 1810, 2776, 2869, 3491 |
| BspDI | ATCGAT | 1 cut(s) | 1874 |
| BspEI | TCCGGA | 2 cut(s) | 376, 598 |
| BspFNI | CGCG | 1 cut(s) | 2139 |
| BspHI | TCATGA | 2 cut(s) | 94, 3087 |
| BspLI | GGNNCC | 8 cut(s) | 1752, 2079, 2756, 3177, 3461, 3711, 3770, 3948 |
| BspMAI | CTGCAG | 2 cut(s) | 682, 3241 |
| BspMI | ACCTGC | 1 cut(s) | 958 |
| BspPI | GGATC | 7 cut(s) | 77, 875, 1365, 1573, 1723, 3454, 3467 |
| BspQI | GCTCTTC | 1 cut(s) | 3548 |
| BspT104I | TTCGAA | 1 cut(s) | 1555 |
| BspT107I | GGYRCC | 3 cut(s) | 2077, 3175, 3768 |
| BsrDI | GCAATG | 1 cut(s) | 38 |
| BsrFI | RCCGGY | 3 cut(s) | 1916, 2345, 2603 |
| BsrGI | TGTACA | 1 cut(s) | 2428 |
| BsrI | ACTGG | 4 cut(s) | 2000, 3509, 3779, 3858 |
| BssAI | RCCGGY | 3 cut(s) | 1916, 2345, 2603 |
| BssT1I | CCWWGG | 5 cut(s) | 2223, 2841, 3141, 3250, 3841 |
| Bst2UI | CCWGG | 5 cut(s) | 2250, 2526, 3171, 3339, 3701 |
| Bst6I | CTCTTC | 5 cut(s) | 727, 886, 3548, 3676, 4157 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3816 |
| BstAUI | TGTACA | 1 cut(s) | 2428 |
| BstBI | TTCGAA | 1 cut(s) | 1555 |
| BstC8I | GCNNGC | 8 cut(s) | 335, 682, 744, 1080, 1450, 2563, 3321, 3403 |
| BstDSI | CCRYGG | 3 cut(s) | 2137, 2718, 3141 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1229, 3704 |
| BstF5I | GGATG | 8 cut(s) | 976, 1740, 2391, 2587, 2947, 3036, 3219, 3852 |
| BstFNI | CGCG | 1 cut(s) | 2139 |
| BstH2I | RGCGCY | 1 cut(s) | 521 |
| BstHHI | GCGC | 2 cut(s) | 104, 520 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 1338, 1733, 1996, 2485, 2562, 2972, 3816, 3893, 4024 |
| BstNI | CCWGG | 5 cut(s) | 2250, 2526, 3171, 3339, 3701 |
| BstNSI | RCATGY | 3 cut(s) | 1452, 3405, 3814 |
| BstSCI | CCNGG | 9 cut(s) | 457, 487, 756, 2248, 2524, 3169, 3337, 3699, 3943 |
| BstSFI | CTRYAG | 4 cut(s) | 678, 927, 3237, 3805 |
| BstSLI | GKGCMC | 2 cut(s) | 3180, 4006 |
| BstUI | CGCG | 1 cut(s) | 2139 |
| BstV1I | GCAGC | 5 cut(s) | 25, 1723, 2962, 3871, 4069 |
| BstV2I | GAAGAC | 1 cut(s) | 1016 |
| BstX2I | RGATCY | 3 cut(s) | 880, 1357, 3459 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3966 |
| BstYI | RGATCY | 3 cut(s) | 880, 1357, 3459 |
| Bsu15I | ATCGAT | 1 cut(s) | 1874 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1818, 2646 |
| BsuI | GTATCC | 2 cut(s) | 2652, 3176 |
| BsuRI | GGCC | 9 cut(s) | 483, 624, 788, 849, 2524, 3120, 3287, 3680, 4128 |
| BsuTUI | ATCGAT | 1 cut(s) | 1874 |
| BtgI | CCRYGG | 3 cut(s) | 2137, 2718, 3141 |
| BtsCI | GGATG | 8 cut(s) | 976, 1740, 2391, 2587, 2947, 3036, 3219, 3852 |
| BtsI | GCAGTG | 1 cut(s) | 3000 |
| BveI | ACCTGC | 1 cut(s) | 958 |
| Cac8I | GCNNGC | 8 cut(s) | 335, 682, 744, 1080, 1450, 2563, 3321, 3403 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3245, 3700 |
| CciI | TCATGA | 2 cut(s) | 94, 3087 |
| CfoI | GCGC | 2 cut(s) | 104, 520 |
| Cfr10I | RCCGGY | 3 cut(s) | 1916, 2345, 2603 |
| Cfr13I | GGNCC | 7 cut(s) | 482, 947, 1148, 1919, 3678, 3697, 3947 |
| Cfr42I | CCGCGG | 1 cut(s) | 2140 |
| ClaI | ATCGAT | 1 cut(s) | 1874 |
| CseI | GACGC | 2 cut(s) | 1058, 3111 |
| Csp6I | GTAC | 7 cut(s) | 813, 2284, 2429, 2610, 3502, 3769, 3821 |
| CspAI | ACCGGT | 2 cut(s) | 2345, 2603 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1656, 1691, 3549, 3584 |
| CviQI | GTAC | 7 cut(s) | 813, 2284, 2429, 2610, 3502, 3769, 3821 |
| DraI | TTTAAA | 2 cut(s) | 1411, 1444 |
| EaeI | YGGCCR | 1 cut(s) | 3118 |
| Eam1104I | CTCTTC | 5 cut(s) | 727, 886, 3548, 3676, 4157 |
| EarI | CTCTTC | 5 cut(s) | 727, 886, 3548, 3676, 4157 |
| EciI | GGCGGA | 1 cut(s) | 1826 |
| Ecl136II | GAGCTC | 2 cut(s) | 161, 3541 |
| Eco130I | CCWWGG | 5 cut(s) | 2223, 2841, 3141, 3250, 3841 |
| Eco147I | AGGCCT | 1 cut(s) | 4128 |
| Eco24I | GRGCYC | 4 cut(s) | 163, 1604, 2406, 3543 |
| Eco32I | GATATC | 3 cut(s) | 1878, 2172, 2673 |
| Eco47I | GGWCC | 5 cut(s) | 947, 1148, 1919, 3697, 3947 |
| Eco53kI | GAGCTC | 2 cut(s) | 161, 3541 |
| Eco57I | CTGAAG | 5 cut(s) | 203, 1058, 1211, 1884, 3529 |
| Eco81I | CCTNAGG | 2 cut(s) | 1818, 2646 |
| Eco88I | CYCGRG | 1 cut(s) | 707 |
| EcoICRI | GAGCTC | 2 cut(s) | 161, 3541 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1229, 3704 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3697 |
| EcoRI | GAATTC | 2 cut(s) | 355, 1483 |
| EcoRII | CCWGG | 5 cut(s) | 2248, 2524, 3169, 3337, 3699 |
| EcoRV | GATATC | 3 cut(s) | 1878, 2172, 2673 |
| EcoT14I | CCWWGG | 5 cut(s) | 2223, 2841, 3141, 3250, 3841 |
| EcoT22I | ATGCAT | 1 cut(s) | 639 |
| EcoT38I | GRGCYC | 4 cut(s) | 163, 1604, 2406, 3543 |
| ErhI | CCWWGG | 5 cut(s) | 2223, 2841, 3141, 3250, 3841 |
| Esp3I | CGTCTC | 5 cut(s) | 1082, 2301, 2766, 3339, 4061 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1471, 1503, 2456, 2488, 3234, 3266, 3720, 3752 |
| FaqI | GGGAC | 6 cut(s) | 142, 740, 1280, 2242, 3423, 3960 |
| FauI | CCCGC | 1 cut(s) | 3374 |
| FauNDI | CATATG | 1 cut(s) | 2041 |
| FbaI | TGATCA | 2 cut(s) | 91, 1303 |
| Fnu4HI | GCNGC | 8 cut(s) | 39, 1737, 2137, 2753, 2973, 2976, 3885, 4083 |
| FokI | GGATG | 8 cut(s) | 983, 1727, 2398, 2594, 2954, 3023, 3226, 3859 |
| FriOI | GRGCYC | 4 cut(s) | 163, 1604, 2406, 3543 |
| Fsp4HI | GCNGC | 8 cut(s) | 39, 1737, 2137, 2753, 2973, 2976, 3885, 4083 |
| FspBI | CTAG | 9 cut(s) | 132, 392, 668, 1242, 1349, 1517, 2361, 2900, 3842 |
| GlaI | GCGC | 2 cut(s) | 103, 519 |
| GluI | GCNGC | 8 cut(s) | 39, 1737, 2137, 2753, 2973, 2976, 3885, 4083 |
| GsaI | CCCAGC | 1 cut(s) | 1736 |
| GsuI | CTGGAG | 1 cut(s) | 2474 |
| HaeII | RGCGCY | 1 cut(s) | 521 |
| HaeIII | GGCC | 9 cut(s) | 483, 624, 788, 849, 2524, 3120, 3287, 3680, 4128 |
| HgaI | GACGC | 2 cut(s) | 1058, 3111 |
| HhaI | GCGC | 2 cut(s) | 104, 520 |
| Hin6I | GCGC | 2 cut(s) | 102, 518 |
| HinP1I | GCGC | 2 cut(s) | 102, 518 |
| HincII | GTYRAC | 3 cut(s) | 924, 2443, 2895 |
| HindII | GTYRAC | 3 cut(s) | 924, 2443, 2895 |
| HpaI | GTTAAC | 1 cut(s) | 924 |
| HphI | GGTGA | 4 cut(s) | 2212, 2360, 3321, 4103 |
| Hpy188I | TCNGA | 5 cut(s) | 766, 1366, 2503, 2535, 2766 |
| HpyCH4IV | ACGT | 3 cut(s) | 409, 1091, 2884 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 1338, 1733, 1996, 2485, 2562, 2972, 3816, 3893, 4024 |
| HpySE526I | ACGT | 3 cut(s) | 409, 1091, 2884 |
| HspAI | GCGC | 2 cut(s) | 102, 518 |
| Kpn2I | TCCGGA | 2 cut(s) | 376, 598 |
| KpnI | GGTACC | 1 cut(s) | 3772 |
| Ksp22I | TGATCA | 2 cut(s) | 91, 1303 |
| KspAI | GTTAAC | 1 cut(s) | 924 |
| KspI | CCGCGG | 1 cut(s) | 2140 |
| LguI | GCTCTTC | 1 cut(s) | 3548 |
| LmnI | GCTCC | 6 cut(s) | 158, 2493, 2499, 2558, 2760, 3538 |
| Lsp1109I | GCAGC | 5 cut(s) | 25, 1723, 2962, 3871, 4069 |
| LweI | GCATC | 8 cut(s) | 113, 435, 763, 1387, 2317, 2953, 3837, 3905 |
| MaeI | CTAG | 9 cut(s) | 132, 392, 668, 1242, 1349, 1517, 2361, 2900, 3842 |
| MaeII | ACGT | 3 cut(s) | 409, 1091, 2884 |
| MaeIII | GTNAC | 5 cut(s) | 145, 566, 1808, 2413, 3223 |
| MfeI | CAATTG | 2 cut(s) | 2613, 3888 |
| MflI | RGATCY | 3 cut(s) | 880, 1357, 3459 |
| MhlI | GDGCHC | 6 cut(s) | 163, 1604, 2406, 3180, 3543, 4006 |
| MlsI | TGGCCA | 1 cut(s) | 3120 |
| MluNI | TGGCCA | 1 cut(s) | 3120 |
| MmeI | TCCRAC | 3 cut(s) | 856, 925, 1804 |
| Mox20I | TGGCCA | 1 cut(s) | 3120 |
| Mph1103I | ATGCAT | 1 cut(s) | 639 |
| MroI | TCCGGA | 2 cut(s) | 376, 598 |
| MroXI | GAANNNNTTC | 2 cut(s) | 594, 1487 |
| MscI | TGGCCA | 1 cut(s) | 3120 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1395, 2083, 2151, 2936 |
| Msp20I | TGGCCA | 1 cut(s) | 3120 |
| MspA1I | CMGCKG | 6 cut(s) | 223, 1736, 1934, 2139, 2556, 3482 |
| MspR9I | CCNGG | 9 cut(s) | 459, 489, 758, 2250, 2526, 3171, 3339, 3701, 3945 |
| MunI | CAATTG | 2 cut(s) | 2613, 3888 |
| Mva1269I | GAATGC | 2 cut(s) | 2516, 4020 |
| MvaI | CCWGG | 5 cut(s) | 2250, 2526, 3171, 3339, 3701 |
| MvnI | CGCG | 1 cut(s) | 2139 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 1338, 1733, 1996, 2485, 2562, 2972, 3816, 3893, 4024 |
| NciI | CCSGG | 4 cut(s) | 459, 489, 758, 3945 |
| NcoI | CCATGG | 1 cut(s) | 3141 |
| NdeI | CATATG | 1 cut(s) | 2041 |
| NlaIV | GGNNCC | 8 cut(s) | 1752, 2079, 2756, 3177, 3461, 3711, 3770, 3948 |
| NsiI | ATGCAT | 1 cut(s) | 639 |
| NspI | RCATGY | 3 cut(s) | 1452, 3405, 3814 |
| NspV | TTCGAA | 1 cut(s) | 1555 |
| OliI | CACNNNNGTG | 1 cut(s) | 2083 |
| PaeI | GCATGC | 2 cut(s) | 1452, 3405 |
| PagI | TCATGA | 2 cut(s) | 94, 3087 |
| PasI | CCCWGGG | 1 cut(s) | 3170 |
| PceI | AGGCCT | 1 cut(s) | 4128 |
| PciSI | GCTCTTC | 1 cut(s) | 3548 |
| PctI | GAATGC | 2 cut(s) | 2516, 4020 |
| PdmI | GAANNNNTTC | 2 cut(s) | 594, 1487 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 351, 2954, 3380 |
| PfoI | TCCNGGA | 3 cut(s) | 756, 2248, 3943 |
| PinAI | ACCGGT | 2 cut(s) | 2345, 2603 |
| PkrI | GCNGC | 8 cut(s) | 40, 1738, 2138, 2754, 2974, 2977, 3886, 4084 |
| PpuMI | RGGWCCY | 1 cut(s) | 3697 |
| PshBI | ATTAAT | 1 cut(s) | 2543 |
| Psp124BI | GAGCTC | 2 cut(s) | 163, 3543 |
| Psp5II | RGGWCCY | 1 cut(s) | 3697 |
| Psp6I | CCWGG | 5 cut(s) | 2248, 2524, 3169, 3337, 3699 |
| PspFI | CCCAGC | 1 cut(s) | 1732 |
| PspGI | CCWGG | 5 cut(s) | 2248, 2524, 3169, 3337, 3699 |
| PspN4I | GGNNCC | 8 cut(s) | 1752, 2079, 2756, 3177, 3461, 3711, 3770, 3948 |
| PspPI | GGNCC | 7 cut(s) | 482, 947, 1148, 1919, 3678, 3697, 3947 |
| PspPPI | RGGWCCY | 1 cut(s) | 3697 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2787, 2819 |
| PstI | CTGCAG | 2 cut(s) | 682, 3241 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3245, 3700 |
| PsuI | RGATCY | 3 cut(s) | 880, 1357, 3459 |
| PvuII | CAGCTG | 4 cut(s) | 223, 1736, 1934, 3482 |
| RsaI | GTAC | 7 cut(s) | 814, 2285, 2430, 2611, 3503, 3770, 3822 |
| RsaNI | GTAC | 7 cut(s) | 813, 2284, 2429, 2610, 3502, 3769, 3821 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1395, 2083, 2151, 2936 |
| SacI | GAGCTC | 2 cut(s) | 163, 3543 |
| SacII | CCGCGG | 1 cut(s) | 2140 |
| SapI | GCTCTTC | 1 cut(s) | 3548 |
| SatI | GCNGC | 8 cut(s) | 39, 1737, 2137, 2753, 2973, 2976, 3885, 4083 |
| Sau96I | GGNCC | 7 cut(s) | 482, 947, 1148, 1919, 3678, 3697, 3947 |
| ScrFI | CCNGG | 9 cut(s) | 459, 489, 758, 2250, 2526, 3171, 3339, 3701, 3945 |
| SduI | GDGCHC | 6 cut(s) | 163, 1604, 2406, 3180, 3543, 4006 |
| SfaNI | GCATC | 8 cut(s) | 113, 435, 763, 1387, 2317, 2953, 3837, 3905 |
| SfcI | CTRYAG | 4 cut(s) | 678, 927, 3237, 3805 |
| Sfr303I | CCGCGG | 1 cut(s) | 2140 |
| SfuI | TTCGAA | 1 cut(s) | 1555 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2345 |
| SgrBI | CCGCGG | 1 cut(s) | 2140 |
| SinI | GGWCC | 5 cut(s) | 947, 1148, 1919, 3697, 3947 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1395, 2083, 2151, 2936 |
| SmlI | CTYRAG | 5 cut(s) | 162, 545, 1666, 3158, 3726 |
| SmoI | CTYRAG | 5 cut(s) | 162, 545, 1666, 3158, 3726 |
| SpeI | ACTAGT | 2 cut(s) | 391, 2360 |
| SphI | GCATGC | 2 cut(s) | 1452, 3405 |
| SseBI | AGGCCT | 1 cut(s) | 4128 |
| SsiI | CCGC | 8 cut(s) | 41, 1837, 2137, 2139, 2556, 2752, 2972, 3367 |
| SspI | AATATT | 3 cut(s) | 20, 1950, 2212 |
| SspMI | CTAG | 9 cut(s) | 132, 392, 668, 1242, 1349, 1517, 2361, 2900, 3842 |
| SstI | GAGCTC | 2 cut(s) | 163, 3543 |
| StuI | AGGCCT | 1 cut(s) | 4128 |
| StyD4I | CCNGG | 9 cut(s) | 457, 487, 756, 2248, 2524, 3169, 3337, 3699, 3943 |
| StyI | CCWWGG | 5 cut(s) | 2223, 2841, 3141, 3250, 3841 |
| TaiI | ACGT | 3 cut(s) | 412, 1094, 2887 |
| TaqI | TCGA | 5 cut(s) | 1374, 1555, 1874, 2151, 3646 |
| TatI | WGTACW | 3 cut(s) | 812, 2428, 3501 |
| TauI | GCSGC | 3 cut(s) | 2139, 2755, 2975 |
| TseI | GCWGC | 5 cut(s) | 38, 1736, 2975, 3884, 4082 |
| TspGWI | ACGGA | 3 cut(s) | 3472, 3646, 4026 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 351, 2954, 3380 |
| VpaK11BI | GGWCC | 5 cut(s) | 947, 1148, 1919, 3697, 3947 |
| VspI | ATTAAT | 1 cut(s) | 2543 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1229, 3704 |
| XbaI | TCTAGA | 1 cut(s) | 1241 |
| XceI | RCATGY | 3 cut(s) | 1452, 3405, 3814 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 511, 3381 |
| XmaJI | CCTAGG | 1 cut(s) | 3841 |
| XmnI | GAANNNNTTC | 2 cut(s) | 594, 1487 |
| XspI | CTAG | 9 cut(s) | 132, 392, 668, 1242, 1349, 1517, 2361, 2900, 3842 |
| Zsp2I | ATGCAT | 1 cut(s) | 639 |