Rh4DG359900

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
58097181 .. 58100308
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG359900.1

Sequence Viewer

Length: 522 bp
ATGAGCTCTTTAGCAATCATACTTCCAAGCTTTCTATGTCTGTTCATTCTGTTAGCTCTCATCAGGAATTTTCATAAACTATGGTGGACTCCAAATCGCTTACAGAGTCTAATGGCTACCCAGGGAATCACAGGTCCTTCTTACAGATTCATCCATGGGAACACCAAAGAAATCTCCAACATGAAAAAGGAAATTATAAGCAGGCCAATCAGTTTATCACATGACATATTATCTGCTGTTCAACCTCATATTCACTTATGGACCAAACTATACGGAAATATTTTTCTTCAATGGCATGGTTCTCGAGCTCAGTTAATTACTATGGAACCTGAGCTCTGCAAAGAGATACTCAATAACAAAGATAGAGTTTACATAAAAAAGAAGCCTCAAGGCTATGTCAAGAAGCTAGTGGGAAATGGCCTGGGGACTACCGAAGGTGAAAGATGGACCAAATTGCGAAAGGTGACCAACCATGCCTTCCATGGAGAGAGCTTAAAAAACACGTATCTAAACAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.99

Weight (kDa)

10.08

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 87 - 165 1.7e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
AcsI RAATTY 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 2 cut(s) 242, 290
AjnI CCWGG 2 cut(s) 120, 420
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 7 cut(s) 6, 30, 56, 308, 334, 406, 492
AluI AGCT 7 cut(s) 6, 30, 56, 308, 334, 406, 492
Alw21I GWGCWC 3 cut(s) 8, 310, 336
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 2 cut(s) 203, 418
ApoI RAATTY 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 134, 261, 447
AsuHPI GGTGA 2 cut(s) 449, 475
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 3 cut(s) 134, 261, 447
BanII GRGCYC 3 cut(s) 8, 310, 336
Bbv12I GWGCWC 3 cut(s) 8, 310, 336
BccI CCATC 1 cut(s) 438
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 2 cut(s) 122, 422
BfaI CTAG 1 cut(s) 407
Bme1390I CCNGG 2 cut(s) 122, 422
Bme18I GGWCC 3 cut(s) 134, 261, 447
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 3 cut(s) 134, 261, 447
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 122, 422
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 504
BsaJI CCNNGG 5 cut(s) 120, 121, 154, 421, 481
BseBI CCWGG 2 cut(s) 122, 422
BseDI CCNNGG 5 cut(s) 120, 121, 154, 421, 481
BseGI GGATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 321, 323
BshFI GGCC 2 cut(s) 205, 420
BsiHKAI GWGCWC 3 cut(s) 8, 310, 336
BsiHKCI CYCGRG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 2 cut(s) 205, 420
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 3 cut(s) 8, 310, 336
Bsp19I CCATGG 2 cut(s) 154, 481
BspANI GGCC 2 cut(s) 205, 420
BspCNI CTCAG 2 cut(s) 322, 322
BspLI GGNNCC 1 cut(s) 327
BssECI CCNNGG 5 cut(s) 120, 121, 154, 421, 481
BssT1I CCWWGG 2 cut(s) 154, 481
Bst2UI CCWGG 2 cut(s) 122, 422
BstBAI YACGTR 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 309, 330
BstDSI CCRYGG 2 cut(s) 154, 481
BstEII GGTNACC 1 cut(s) 463
BstF5I GGATG 1 cut(s) 150
BstNI CCWGG 2 cut(s) 122, 422
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 120, 420
BsuRI GGCC 2 cut(s) 205, 420
BtgI CCRYGG 2 cut(s) 154, 481
BtsCI GGATG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 134, 261, 447
CviAII CATG 6 cut(s) 155, 181, 221, 296, 473, 482
DdeI CTNAG 2 cut(s) 309, 330
Ecl136II GAGCTC 3 cut(s) 6, 308, 334
Eco130I CCWWGG 2 cut(s) 154, 481
Eco24I GRGCYC 3 cut(s) 8, 310, 336
Eco47I GGWCC 3 cut(s) 134, 261, 447
Eco53kI GAGCTC 3 cut(s) 6, 308, 334
Eco88I CYCGRG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 463
EcoICRI GAGCTC 3 cut(s) 6, 308, 334
EcoO109I RGGNCCY 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 120, 420
EcoT14I CCWWGG 2 cut(s) 154, 481
EcoT38I GRGCYC 3 cut(s) 8, 310, 336
ErhI CCWWGG 2 cut(s) 154, 481
FaeI CATG 6 cut(s) 158, 184, 224, 299, 476, 485
FaqI GGGAC 1 cut(s) 439
FatI CATG 6 cut(s) 154, 180, 220, 295, 472, 481
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 3 cut(s) 8, 310, 336
FspBI CTAG 1 cut(s) 407
HaeIII GGCC 2 cut(s) 205, 420
Hin1II CATG 6 cut(s) 158, 184, 224, 299, 476, 485
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 4 cut(s) 88, 106, 126, 147
HphI GGTGA 2 cut(s) 449, 475
Hpy166II GTNNAC 2 cut(s) 87, 370
Hpy188III TCNNGA 3 cut(s) 64, 303, 400
Hpy8I GTNNAC 2 cut(s) 87, 370
HpyAV CCTTC 3 cut(s) 147, 428, 487
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 1 cut(s) 339
HpyF3I CTNAG 2 cut(s) 309, 330
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 6 cut(s) 158, 184, 224, 299, 476, 485
LpnPI CCDG 8 cut(s) 49, 107, 117, 134, 187, 342, 407, 434
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 463
MboII GAAGA 1 cut(s) 278
MhlI GDGCHC 3 cut(s) 8, 310, 336
MluCI AATT 4 cut(s) 67, 192, 315, 452
MlyI GAGTC 2 cut(s) 82, 115
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 2 cut(s) 255, 396
MseI TTAA 2 cut(s) 314, 494
MspR9I CCNGG 2 cut(s) 122, 422
MvaI CCWGG 2 cut(s) 122, 422
NcoI CCATGG 2 cut(s) 154, 481
NlaIII CATG 6 cut(s) 158, 184, 224, 299, 476, 485
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 303
PasI CCCWGGG 1 cut(s) 121
PfeI GAWTC 2 cut(s) 126, 147
PleI GAGTC 2 cut(s) 82, 114
PpsI GAGTC 2 cut(s) 82, 114
Ppu21I YACGTR 1 cut(s) 504
PpuMI RGGWCCY 1 cut(s) 134
PsiI TTATAA 1 cut(s) 197
Psp124BI GAGCTC 3 cut(s) 8, 310, 336
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 120, 420
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 2 cut(s) 120, 420
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 3 cut(s) 134, 261, 447
PspPPI RGGWCCY 1 cut(s) 134
SacI GAGCTC 3 cut(s) 8, 310, 336
SaqAI TTAA 2 cut(s) 314, 494
Sau96I GGNCC 3 cut(s) 134, 261, 447
SchI GAGTC 2 cut(s) 82, 115
ScrFI CCNGG 2 cut(s) 122, 422
SduI GDGCHC 3 cut(s) 8, 310, 336
Sfr274I CTCGAG 1 cut(s) 303
SinI GGWCC 3 cut(s) 134, 261, 447
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 303, 387
SmoI CTYRAG 2 cut(s) 303, 387
Sse9I AATT 4 cut(s) 67, 192, 315, 452
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 407
SstI GAGCTC 3 cut(s) 8, 310, 336
StyD4I CCNGG 2 cut(s) 120, 420
StyI CCWWGG 2 cut(s) 154, 481
TaiI ACGT 1 cut(s) 506
TaqI TCGA 1 cut(s) 304
TasI AATT 4 cut(s) 67, 192, 315, 452
TfiI GAWTC 2 cut(s) 126, 147
Tru1I TTAA 2 cut(s) 314, 494
Tru9I TTAA 2 cut(s) 314, 494
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 4 cut(s) 34, 62, 139, 197
TspGWI ACGGA 1 cut(s) 288
VpaK11BI GGWCC 3 cut(s) 134, 261, 447
XapI RAATTY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 303
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.