MD13G1058500.v1.1

Cytochrome p450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
4079449 .. 4079952
504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1058500.v1.1.491

Sequence Viewer

Length: 498 bp
ATGTCAGAAATATGTTCTCAATTAAGATTGGATATCCTGATCTGTTATCTATTTTTCGGGTTCATGCAGATGAGTATGATCCTCAACGAGTCTCTAAGGTTATATTCCCCTGTTGTTGGTTTTGTGAGGGAAGTTAAAAGGGAAGTTAAACTTGGAAAGCTTATTGTTCCTGCTAATTGTGAGTTGTTTGTCCCAAATCTAGCACTTCACCGTGATCCTCAGATCTGGGGAGAAGACGCGCTTCTTTTCAAACCGGAGAGATTCTCAGAAGAGGTTGCTAAAGCAACTAACAATAATGTAGGTGCTTTCATACCCTTTGGAATTGGACCTCGAAGTTGTGTCGGATTGAACTTTGCAAACACTGAAGCAAAGATTGTTTTGTCCATGATTCTACAACGATACTCCTTCACACTGTCCCCAGGTTACGTGCACTTGCCTGTTCAATATGTGACGATTCACCCAAAACTTGGAGTTCAGGTAATGCTACACCCACTTTGA

Protein Analysis

166

Amino Acids

18.65

Weight (kDa)

8.38

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 25 - 141 2.8e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 467
AccII CGCG 1 cut(s) 239
AclWI GGATC 2 cut(s) 73, 209
AcuI CTGAAG 1 cut(s) 384
AfiI CCNNNNNNNGG 2 cut(s) 116, 467
AgsI TTSAA 3 cut(s) 250, 349, 443
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 428
AlwI GGATC 2 cut(s) 73, 209
ApaLI GTGCAC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 200, 449
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 200
BglII AGATCT 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BsaAI YACGTR 1 cut(s) 427
BsaJI CCNNGG 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 467
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 418
BseLI CCNNNNNNNGG 2 cut(s) 116, 467
BseMII CTCAG 2 cut(s) 233, 279
BseSI GKGCMC 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 176, 400
BslI CCNNNNNNNGG 2 cut(s) 116, 467
BsmAI GTCTC 1 cut(s) 96
BsmFI GGGAC 2 cut(s) 176, 400
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 4 cut(s) 39, 78, 214, 222
BspCNI CTCAG 2 cut(s) 232, 278
BspFNI CGCG 1 cut(s) 239
BspPI GGATC 2 cut(s) 73, 209
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 4 cut(s) 39, 78, 214, 222
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 2 cut(s) 212, 414
Bst6I CTCTTC 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 95, 219, 265
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 4 cut(s) 42, 81, 217, 225
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 4 cut(s) 39, 78, 214, 222
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 360, 410
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 245
CviAII CATG 2 cut(s) 64, 385
CviJI RGCY 1 cut(s) 160
CviKI_1 RGCY 1 cut(s) 160
DdeI CTNAG 3 cut(s) 95, 219, 265
DpnI GATC 4 cut(s) 41, 80, 216, 224
DpnII GATC 4 cut(s) 39, 78, 214, 222
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 34
FaeI CATG 2 cut(s) 67, 388
FaiI YATR 7 cut(s) 13, 65, 77, 103, 311, 386, 447
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 225, 257
FaqI GGGAC 2 cut(s) 176, 400
FatI CATG 2 cut(s) 63, 384
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 240
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 67, 388
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 4 cut(s) 89, 261, 388, 454
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 200, 449
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 4 cut(s) 7, 222, 268, 344
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 2 cut(s) 212, 414
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 67, 356, 430
HpyF3I CTNAG 3 cut(s) 95, 219, 265
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 2 cut(s) 67, 388
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 4 cut(s) 39, 78, 214, 222
LpnPI CCDG 9 cut(s) 50, 123, 183, 211, 267, 405, 432, 450, 461
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 422, 448
MalI GATC 4 cut(s) 41, 80, 216, 224
MboI GATC 4 cut(s) 39, 78, 214, 222
MboII GAAGA 2 cut(s) 245, 281
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 3 cut(s) 20, 175, 321
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 5 cut(s) 92, 120, 228, 265, 339
MseI TTAA 3 cut(s) 23, 135, 147
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 239
NdeII GATC 4 cut(s) 39, 78, 214, 222
NlaIII CATG 2 cut(s) 67, 388
NmuCI GTSAC 1 cut(s) 448
PfeI GAWTC 3 cut(s) 261, 388, 454
PflMI CCANNNNNTGG 1 cut(s) 467
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 3 cut(s) 23, 135, 147
Sau3AI GATC 4 cut(s) 39, 78, 214, 222
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 432
SetI ASST 8 cut(s) 101, 162, 276, 304, 331, 424, 429, 480
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 3 cut(s) 20, 175, 321
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 212, 414
TaiI ACGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 331
TasI AATT 3 cut(s) 20, 175, 321
TfiI GAWTC 3 cut(s) 261, 388, 454
Tru1I TTAA 3 cut(s) 23, 135, 147
Tru9I TTAA 3 cut(s) 23, 135, 147
TscAI CASTG 2 cut(s) 367, 417
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 52, 298
TspRI CASTG 2 cut(s) 367, 417
Van91I CCANNNNNTGG 1 cut(s) 467
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 326
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.