Rh4DG360300

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
58129542 .. 58132355
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG360300.1

Sequence Viewer

Length: 726 bp
ATGCTTTCAAGCTTTCTGTGTCTGTTCCTTATTCTCATAGCTCTGATCTTGATCAAGATCTTTCTCACACAATGGTGGACTCCAACTCGCTTGCAGAAGTTGATGGCTCGGCAGGGAATCAAAGGCCCTTGTTACAGACTCGTCCATGGAAACACCAAAGAAATCTTGAACATGAAAAATGAAGCCATCAGCAGGCCCAAAAGTTTAACACATGACCTATTTCCTCTGGTTCAACCCCATTATCAGTCATGGGTCAAGAAATATGGGAAGGTTTTTCTTCAGTGGCATGGTACTGAACCTCAGTTGGTGATCTTTGAGCCTGAGTTGTGCAAAGAGATACTGAATAACAAGGACAGAGTTTATATGCAAAAGGATCGCCAAGGCTTTGAGAAGAACCTAGTAGGAAATGGCCTTGGGGCTGCTGAGGGGGAGCATTGGTCAAAATTGCGAAAAATAGCCAACCTTGCCTTTCATGGAGAGAGCTTAAAAAATATGATTCCAGATATGATAGCCAGTGCTGAGAAGATGCTGCAAAGGTGGAAAAATCACGAGGGGAAAGAGATTGAGGTGTATCAAGAATTTAGGTTGTTGACTTCAGATGTGATTTCCAGGACAGCATTCGGTAGCAGCTACTTAGAAGGCAAGAAAATTTTTGACATGTTGACCAAGTTATCCTCGTTGTTGGTCAGAAATTCTTACAAAGTCAGGCTTCCTGGCATCAGGTAA

Protein Analysis

241

Amino Acids

28.02

Weight (kDa)

9.73

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 82 - 228 4.4e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 381
AcsI RAATTY 3 cut(s) 578, 648, 691
AcuI CTGAAG 2 cut(s) 263, 579
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 192
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 3 cut(s) 9, 169, 233
AjnI CCWGG 2 cut(s) 608, 712
AleI CACNNNNGTG 1 cut(s) 73
AluBI AGCT 4 cut(s) 12, 41, 483, 630
AluI AGCT 4 cut(s) 12, 41, 483, 630
AlwI GGATC 1 cut(s) 381
AoxI GGCC 3 cut(s) 124, 194, 409
ApeKI GCWGC 3 cut(s) 419, 529, 627
ApoI RAATTY 3 cut(s) 578, 648, 691
AspS9I GGNCC 2 cut(s) 125, 195
AsuHPI GGTGA 1 cut(s) 319
BauI CACGAG 1 cut(s) 548
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 406, 516, 639
BccI CCATC 2 cut(s) 97, 194
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 2 cut(s) 610, 714
BclI TGATCA 1 cut(s) 51
BfaI CTAG 1 cut(s) 398
BglII AGATCT 1 cut(s) 57
BisI GCNGC 3 cut(s) 420, 530, 628
BlsI GCNGC 3 cut(s) 421, 531, 629
Bme1390I CCNGG 2 cut(s) 610, 714
BmgT120I GGNCC 2 cut(s) 125, 195
BmrFI CCNGG 2 cut(s) 610, 714
BmsI GCATC 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 423
BsaBI GATNNNNATC 2 cut(s) 50, 56
BsaJI CCNNGG 3 cut(s) 145, 379, 412
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 513
Bse8I GATNNNNATC 2 cut(s) 50, 56
BseBI CCWGG 2 cut(s) 610, 714
BseDI CCNNGG 3 cut(s) 145, 379, 412
BseJI GATNNNNATC 2 cut(s) 50, 56
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 4 cut(s) 312, 314, 414, 510
BseNI ACTGG 1 cut(s) 513
BseXI GCAGC 3 cut(s) 406, 516, 639
BshFI GGCC 3 cut(s) 126, 196, 411
BslI CCNNNNNNNGG 1 cut(s) 192
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 3 cut(s) 126, 196, 411
Bsp143I GATC 5 cut(s) 45, 51, 57, 309, 373
Bsp19I CCATGG 1 cut(s) 145
BspANI GGCC 3 cut(s) 126, 196, 411
BspCNI CTCAG 4 cut(s) 313, 313, 415, 511
BspPI GGATC 1 cut(s) 381
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 3 cut(s) 145, 379, 412
BssMI GATC 5 cut(s) 45, 51, 57, 309, 373
BssSI CACGAG 1 cut(s) 548
BssT1I CCWWGG 3 cut(s) 145, 379, 412
Bst2BI CACGAG 1 cut(s) 548
Bst2UI CCWGG 2 cut(s) 610, 714
BstC8I GCNNGC 2 cut(s) 92, 194
BstDEI CTNAG 5 cut(s) 300, 321, 423, 519, 634
BstDSI CCRYGG 1 cut(s) 145
BstKTI GATC 5 cut(s) 48, 54, 60, 312, 376
BstMBI GATC 5 cut(s) 45, 51, 57, 309, 373
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 2 cut(s) 610, 714
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 2 cut(s) 608, 712
BstV1I GCAGC 3 cut(s) 406, 516, 639
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 3 cut(s) 126, 196, 411
BtgI CCRYGG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 287, 520
Cac8I GCNNGC 2 cut(s) 92, 194
Cfr13I GGNCC 2 cut(s) 125, 195
Csp6I GTAC 1 cut(s) 291
CviAII CATG 7 cut(s) 146, 172, 212, 249, 287, 473, 658
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 5 cut(s) 300, 321, 423, 519, 634
DpnI GATC 5 cut(s) 47, 53, 59, 311, 375
DpnII GATC 5 cut(s) 45, 51, 57, 309, 373
Eco130I CCWWGG 3 cut(s) 145, 379, 412
Eco57I CTGAAG 2 cut(s) 263, 579
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 608, 712
EcoT14I CCWWGG 3 cut(s) 145, 379, 412
ErhI CCWWGG 3 cut(s) 145, 379, 412
FaeI CATG 7 cut(s) 149, 175, 215, 252, 290, 476, 661
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FatI CATG 7 cut(s) 145, 171, 211, 248, 286, 472, 657
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 420, 530, 628
Fsp4HI GCNGC 3 cut(s) 420, 530, 628
FspBI CTAG 1 cut(s) 398
GluI GCNGC 3 cut(s) 420, 530, 628
HaeIII GGCC 3 cut(s) 126, 196, 411
Hin1II CATG 7 cut(s) 149, 175, 215, 252, 290, 476, 661
HincII GTYRAC 2 cut(s) 591, 663
HindII GTYRAC 2 cut(s) 591, 663
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 4 cut(s) 79, 117, 138, 496
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 3 cut(s) 78, 591, 663
Hpy188I TCNGA 3 cut(s) 45, 598, 689
Hpy188III TCNNGA 7 cut(s) 49, 55, 166, 256, 500, 548, 575
Hpy8I GTNNAC 3 cut(s) 78, 591, 663
HpyAV CCTTC 2 cut(s) 262, 632
HpyCH4V TGCA 4 cut(s) 94, 330, 367, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 5 cut(s) 300, 321, 423, 519, 634
Hsp92II CATG 7 cut(s) 149, 175, 215, 252, 290, 476, 661
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 45, 51, 57, 309, 373
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 3 cut(s) 406, 516, 639
LweI GCATC 1 cut(s) 516
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 131
MalI GATC 5 cut(s) 47, 53, 59, 311, 375
MboI GATC 5 cut(s) 45, 51, 57, 309, 373
MboII GAAGA 3 cut(s) 269, 403, 535
MflI RGATCY 1 cut(s) 57
MluCI AATT 4 cut(s) 443, 578, 648, 691
MlyI GAGTC 2 cut(s) 73, 132
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 6 cut(s) 234, 309, 418, 544, 559, 685
MseI TTAA 2 cut(s) 206, 485
MslI CAYNNNNRTG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 610, 714
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 2 cut(s) 610, 714
MwoI GCNNNNNNNGC 1 cut(s) 464
NcoI CCATGG 1 cut(s) 145
NdeII GATC 5 cut(s) 45, 51, 57, 309, 373
NlaIII CATG 7 cut(s) 149, 175, 215, 252, 290, 476, 661
NmeAIII GCCGAG 1 cut(s) 88
NspI RCATGY 1 cut(s) 661
OliI CACNNNNGTG 1 cut(s) 73
PciI ACATGT 1 cut(s) 657
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 2 cut(s) 117, 496
PfoI TCCNGGA 1 cut(s) 608
PkrI GCNGC 3 cut(s) 421, 531, 629
PleI GAGTC 2 cut(s) 73, 132
PpsI GAGTC 2 cut(s) 73, 132
PscI ACATGT 1 cut(s) 657
Psp6I CCWGG 2 cut(s) 608, 712
PspGI CCWGG 2 cut(s) 608, 712
PspPI GGNCC 2 cut(s) 125, 195
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 2 cut(s) 206, 485
SatI GCNGC 3 cut(s) 420, 530, 628
Sau3AI GATC 5 cut(s) 45, 51, 57, 309, 373
Sau96I GGNCC 2 cut(s) 125, 195
SchI GAGTC 2 cut(s) 73, 132
ScrFI CCNGG 2 cut(s) 610, 714
SfaNI GCATC 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 73
Sse9I AATT 4 cut(s) 443, 578, 648, 691
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 608, 712
StyI CCWWGG 3 cut(s) 145, 379, 412
TasI AATT 4 cut(s) 443, 578, 648, 691
TfiI GAWTC 2 cut(s) 117, 496
Tru1I TTAA 2 cut(s) 206, 485
Tru9I TTAA 2 cut(s) 206, 485
TscAI CASTG 2 cut(s) 287, 520
TseI GCWGC 3 cut(s) 419, 529, 627
TspDTI ATGAA 3 cut(s) 188, 195, 461
TspRI CASTG 2 cut(s) 287, 520
XapI RAATTY 3 cut(s) 578, 648, 691
XceI RCATGY 1 cut(s) 661
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.